Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_2040 Physcomitrium patens HOM05D001772 ORTHO05D008903 2.7e-263 911.4 440 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1652 Anthoceros agrestis HOM05D001772 ORTHO05D008903 2.9e-108 396.4 412 48.5
MD07G1147600 Malus domestica HOM05D001772 ORTHO05D008903 2.8e-106 389.8 364 50.5
MD01G1078600 Malus domestica HOM05D001772 ORTHO05D008903 5.2e-105 385.6 363 49.9
VMungo0540G0918 Vigna mungo HOM05D001772 ORTHO05D008903 6.8e-105 385.2 369 49.9
PSO135G0498 Papaver somniferum HOM05D001772 ORTHO05D008903 8.9e-105 384.8 368 51.4
Migut.N01555 Erythranthe guttata HOM05D001772 ORTHO05D008903 1.5e-104 384.0 365 49.0
TPR.G8988 Trifolium pratense HOM05D001772 ORTHO05D008903 2.0e-104 383.6 368 50.3
Zm00001eb358410 Zea mays HOM05D001772 ORTHO05D008903 2.0e-104 383.6 427 47.8
CSS0012714 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 2.6e-104 383.3 364 48.6
arahy.Tifrunner.gnm1.ann1.NY4TXX Arachis hypogaea HOM05D001772 ORTHO05D008903 4.4e-104 382.5 367 49.6
Aqoxy7G00133 Aquilegia oxysepala HOM05D001772 ORTHO05D008903 1.3e-103 380.9 367 48.8
Psat2g145680 Pisum sativum HOM05D001772 ORTHO05D008903 1.3e-103 380.9 365 50.7
Prupe.2G185600 Prunus persica HOM05D001772 ORTHO05D008903 1.3e-103 380.9 367 49.3
Lalb_Chr04g0261581 Lupinus albus HOM05D001772 ORTHO05D008903 1.7e-103 380.6 356 50.8
Aa31LG5G920 Aethionema arabicum HOM05D001772 ORTHO05D008903 3.7e-103 379.4 368 51.1
Ca_25036_v3 Cicer arietinum L. HOM05D001772 ORTHO05D008903 3.7e-103 379.4 368 50.0
arahy.Tifrunner.gnm1.ann1.HV5NER Arachis hypogaea HOM05D001772 ORTHO05D008903 6.4e-103 378.6 367 49.9
Potri.014G096700 Populus trichocarpa HOM05D001772 ORTHO05D008903 6.4e-103 378.6 362 49.7
RcHm_v2.0_Chr1g0359211 Rosa chinensis HOM05D001772 ORTHO05D008903 6.4e-103 378.6 366 49.5
CARHR249250 Cardamine hirsuta HOM05D001772 ORTHO05D008903 8.3e-103 378.3 370 50.5
AT4G01040 Arabidopsis thaliana HOM05D001772 ORTHO05D008903 1.4e-102 377.5 369 50.9
Eucgr.E00067 Eucalyptus grandis HOM05D001772 ORTHO05D008903 1.4e-102 377.5 442 43.7
Thhalv10028671m.g Eutrema salsugineum HOM05D001772 ORTHO05D008903 1.4e-102 377.5 367 51.2
Carub.0006s3610 Capsella rubella HOM05D001772 ORTHO05D008903 2.4e-102 376.7 369 50.7
QL04p013773 Quercus lobata HOM05D001772 ORTHO05D008903 5.4e-102 375.6 409 45.5
Manes.05G024600 Manihot esculenta HOM05D001772 ORTHO05D008903 9.2e-102 374.8 367 48.8
GSVIVG01027076001 Vitis vinifera HOM05D001772 ORTHO05D008903 1.2e-101 374.4 443 43.8
FvH4_7g16200 Fragaria vesca HOM05D001772 ORTHO05D008903 1.6e-101 374.0 405 45.7
TWI59G0809 Tripterygium wilfordii HOM05D001772 ORTHO05D008903 1.6e-101 374.0 365 49.0
PSO384G4631 Papaver somniferum HOM05D001772 ORTHO05D008903 2.0e-101 373.6 368 49.2
Medtr5g025480 Medicago truncatula HOM05D001772 ORTHO05D008903 3.5e-101 372.9 369 49.6
Sp6g01100 Schrenkiella parvula HOM05D001772 ORTHO05D008903 6.0e-101 372.1 367 49.3
Lsat_1_v5_gn_3_139600 Lactuca sativa HOM05D001772 ORTHO05D008903 1.0e-100 371.3 413 45.0
Duzib138G1524 Durio zibethinus HOM05D001772 ORTHO05D008903 1.7e-100 370.5 379 47.5
Dinv18731 Davidia involucrata HOM05D001772 ORTHO05D008903 3.9e-100 369.4 364 47.3
vmacro13174 Vaccinium macrocarpon HOM05D001772 ORTHO05D008903 3.9e-100 369.4 444 43.0
