Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 0.0e+00 2626.3 1366 100.0
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 3.8e-247 859.4 1414 39.6
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 9.6e-190 668.7 1447 33.9
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 4.7e-189 666.4 1472 33.5
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 2.4e-188 664.1 1435 33.5
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 3.4e-187 660.2 1437 32.5
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 1.7e-186 657.9 1392 34.2
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 4.9e-186 656.4 1405 34.3
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 8.4e-186 655.6 1435 33.3
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 1.4e-185 654.8 1405 33.7
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 2.4e-185 654.1 1439 33.6
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 7.1e-185 652.5 1420 32.6
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 1.6e-184 651.4 1434 33.5
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 2.1e-184 651.0 1433 33.4
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 2.7e-184 650.6 1414 34.0
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 2.7e-184 650.6 1442 32.7
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 6.0e-184 649.4 1411 33.4
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 2.3e-183 647.5 1416 33.8
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 8.7e-183 645.6 1434 32.2
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 1.1e-182 645.2 1448 32.7
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.1e-182 645.2 1433 32.4
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 9.6e-182 642.1 1395 33.4
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.3e-181 641.7 1426 33.8
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 1.6e-181 641.3 1410 33.5
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 2.1e-181 641.0 1453 33.5
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 2.8e-181 640.6 1379 34.1
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 2.8e-181 640.6 1393 33.6
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 3.6e-181 640.2 1442 32.5
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 4.8e-181 639.8 1414 33.2
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 4.8e-181 639.8 1354 34.0
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 6.2e-181 639.4 1381 34.0
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.1e-180 638.6 1427 32.1
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 1.4e-180 638.3 1389 33.4
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 3.1e-180 637.1 1392 33.2
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 9.0e-180 635.6 1357 33.8
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 1.5e-179 634.8 1447 33.7
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 3.4e-179 633.6 1426 32.2
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 7.6e-179 632.5 1378 33.4
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 7.6e-179 632.5 1374 33.8
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 7.6e-179 632.5 1369 33.2
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 2.9e-178 630.6 1461 32.7
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 1.9e-177 627.9 1379 33.4
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 1.9e-177 627.9 1423 32.9
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 2.4e-177 627.5 1437 32.7
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 2.4e-177 627.5 1426 32.7
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 3.2e-177 627.1 1423 33.4
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 5.4e-177 626.3 1374 33.2
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 2.7e-176 624.0 1442 32.9
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 3.5e-176 623.6 1024 40.5
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 1.8e-172 611.3 1380 32.0
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 4.0e-172 610.1 1408 33.4
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 1.5e-171 608.2 1496 31.4
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 7.6e-171 605.9 1424 33.1
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 7.6e-171 605.9 1476 31.2
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 6.4e-170 602.8 1372 33.1
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.5e-169 599.7 1404 32.4
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 7.1e-169 599.4 1372 32.5
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 9.3e-169 599.0 1370 32.8
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.6e-168 598.2 1400 32.5
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 7.9e-168 595.9 1374 32.5
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 1.0e-167 595.5 1401 31.9
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 1.0e-167 595.5 1400 32.6
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 3.0e-167 594.0 1441 31.6
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 6.7e-167 592.8 1423 32.3
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 5.6e-166 589.7 1421 32.9
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 7.4e-166 589.3 1376 32.3
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 4.8e-165 586.6 1372 32.2
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 1.1e-164 585.5 1454 31.7
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 1.2e-163 582.0 1398 32.2
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 5.5e-161 573.2 1434 32.1
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 1.6e-160 571.6 1418 31.7
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 6.0e-160 569.7 1259 31.9
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 5.1e-159 566.6 1405 31.7
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 9.6e-158 562.4 1448 30.5
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 2.8e-157 560.8 1406 31.9
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 1.2e-152 545.4 1511 29.9
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 8.7e-151 539.3 1546 29.4
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 9.7e-150 535.8 1379 32.3
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 2.6e-147 527.7 1205 31.0
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 3.7e-141 507.3 1413 30.1
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 3.2e-137 494.2 1632 28.4
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 1.8e-127 461.8 1164 30.2
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 1.1e-124 452.6 976 32.9
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.9e-121 441.8 1066 31.4
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 4.4e-118 430.6 1144 29.8
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 7.5e-118 429.9 1057 31.4
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.6e-115 422.2 1065 31.4
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 2.2e-109 401.7 1380 27.5
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.2e-107 396.0 808 32.9
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 2.0e-107 395.2 726 36.2
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 8.9e-103 379.8 887 32.5
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.6e-99 367.5 671 36.4
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 5.2e-95 354.0 728 33.2
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 4.9e-85 320.9 856 30.4
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 8.9e-79 300.1 1367 24.6
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.1e-76 293.1 489 39.1
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.5e-73 282.0 472 37.3
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 1.4e-68 266.2 620 33.1
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 3.1e-63 248.4 570 33.0
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 5.3e-63 247.7 567 32.8
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 1.7e-61 242.7 524 32.8
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.5e-59 235.0 472 36.4
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 2.1e-56 225.7 1421 23.9
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 3.1e-55 221.9 697 30.6
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 3.4e-54 218.4 443 33.9
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.4e-54 218.4 448 33.7
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.5e-54 218.0 376 40.4
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 2.0e-46 192.6 1221 24.6
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 1.8e-42 179.5 338 34.0
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 6.9e-39 167.5 396 30.3
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 6.5e-37 161.0 477 30.6
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.5e-37 160.6 155 52.3
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 2.7e-35 155.6 769 25.9
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 5.3e-31 141.4 227 39.6
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 8.5e-29 134.0 567 26.3
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.9e-28 132.9 287 33.1
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.2e-28 132.1 138 46.4
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 4.7e-27 128.3 161 47.8
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 2.4e-23 115.9 186 41.4
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 3.1e-23 115.5 129 45.7
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 4.5e-22 111.7 383 27.7
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.5e-20 105.9 354 25.7
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 5.2e-18 98.2 256 30.9
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 6.7e-18 97.8 419 26.3
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 1.1e-17 97.1 268 34.3
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 1.3e-16 93.6 153 36.6
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.2e-14 87.0 83 49.4
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 5.0e-13 81.6 133 34.6
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-11 77.0 113 35.4
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 3.6e-11 75.5 143 32.9
Cfa021688 Carpinus fangiana HOM05D004277 ORTHO05D005148 4.7e-11 75.1 401 26.2
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 1.8e-10 73.2 283 31.1
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 1.1e-07 63.9 197 31.5
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 4.1e-07 62.0 67 44.8
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 7.0e-07 61.2 118 32.2
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 9.1e-07 60.8 113 38.1
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.0e-06 59.7 145 28.3
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 3.5e-06 58.9 108 33.3
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 5.9e-06 58.2 231 24.2


User provided reference genes

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