Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_17940 Physcomitrium patens HOM05D002384 ORTHO05D002498 6.0e-86 321.2 220 100.0
Pp3c22_23130 Physcomitrium patens HOM05D002384 ORTHO05D002498 3.6e-70 268.9 193 99.0
Pp3c22_17830 Physcomitrium patens HOM05D002384 ORTHO05D002498 9.4e-55 217.6 206 80.6
Pp3c19_12520 Physcomitrium patens HOM05D002384 ORTHO05D002498 5.2e-53 211.8 206 79.1
Pp3c19_12480 Physcomitrium patens HOM05D002384 ORTHO05D002498 1.5e-52 210.3 210 77.6
Mapoly0159s0017 Marchantia polymorpha HOM05D002384 ORTHO05D002498 1.8e-34 150.2 194 70.1
SEGI_40062 Sequoiadendron giganteum HOM05D002384 ORTHO05D002498 2.8e-30 136.3 194 67.0
AagrBONN_evm.TU.Sc2ySwM_362.2004 Anthoceros agrestis HOM05D002384 ORTHO05D002498 5.2e-29 132.1 206 63.6
SEGI_25031 Sequoiadendron giganteum HOM05D002384 ORTHO05D002498 6.8e-29 131.7 207 59.4
Pp3c8_20710 Physcomitrium patens HOM05D002384 ORTHO05D002498 3.8e-24 115.9 201 46.8
ATR0829G226 Amborella trichopoda HOM05D002384 ORTHO05D002498 3.6e-22 109.4 191 60.7
Nn1g09145 Nelumbo nucifera HOM05D002384 ORTHO05D002498 2.3e-21 106.7 193 62.7
Os04g0602300 Oryza sativa ssp. japonica HOM05D002384 ORTHO05D002498 2.3e-21 106.7 201 49.3
Hma1.2p1_1000F.1_g246470 Hydrangea macrophylla HOM05D002384 ORTHO05D002498 1.7e-19 100.5 193 56.0
Potri.003G104500 Populus trichocarpa HOM05D002384 ORTHO05D002498 2.2e-19 100.1 192 58.9
Dinv09436 Davidia involucrata HOM05D002384 ORTHO05D002498 2.9e-19 99.8 205 56.6
GSVIVG01036939001 Vitis vinifera HOM05D002384 ORTHO05D002498 4.9e-19 99.0 188 54.8
Potri.001G129900 Populus trichocarpa HOM05D002384 ORTHO05D002498 2.4e-18 96.7 192 59.4
Sabra01G0100400 Salix brachista HOM05D002384 ORTHO05D002498 2.4e-18 96.7 199 59.3
HPP92_007124 Vanilla planifolia HOM05D002384 ORTHO05D002498 5.4e-18 95.5 194 56.7
Thecc.03G324600 Theobroma cacao HOM05D002384 ORTHO05D002498 9.2e-18 94.7 197 56.9
Prupe.5G017700 Prunus persica HOM05D002384 ORTHO05D002498 2.7e-17 93.2 198 55.6
CSS0046191 Camellia sinensis var. sinensis HOM05D002384 ORTHO05D002498 1.3e-16 90.9 203 47.8
CiPaw.11G104500 Carya illinoinensis HOM05D002384 ORTHO05D002498 1.3e-16 90.9 203 53.2
TPR.G17241 Trifolium pratense HOM05D002384 ORTHO05D002498 1.7e-16 90.5 191 50.3
SEGI_03721 Sequoiadendron giganteum HOM05D002384 ORTHO05D002498 2.3e-16 90.1 205 54.6
SEGI_11693 Sequoiadendron giganteum HOM05D002384 ORTHO05D002498 2.3e-16 90.1 205 54.6
MD06G1021000 Malus domestica HOM05D002384 ORTHO05D002498 3.9e-16 89.4 193 48.7
Ciclev10002156m.g Citrus clementina HOM05D002384 ORTHO05D002498 5.0e-16 89.0 192 59.9
FAN08G3570 Fragaria x ananassa HOM05D002384 ORTHO05D002498 5.0e-16 89.0 197 53.8
Medtr5g026540 Medicago truncatula HOM05D002384 ORTHO05D002498 8.6e-16 88.2 196 51.0
TWI34G1613 Tripterygium wilfordii HOM05D002384 ORTHO05D002498 1.5e-15 87.4 197 54.8
FvH4_5g24280 Fragaria vesca HOM05D002384 ORTHO05D002498 1.9e-15 87.0 197 54.3
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 1.9e-15 87.0 193 48.7
VMungo1215G1634 Vigna mungo HOM05D002384 ORTHO05D002498 3.3e-15 86.3 196 47.4
