Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_1890 Physcomitrium patens HOM05D000104 ORTHO05D314323 2.2e-51 205.3 100 100.0
Pp3c15_23590 Physcomitrium patens HOM05D000104 ORTHO05D008568 1.1e-13 80.1 50 80.0
ATR0736G017 Amborella trichopoda HOM05D000104 ORTHO05D008568 9.0e-13 77.0 50 76.0
MD10G1181200 Malus domestica HOM05D000104 ORTHO05D008568 1.5e-12 76.3 46 82.6
Os01g0102800 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D008568 1.5e-12 76.3 44 84.1
Prupe.8G221300 Prunus persica HOM05D000104 ORTHO05D008568 2.0e-12 75.9 57 68.4
Sed0001144 Sechium edule HOM05D000104 ORTHO05D008568 2.0e-12 75.9 50 74.0
THA.LOC104804044 Tarenaya hassleriana HOM05D000104 ORTHO05D008568 2.0e-12 75.9 53 73.6
ClCG00G001480 Citrullus lanatus HOM05D000104 ORTHO05D008568 2.6e-12 75.5 50 74.0
ClCG07G001160 Citrullus lanatus HOM05D000104 ORTHO05D008568 2.6e-12 75.5 50 74.0
MELO3C012868.2 Cucumis melo HOM05D000104 ORTHO05D008568 2.6e-12 75.5 50 74.0
CsaV3_3G022110 Cucumis sativus L. HOM05D000104 ORTHO05D008568 2.6e-12 75.5 50 74.0
FvH4_2g21200 Fragaria vesca HOM05D000104 ORTHO05D008568 2.6e-12 75.5 50 76.0
FAN15G3096 Fragaria x ananassa HOM05D000104 ORTHO05D008568 2.6e-12 75.5 50 76.0
FAN20G0134 Fragaria x ananassa HOM05D000104 ORTHO05D008568 2.6e-12 75.5 50 76.0
FAN24G3224 Fragaria x ananassa HOM05D000104 ORTHO05D008568 2.6e-12 75.5 50 76.0
Duzib138G0599 Durio zibethinus HOM05D000104 ORTHO05D008568 3.4e-12 75.1 55 69.1
HPP92_009781 Vanilla planifolia HOM05D000104 ORTHO05D008568 3.4e-12 75.1 57 66.7
Actinidia07307 Actinidia chinensis HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Aa31LG2G21880 Aethionema arabicum HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
Aqoxy2G03678 Aquilegia oxysepala HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
AL3G53180 Arabidopsis lyrata HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
AT2G18760 Arabidopsis thaliana HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
arahy.Tifrunner.gnm1.ann1.37VRS2 Arachis hypogaea HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
arahy.Tifrunner.gnm1.ann1.Y72JU7 Arachis hypogaea HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
CSS0013286 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
CANSAT01G0880 Cannabis sativa HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Carub.0003s3303 Capsella rubella HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
CAN.G1855.3 Capsicum annuum HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
CARHR109360 Cardamine hirsuta HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
Cpa.g.sc165.16 Carica papaya HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
CDE04G2235 Ceratophyllum demersum HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Ca_09670_v3 Cicer arietinum L. HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
COL.COLO4_04021 Corchorus olitorius HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
Dinv34639 Davidia involucrata HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
ECA247G0422 Erigeron canadensis HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Thhalv10022523m.g Eutrema salsugineum HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
FAN27G2543 Fragaria x ananassa HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Glyma.10G038300 Glycine max HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
Glyma.13G124600 Glycine max HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
Gohir.A08G191100 Gossypium hirsutum HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Gohir.D08G209100 Gossypium hirsutum HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
Gorai.004G221400 Gossypium raimondii HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
HanXRQChr10g0280821 Helianthus annuus HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Hma1.2p1_0576F.1_g181920 Hydrangea macrophylla HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Hma1.2p1_0576F.1_g181930 Hydrangea macrophylla HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Lsat_1_v5_gn_9_10521 Lactuca sativa HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Lj1C69T5 Lonicera japonica HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Lj5g0019569 Lotus japonicus HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
Lalb_Chr02g0152571 Lupinus albus HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
MBI07_g16902_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
MD05G1194600 Malus domestica HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Medtr1g069755 Medicago truncatula HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Nn1g06879 Nelumbo nucifera HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Nitab4.5_0007062g0050 Nicotiana tabacum HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