THA.LOC104825876 Tarenaya hassleriana HOM05D001772 ORTHO05D008903 5.0e-100 369.0 366 50.3
Gohir.D12G114800 Gossypium hirsutum HOM05D001772 ORTHO05D008903 6.6e-100 368.6 366 47.8
Atru.chr5.644 Acer truncatum HOM05D001772 ORTHO05D008903 1.5e-99 367.5 366 48.6
Ciclev10020231m.g Citrus clementina HOM05D001772 ORTHO05D008903 1.5e-99 367.5 365 48.2
CAN.G239.5 Capsicum annuum HOM05D001772 ORTHO05D008903 2.5e-99 366.7 402 45.3
TAR375G0197 Trochodendron aralioides HOM05D001772 ORTHO05D008903 3.3e-99 366.3 366 46.4
Gorai.008G124300 Gossypium raimondii HOM05D001772 ORTHO05D008903 5.6e-99 365.5 366 47.5
Gohir.A12G111500 Gossypium hirsutum HOM05D001772 ORTHO05D008903 9.5e-99 364.8 366 47.3
Oeu007903.1 Olea europaea HOM05D001772 ORTHO05D008903 9.5e-99 364.8 363 46.0
Sabra14G0070800 Salix brachista HOM05D001772 ORTHO05D008903 9.5e-99 364.8 352 49.1
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.1e-98 363.6 344 49.4
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.8e-98 363.2 354 48.6
PGR042G2345 Punica granatum HOM05D001772 ORTHO05D008903 2.8e-98 363.2 360 48.6
PGSC0003DMG402033880 Solanum tuberosum HOM05D001772 ORTHO05D008903 3.6e-98 362.8 364 48.1
SGA_v2.0_scaffold11G05728 Striga asiatica HOM05D001772 ORTHO05D008903 3.6e-98 362.8 365 46.6
Lj1g0009750 Lotus japonicus HOM05D001772 ORTHO05D008903 4.7e-98 362.5 358 48.6
SEGI_01392 Sequoiadendron giganteum HOM05D001772 ORTHO05D008903 4.7e-98 362.5 330 52.7
ClCG05G000920 Citrullus lanatus HOM05D001772 ORTHO05D008903 6.2e-98 362.1 365 48.2
CDE10G0091 Ceratophyllum demersum HOM05D001772 ORTHO05D008903 8.0e-98 361.7 367 48.0
Sc01g0002840 Simmondsia chinensis HOM05D001772 ORTHO05D008903 1.1e-97 361.3 396 45.2
SalBow5G1378 Salvia bowleyana HOM05D001772 ORTHO05D008903 3.1e-97 359.8 393 45.8
EL10Ac1g00295 Beta vulgaris HOM05D001772 ORTHO05D008903 4.0e-97 359.4 363 47.1
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 4.0e-97 359.4 360 47.5
Sopen05g028720 Solanum pennellii HOM05D001772 ORTHO05D008903 8.9e-97 358.2 368 46.7
Thecc.01G344900 Theobroma cacao HOM05D001772 ORTHO05D008903 8.9e-97 358.2 373 45.8
COL.COLO4_06307 Corchorus olitorius HOM05D001772 ORTHO05D008903 1.2e-96 357.8 366 48.4
Sed0004684 Sechium edule HOM05D001772 ORTHO05D008903 1.2e-96 357.8 362 48.1
CsaV3_3G008150 Cucumis sativus L. HOM05D001772 ORTHO05D008903 2.0e-96 357.1 365 48.5
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.0e-96 357.1 404 45.0
Rhsim07G0005700 Rhododendron simsii HOM05D001772 ORTHO05D008903 2.6e-96 356.7 364 46.2
HanXRQChr11g0353031 Helianthus annuus HOM05D001772 ORTHO05D008903 4.4e-96 355.9 358 48.0
Nn3g19051 Nelumbo nucifera HOM05D001772 ORTHO05D008903 1.3e-95 354.4 362 47.0
SMO167G0031 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 1.3e-95 354.4 331 52.9
SMO347G0199 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 1.3e-95 354.4 332 53.0
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.2e-95 353.6 399 45.1
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 2.9e-95 353.2 433 40.2
AUR62004469 Chenopodium quinoa HOM05D001772 ORTHO05D008903 2.9e-95 353.2 364 46.4
AUR62023481 Chenopodium quinoa HOM05D001772 ORTHO05D008903 2.9e-95 353.2 364 46.7
Glyma.03G256800 Glycine max HOM05D001772 ORTHO05D008903 3.7e-95 352.8 353 48.4
Cc02_g39160 Coffea canephora HOM05D001772 ORTHO05D008903 4.9e-95 352.4 425 42.6