Duzib187G1706 Durio zibethinus HOM05D002384 ORTHO05D002498 5.6e-15 85.5 196 57.7
Glyma.01G150500 Glycine max HOM05D002384 ORTHO05D002498 9.5e-15 84.7 197 46.7
FAN04G0332 Fragaria x ananassa HOM05D002384 ORTHO05D002498 1.6e-14 84.0 197 53.8
CANSAT21G2144 Cannabis sativa HOM05D002384 ORTHO05D002498 2.1e-14 83.6 202 46.0
Ca_25080_v3 Cicer arietinum L. HOM05D002384 ORTHO05D002498 3.6e-14 82.8 193 48.7
Zm00001eb071780 Zea mays HOM05D002384 ORTHO05D002498 4.7e-14 82.4 191 49.7
Gohir.D08G167600 Gossypium hirsutum HOM05D002384 ORTHO05D002498 6.2e-14 82.0 193 50.8
Gorai.004G174900 Gossypium raimondii HOM05D002384 ORTHO05D002498 8.0e-14 81.6 193 49.7
Cpa.g.sc137.19 Carica papaya HOM05D002384 ORTHO05D002498 1.0e-13 81.3 198 55.1
FAN18G1735 Fragaria x ananassa HOM05D002384 ORTHO05D002498 1.0e-13 81.3 197 54.3
Phvul.002G126400 Phaseolus vulgaris HOM05D002384 ORTHO05D002498 1.0e-13 81.3 199 45.7
arahy.Tifrunner.gnm1.ann1.9C23R3 Arachis hypogaea HOM05D002384 ORTHO05D002498 1.4e-13 80.9 197 57.4
arahy.Tifrunner.gnm1.ann1.PWAL8M Arachis hypogaea HOM05D002384 ORTHO05D002498 1.4e-13 80.9 197 57.4
Lalb_Chr09g0325171 Lupinus albus HOM05D002384 ORTHO05D002498 1.8e-13 80.5 200 49.5
Psat2g143320 Pisum sativum HOM05D002384 ORTHO05D002498 3.1e-13 79.7 194 52.1
RcHm_v2.0_Chr7g0214511 Rosa chinensis HOM05D002384 ORTHO05D002498 6.8e-13 78.6 196 46.9
EL10Ac5g11892 Beta vulgaris HOM05D002384 ORTHO05D002498 8.9e-13 78.2 200 35.0
Manes.17G004700 Manihot esculenta HOM05D002384 ORTHO05D002498 1.2e-12 77.8 190 51.1
CDE06G2499 Ceratophyllum demersum HOM05D002384 ORTHO05D002498 1.5e-12 77.4 200 53.5
Haze_08002 Corylus avellana HOM05D002384 ORTHO05D002498 2.0e-12 77.0 201 49.8
Peaxi162Scf00045g01332 Petunia axillaris HOM05D002384 ORTHO05D002498 3.4e-12 76.3 207 45.4
PGR042G0760 Punica granatum HOM05D002384 ORTHO05D002498 3.4e-12 76.3 198 55.1
DCAR_000701 Daucus carota HOM05D002384 ORTHO05D002498 5.8e-12 75.5 206 43.7
Gohir.A08G146500 Gossypium hirsutum HOM05D002384 ORTHO05D002498 5.8e-12 75.5 197 52.8
Lj2g0013596 Lotus japonicus HOM05D002384 ORTHO05D002498 5.8e-12 75.5 196 50.0
Actinidia03319 Actinidia chinensis HOM05D002384 ORTHO05D002498 9.8e-12 74.7 206 47.1
COL.COLO4_37235 Corchorus olitorius HOM05D002384 ORTHO05D002498 1.3e-11 74.3 188 45.7
Eucgr.E01205 Eucalyptus grandis HOM05D002384 ORTHO05D002498 1.7e-11 73.9 198 50.5
Solyc08g005900.4 Solanum lycopersicum HOM05D002384 ORTHO05D002498 1.7e-11 73.9 209 44.0
Sopen08g001870 Solanum pennellii HOM05D002384 ORTHO05D002498 2.2e-11 73.6 209 44.0
CBR_g49304 Chara braunii HOM05D002384 ORTHO05D002498 2.9e-11 73.2 183 51.9
Actinidia25719 Actinidia chinensis HOM05D002384 ORTHO05D002498 8.3e-11 71.6 206 52.4
MSTRG.1745 Avicennia marina HOM05D002384 ORTHO05D002498 1.1e-10 71.2 206 42.2
CDE04G1692 Ceratophyllum demersum HOM05D002384 ORTHO05D002498 1.4e-10 70.9 193 51.8
Hund14320 Selenicereus undatus HOM05D002384 ORTHO05D002498 2.4e-10 70.1 203 42.9
Nitab4.5_0000860g0010 Nicotiana tabacum HOM05D002384 ORTHO05D002498 3.2e-10 69.7 223 39.5
Nitab4.5_0008438g0050 Nicotiana tabacum HOM05D002384 ORTHO05D002498 3.2e-10 69.7 234 38.9