PSO210G7140 Papaver somniferum HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Peaxi162Scf00624g00319 Petunia axillaris HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
Phvul.007G191600 Phaseolus vulgaris HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
Psat6g061320 Pisum sativum HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
PGR044G2555 Punica granatum HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
RcHm_v2.0_Chr6g0287701 Rosa chinensis HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Solyc09g066480.2 Solanum lycopersicum HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
Sopen09g028210 Solanum pennellii HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
SGA_v2.0_scaffold42G16196 Striga asiatica HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
Thecc.01G255700 Theobroma cacao HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
TPR.G5864 Trifolium pratense HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
TAR362G0397 Trochodendron aralioides HOM05D000104 ORTHO05D008568 4.5e-12 74.7 44 84.1
VMungo0720G2644 Vigna mungo HOM05D000104 ORTHO05D008568 4.5e-12 74.7 51 74.5
EL10As5g23480 Beta vulgaris HOM05D000104 ORTHO05D008568 5.8e-12 74.3 50 74.0
Zm00001eb127010 Zea mays HOM05D000104 ORTHO05D008568 5.8e-12 74.3 44 81.8
Oeu039673.1 Olea europaea HOM05D000104 ORTHO05D008568 7.6e-12 73.9 50 72.0
Atru.chr5.1731 Acer truncatum HOM05D000104 ORTHO05D008568 1.0e-11 73.6 44 84.1
A03p58270 Brassica napus HOM05D000104 ORTHO05D008568 1.0e-11 73.6 51 72.5
C07p56300 Brassica napus HOM05D000104 ORTHO05D008568 1.0e-11 73.6 51 72.5
BolC7t46109H Brassica oleracea HOM05D000104 ORTHO05D008568 1.0e-11 73.6 51 72.5
BraA03t14890Z Brassica rapa HOM05D000104 ORTHO05D008568 1.0e-11 73.6 51 72.5
CiPaw.03G266400 Carya illinoinensis HOM05D000104 ORTHO05D008568 1.0e-11 73.6 51 72.5
AUR62011855 Chenopodium quinoa HOM05D000104 ORTHO05D008568 1.0e-11 73.6 44 81.8
AUR62024700 Chenopodium quinoa HOM05D000104 ORTHO05D008568 1.0e-11 73.6 44 81.8
DCAR_018495 Daucus carota HOM05D000104 ORTHO05D008568 1.0e-11 73.6 44 81.8
Manes.13G035800 Manihot esculenta HOM05D000104 ORTHO05D008568 1.0e-11 73.6 51 72.5
QL09p039652 Quercus lobata HOM05D000104 ORTHO05D008568 1.0e-11 73.6 51 72.5
Rhsim13G0036300 Rhododendron simsii HOM05D000104 ORTHO05D008568 1.0e-11 73.6 44 81.8
Sabra05G0174900 Salix brachista HOM05D000104 ORTHO05D008568 1.0e-11 73.6 51 72.5
Sc24g0003180 Simmondsia chinensis HOM05D000104 ORTHO05D008568 1.0e-11 73.6 44 81.8
TWI12G0577 Tripterygium wilfordii HOM05D000104 ORTHO05D008568 1.0e-11 73.6 51 72.5
TAR633G1665 Trochodendron aralioides HOM05D000104 ORTHO05D008568 1.0e-11 73.6 44 81.8
vmacro02676 Vaccinium macrocarpon HOM05D000104 ORTHO05D008568 1.0e-11 73.6 44 81.8
Ah.02g112060 Amaranthus hybridus HOM05D000104 ORTHO05D008568 1.3e-11 73.2 50 72.0
Cfa002445 Carpinus fangiana HOM05D000104 ORTHO05D008568 1.7e-11 72.8 51 72.5
Ciclev10018548m.g Citrus clementina HOM05D000104 ORTHO05D008568 1.7e-11 72.8 51 72.5
PGSC0003DMG400010292 Solanum tuberosum HOM05D000104 ORTHO05D008568 1.7e-11 72.8 51 72.5
CBR_g39569 Chara braunii HOM05D000104 ORTHO05D008568 2.2e-11 72.4 44 79.5
Cc01_g18180 Coffea canephora HOM05D000104 ORTHO05D008568 2.2e-11 72.4 44 79.5
Eucgr.K03253 Eucalyptus grandis HOM05D000104 ORTHO05D008568 2.2e-11 72.4 44 81.8
SEGI_32379 Sequoiadendron giganteum HOM05D000104 ORTHO05D008568 2.2e-11 72.4 44 79.5
MSTRG.12529 Avicennia marina HOM05D000104 ORTHO05D008568 3.8e-11 71.6 51 72.5
SalBow6G2605 Salvia bowleyana HOM05D000104 ORTHO05D008568 3.8e-11 71.6 51 72.5
Sp1g16640 Schrenkiella parvula HOM05D000104 ORTHO05D008568 3.8e-11 71.6 51 70.6
GSVIVG01028359001 Vitis vinifera HOM05D000104 ORTHO05D008568 3.8e-11 71.6 44 81.8
Mapoly0036s0084 Marchantia polymorpha HOM05D000104 ORTHO05D008568 4.9e-11 71.2 50 68.0
Potri.005G226500 Populus trichocarpa HOM05D000104 ORTHO05D008568 6.5e-11 70.9 51 70.6
Haze_24651 Corylus avellana HOM05D000104 ORTHO05D008568 8.4e-11 70.5 51 70.6
Migut.N02212 Erythranthe guttata HOM05D000104 ORTHO05D008568 1.4e-10 69.7 44 79.5
SMO011G0002 Selaginella moellendorffii HOM05D000104 ORTHO05D008568 1.4e-10 69.7 44 79.5
SHI09765 Sapria himalayana HOM05D000104 ORTHO05D008568 3.2e-10 68.6 65 56.9
unitig_46.g18342 Utricularia gibba HOM05D000104 ORTHO05D008568 7.1e-10 67.4 44 75.0
AagrBONN_evm.TU.Sc2ySwM_117.1591 Anthoceros agrestis HOM05D000104 ORTHO05D008568 3.5e-09 65.1 44 72.7
MCO05G027 Micromonas commoda HOM05D000104 ORTHO05D008568 4.6e-09 64.7 53 60.4
Cre06.g270850 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D008568 1.3e-08 63.2 44 70.5
PRCOL_00006245 Prasinoderma coloniale HOM05D000104 ORTHO05D008568 1.9e-07 59.3 44 61.4
Cfa026102 Carpinus fangiana HOM05D000104 ORTHO05D008568 9.6e-07 57.0 44 61.4


User provided reference genes

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