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 6.4e-95 352.1 359 49.0
Ah.05g179760 Amaranthus hybridus HOM05D001772 ORTHO05D008903 8.3e-95 351.7 440 42.3
BcaC01g06839 Brassica carinata HOM05D001772 ORTHO05D008903 1.4e-94 350.9 433 43.6
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 2.4e-94 350.1 432 43.8
Phvul.006G111900 Phaseolus vulgaris HOM05D001772 ORTHO05D008903 2.4e-94 350.1 323 52.3
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 4.1e-94 349.4 432 43.8
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 4.1e-94 349.4 432 43.8
Mapoly0102s0038 Marchantia polymorpha HOM05D001772 ORTHO05D008903 4.1e-94 349.4 339 52.2
Peaxi162Scf00403g00519 Petunia axillaris HOM05D001772 ORTHO05D008903 7.1e-94 348.6 353 45.9
Solyc05g050320.4 Solanum lycopersicum HOM05D001772 ORTHO05D008903 2.1e-93 347.1 354 46.6
Hund27212 Selenicereus undatus HOM05D001772 ORTHO05D008903 2.7e-93 346.7 401 43.1
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 4.6e-93 345.9 395 44.3
MBI06_g46729_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D008903 3.9e-92 342.8 399 43.1
BcaB01g02345 Brassica carinata HOM05D001772 ORTHO05D008903 5.1e-92 342.4 432 43.3
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 3.3e-91 339.7 440 39.5
CSS0002891 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 2.6e-88 330.1 328 46.0
Haze_15635 Corylus avellana HOM05D001772 ORTHO05D008903 4.4e-88 329.3 363 44.6
ECA240G4072 Erigeron canadensis HOM05D001772 ORTHO05D008903 4.4e-88 329.3 350 45.7
Lj9A595T55 Lonicera japonica HOM05D001772 ORTHO05D008903 6.4e-87 325.5 322 47.8
HPP92_005515 Vanilla planifolia HOM05D001772 ORTHO05D008903 1.4e-86 324.3 358 42.7
Nitab4.5_0000258g0130 Nicotiana tabacum HOM05D001772 ORTHO05D008903 7.8e-85 318.5 353 45.3
DCAR_005380 Daucus carota HOM05D001772 ORTHO05D008903 1.0e-84 318.2 456 37.9
MELO3C006034.2 Cucumis melo HOM05D001772 ORTHO05D008903 3.4e-80 303.1 366 43.4
CBR_g3968 Chara braunii HOM05D001772 ORTHO05D008903 8.7e-76 288.5 401 37.9
Cpa.g.sc273.9 Carica papaya HOM05D001772 ORTHO05D008903 4.4e-72 276.2 284 45.4
AL6G52340 Arabidopsis lyrata HOM05D001772 ORTHO05D008903 1.7e-68 264.2 255 52.9
Cre03.g200650 Chlamydomonas reinhardtii HOM05D001772 ORTHO05D008903 3.3e-67 260.0 387 37.0
Actinidia10113 Actinidia chinensis HOM05D001772 ORTHO05D008903 1.5e-51 208.0 204 46.1
Nitab4.5_0004506g0060 Nicotiana tabacum HOM05D001772 ORTHO05D008903 1.7e-47 194.5 351 32.8
CiPaw.01G074400 Carya illinoinensis HOM05D001772 ORTHO05D008903 1.4e-41 174.9 159 46.5
ATR0589G019 Amborella trichopoda HOM05D001772 ORTHO05D008903 1.8e-36 157.9 183 42.1
Os01g0619800 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D008903 4.1e-33 146.7 133 51.9
Nitab4.5_0015177g0010 Nicotiana tabacum HOM05D001772 ORTHO05D000634 4.4e-19 100.1 121 42.1
Zm00001eb297790 Zea mays HOM05D001772 ORTHO05D023027 7.5e-19 99.4 138 41.3
Pp3s155_60 Physcomitrium patens HOM05D035085 ORTHO05D312423 5.7e-11 73.2 184 24.5
Glyma.19G255000 Glycine max HOM05D001772 ORTHO05D008903 8.3e-10 69.3 99 41.4
SEGI_30730 Sequoiadendron giganteum HOM05D001772 ORTHO05D002270 5.0e-07 60.1 52 50.0
Nitab4.5_0015177g0020 Nicotiana tabacum HOM05D001772 ORTHO05D008903 1.5e-06 58.5 50 46.0


User provided reference genes

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