HanXRQChr03g0082381 Helianthus annuus HOM05D002384 ORTHO05D002498 4.1e-10 69.3 194 43.8
Lj8P407T6 Lonicera japonica HOM05D002384 ORTHO05D002498 7.0e-10 68.6 192 47.9
Ca_05943_v3 Cicer arietinum L. HOM05D002384 ORTHO05D002498 1.2e-09 67.8 190 44.7
Migut.E01394 Erythranthe guttata HOM05D002384 ORTHO05D002498 1.6e-09 67.4 192 42.2
Nn3g19215 Nelumbo nucifera HOM05D002384 ORTHO05D002498 4.6e-09 65.9 128 42.2
CAN.G1741.9 Capsicum annuum HOM05D002384 ORTHO05D002498 1.3e-08 64.3 206 41.3
SMO134G0042 Selaginella moellendorffii HOM05D002384 ORTHO05D002498 1.3e-08 64.3 196 52.6
PGSC0003DMG400004470 Solanum tuberosum HOM05D002384 ORTHO05D002498 1.3e-08 64.3 201 40.8
SGA_v2.0_scaffold144G35823 Striga asiatica HOM05D000094 ORTHO05D002063 6.6e-08 62.0 193 38.3
MBI04_g30772_MAGBIO Magnolia biondii HOM05D002384 ORTHO05D002498 8.6e-08 61.6 51 64.7
CsaV3_3G033700 Cucumis sativus L. HOM05D002384 ORTHO05D002498 9.5e-07 58.2 191 50.3
Phvul.010G000200 Phaseolus vulgaris HOM05D002384 ORTHO05D002498 9.5e-07 58.2 90 65.6
Sabra16G0113400 Salix brachista HOM05D002384 ORTHO05D002498 9.5e-07 58.2 190 45.3
VMungo0331G0850 Vigna mungo HOM05D002384 ORTHO05D002498 9.5e-07 58.2 90 65.6
COL.COLO4_14521 Corchorus olitorius HOM05D002384 ORTHO05D002498 1.2e-06 57.8 90 65.6
Lj3g0000201 Lotus japonicus HOM05D002384 ORTHO05D002498 1.2e-06 57.8 90 65.6
TAR369G0253 Trochodendron aralioides HOM05D002384 ORTHO05D002498 1.2e-06 57.8 90 65.6
MELO3C009160.2 Cucumis melo HOM05D002384 ORTHO05D002498 1.6e-06 57.4 190 48.9
Thecc.05G014800 Theobroma cacao HOM05D002384 ORTHO05D002498 1.6e-06 57.4 175 44.6
Dinv37461 Davidia involucrata HOM05D002384 ORTHO05D002498 2.1e-06 57.0 179 51.4
ECA240G0989 Erigeron canadensis HOM05D002384 ORTHO05D002498 2.1e-06 57.0 200 43.0
Nn2g10859 Nelumbo nucifera HOM05D002384 ORTHO05D002498 2.1e-06 57.0 88 68.2
Potri.016G117300 Populus trichocarpa HOM05D002384 ORTHO05D002498 2.1e-06 57.0 190 43.2
Duzib128G2037 Durio zibethinus HOM05D002384 ORTHO05D002498 2.8e-06 56.6 175 42.9
Lalb_Chr12g0206991 Lupinus albus HOM05D002384 ORTHO05D002498 2.8e-06 56.6 90 62.2
Lsat_1_v5_gn_5_61301 Lactuca sativa HOM05D002384 ORTHO05D002498 3.6e-06 56.2 195 45.6
Manes.09G106100 Manihot esculenta HOM05D002384 ORTHO05D002498 3.6e-06 56.2 89 67.4
MD12G1168300 Malus domestica HOM05D002384 ORTHO05D002498 4.7e-06 55.8 190 44.2
Sc07g0008290 Simmondsia chinensis HOM05D002384 ORTHO05D002498 4.7e-06 55.8 198 41.4
Aqoxy4G02541 Aquilegia oxysepala HOM05D002384 ORTHO05D002498 6.2e-06 55.5 203 46.8
Gohir.D09G161250 Gossypium hirsutum HOM05D002384 ORTHO05D002498 6.2e-06 55.5 89 64.0
Gohir.D09G161300 Gossypium hirsutum HOM05D002384 ORTHO05D002498 6.2e-06 55.5 89 64.0
QL07p035444 Quercus lobata HOM05D002384 ORTHO05D002498 6.2e-06 55.5 191 37.7
Atru.chr8.2254 Acer truncatum HOM05D002384 ORTHO05D002498 8.1e-06 55.1 90 64.4
Cc06_g01240 Coffea canephora HOM05D002384 ORTHO05D002498 8.1e-06 55.1 90 62.2
Sed0020312 Sechium edule HOM05D002384 ORTHO05D002498 8.1e-06 55.1 195 42.1


User provided reference genes

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