Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 2.2e-73 278.9 142 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 8.8e-30 134.0 137 50.4
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 2.5e-24 115.9 139 43.9
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 3.2e-24 115.5 136 43.4
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 7.2e-24 114.4 138 43.5
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 9.4e-24 114.0 141 40.4
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 9.4e-24 114.0 140 40.7
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.6e-23 113.2 132 44.7
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.6e-23 113.2 138 43.5
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.6e-23 113.2 132 44.7
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.6e-23 113.2 132 44.7
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 1.6e-23 113.2 132 44.7
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 1.6e-23 113.2 136 42.6
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 2.1e-23 112.8 137 45.3
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 2.1e-23 112.8 135 43.0
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 2.1e-23 112.8 142 40.8
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.7e-23 111.7 133 44.4
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 6.1e-23 111.3 135 44.4
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 6.1e-23 111.3 142 40.8
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 6.1e-23 111.3 141 39.0
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.1e-23 111.3 133 43.6
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 8.0e-23 110.9 139 41.7
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 1.0e-22 110.5 139 40.3
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 1.0e-22 110.5 139 39.6
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.0e-22 110.5 139 41.7
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.0e-22 110.5 132 40.2
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.4e-22 110.2 140 40.7
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.4e-22 110.2 140 39.3
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 1.4e-22 110.2 136 43.4
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.4e-22 110.2 140 40.7
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.8e-22 109.8 140 39.3
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.8e-22 109.8 142 38.7
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.8e-22 109.8 139 39.6
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.8e-22 109.8 139 40.3
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 2.3e-22 109.4 138 39.1
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.3e-22 109.4 139 38.8
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 2.3e-22 109.4 132 40.2
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 2.3e-22 109.4 139 41.0
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.3e-22 109.4 135 43.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 3.0e-22 109.0 137 41.6
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 5.2e-22 108.2 132 40.2
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 5.2e-22 108.2 136 43.4
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.2e-22 108.2 133 42.1
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 5.2e-22 108.2 135 42.2
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 5.2e-22 108.2 137 40.1
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 5.2e-22 108.2 132 42.4
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 6.8e-22 107.8 133 41.4
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 6.8e-22 107.8 136 40.4
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 8.8e-22 107.5 133 40.6
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 8.8e-22 107.5 133 40.6
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 8.8e-22 107.5 140 40.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 8.8e-22 107.5 139 38.8
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 8.8e-22 107.5 136 39.7
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 8.8e-22 107.5 138 41.3
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 8.8e-22 107.5 136 38.2
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.2e-21 107.1 136 39.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.2e-21 107.1 133 40.6
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.2e-21 107.1 139 38.8
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 1.5e-21 106.7 143 39.2
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.5e-21 106.7 133 41.4
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 1.5e-21 106.7 140 39.3
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 1.5e-21 106.7 142 39.4
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 2.0e-21 106.3 136 35.3
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 2.0e-21 106.3 133 40.6
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 2.0e-21 106.3 139 37.4
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.0e-21 106.3 136 40.4
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.0e-21 106.3 136 40.4
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 2.6e-21 105.9 139 40.3
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 2.6e-21 105.9 142 38.7
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.4e-21 105.5 140 37.9
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.4e-21 105.5 137 38.7
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 3.4e-21 105.5 139 38.8
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 3.4e-21 105.5 136 39.0
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 3.4e-21 105.5 132 38.6
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 4.4e-21 105.1 136 40.4
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 4.4e-21 105.1 140 41.4
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 4.4e-21 105.1 144 39.6
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 5.7e-21 104.8 139 41.0
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.7e-21 104.8 139 36.7
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 5.7e-21 104.8 139 36.7
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 5.7e-21 104.8 136 39.7
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.7e-21 104.8 136 39.7
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.7e-21 104.8 136 39.7
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 7.5e-21 104.4 139 36.7
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 7.5e-21 104.4 140 39.3
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 7.5e-21 104.4 139 36.7
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.5e-21 104.4 132 40.9
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 7.5e-21 104.4 132 40.2
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 7.5e-21 104.4 136 39.0
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 9.8e-21 104.0 135 38.5
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 9.8e-21 104.0 128 40.6
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 9.8e-21 104.0 136 39.7
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.3e-20 103.6 137 38.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.3e-20 103.6 139 37.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.3e-20 103.6 135 39.3
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.3e-20 103.6 139 38.1
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.3e-20 103.6 139 38.1
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.3e-20 103.6 137 38.7
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.7e-20 103.2 132 37.9
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 2.8e-20 102.4 139 37.4
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.8e-20 102.4 136 38.2
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.8e-20 102.4 139 38.1
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 3.7e-20 102.1 149 38.9
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 4.8e-20 101.7 139 38.1
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 6.3e-20 101.3 135 40.0
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 8.3e-20 100.9 137 38.0
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 8.3e-20 100.9 136 36.0
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.1e-19 100.5 138 36.2
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.1e-19 100.5 129 38.0
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.1e-19 100.5 143 37.1
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.1e-19 100.5 139 38.1
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 1.4e-19 100.1 136 38.2
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.8e-19 99.8 131 39.7
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 2.4e-19 99.4 151 36.4
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 2.4e-19 99.4 145 37.2
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 5.4e-19 98.2 132 37.1
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 7.0e-19 97.8 140 35.7
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 9.1e-19 97.4 146 34.9
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 9.1e-19 97.4 141 36.9
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 1.2e-18 97.1 132 36.4
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 2.0e-18 96.3 149 34.2
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.7e-18 95.9 135 37.0
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 2.7e-18 95.9 132 37.1
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.5e-18 95.5 137 35.8
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.0e-17 94.0 147 36.1
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.3e-17 93.6 137 36.5
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 2.3e-17 92.8 140 38.6
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.5e-16 90.1 137 33.6
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 1.5e-16 90.1 137 33.6
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.9e-16 89.7 137 33.6
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.9e-16 89.7 137 33.6
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.9e-16 89.7 137 33.6
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.9e-16 89.7 137 34.3
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 2.5e-16 89.4 166 33.7
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 4.2e-16 88.6 134 35.8
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 4.2e-16 88.6 106 40.6
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 4.2e-16 88.6 106 40.6
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.8e-15 85.9 152 34.2
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 8.0e-15 84.3 105 36.2
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 3.0e-14 82.4 107 39.3
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 2.0e-13 79.7 123 31.7
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 2.0e-13 79.7 132 36.4
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 2.6e-13 79.3 145 33.1
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 2.6e-13 79.3 211 27.5
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 4.4e-13 78.6 137 33.6
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 4.4e-13 78.6 78 47.4
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 5.7e-13 78.2 78 48.7
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 7.5e-13 77.8 80 45.0
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 7.5e-13 77.8 136 29.4
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.7e-12 76.6 99 38.4
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 1.7e-12 76.6 138 35.5
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 2.2e-12 76.3 137 31.4
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 3.7e-12 75.5 123 34.1
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 3.7e-12 75.5 123 34.1
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.7e-12 75.5 107 36.4
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 4.9e-12 75.1 105 35.2
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 6.3e-12 74.7 77 44.2
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-11 73.9 183 29.0
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 3.1e-11 72.4 77 44.2
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.1e-11 72.0 78 44.9
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.7e-10 69.3 150 30.7
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 7.8e-10 67.8 93 39.8
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.0e-09 67.4 75 44.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.3e-09 66.2 124 32.3
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 5.0e-09 65.1 121 33.1
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 8.9e-06 54.3 135 28.1


User provided reference genes

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