Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 4.1e-139 498.0 251 100.0
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 2.7e-122 442.2 249 86.3
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 2.3e-110 402.5 251 78.5
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 1.1e-104 383.6 251 73.3
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 1.4e-102 376.7 251 72.1
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 3.1e-102 375.6 249 71.5
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 5.2e-102 374.8 249 72.7
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 5.2e-102 374.8 249 71.9
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 6.8e-102 374.4 249 71.9
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 6.8e-102 374.4 249 71.9
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 8.9e-102 374.0 249 72.3
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 8.9e-102 374.0 249 72.3
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 8.9e-102 374.0 249 72.7
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.2e-101 373.6 249 72.7
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 1.5e-101 373.2 251 72.1
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 2.0e-101 372.9 249 71.9
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 3.4e-101 372.1 251 71.7
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 4.4e-101 371.7 249 71.1
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 5.8e-101 371.3 249 73.1
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 7.6e-101 370.9 251 72.5
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 9.9e-101 370.5 251 72.9
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 1.3e-100 370.2 249 71.5
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 1.3e-100 370.2 249 71.9
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 1.7e-100 369.8 249 70.7
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 2.2e-100 369.4 249 70.7
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 2.2e-100 369.4 249 71.1
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 4.9e-100 368.2 249 70.7
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 6.4e-100 367.9 251 71.3
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 6.4e-100 367.9 251 71.3
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 6.4e-100 367.9 250 72.4
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 8.4e-100 367.5 249 70.3
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 1.4e-99 366.7 250 71.6
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 1.9e-99 366.3 249 70.3
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 2.4e-99 365.9 250 71.2
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 3.2e-99 365.5 249 71.1
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 3.2e-99 365.5 250 70.8
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 4.2e-99 365.2 250 70.4
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 4.2e-99 365.2 250 70.4
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 4.2e-99 365.2 250 70.8
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 9.3e-99 364.0 249 71.5
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 9.3e-99 364.0 250 70.4
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 9.3e-99 364.0 253 70.4
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 9.3e-99 364.0 256 70.7
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 1.6e-98 363.2 254 70.1
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 3.5e-98 362.1 249 69.5
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 6.0e-98 361.3 261 67.8
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 6.0e-98 361.3 252 69.4
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 7.8e-98 360.9 251 69.7
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 1.0e-97 360.5 252 69.4
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 1.3e-97 360.1 249 69.5
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 1.7e-97 359.8 249 69.9
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 2.3e-97 359.4 253 69.6
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 2.3e-97 359.4 249 69.9
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 2.3e-97 359.4 252 69.0
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 3.0e-97 359.0 237 75.9
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 3.0e-97 359.0 249 69.5
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 3.9e-97 358.6 249 69.5
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 5.1e-97 358.2 249 69.5
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 8.7e-97 357.5 249 69.5
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 8.7e-97 357.5 249 71.9
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 1.1e-96 357.1 250 69.6
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.5e-96 356.7 271 66.8
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 1.5e-96 356.7 255 68.2
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 1.9e-96 356.3 248 70.2
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 1.9e-96 356.3 249 69.1
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.5e-96 355.9 276 64.9
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 2.5e-96 355.9 250 69.2
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 3.3e-96 355.5 249 68.7
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 5.6e-96 354.8 249 68.3
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 1.6e-95 353.2 249 67.9
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 2.8e-95 352.4 249 68.7
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 3.6e-95 352.1 249 67.5
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 4.8e-95 351.7 249 68.3
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 6.2e-95 351.3 254 67.7
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 8.1e-95 350.9 250 69.2
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 8.1e-95 350.9 277 64.3
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 1.4e-94 350.1 249 67.5
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 1.8e-94 349.7 249 68.7
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 2.4e-94 349.4 249 67.9
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 9.0e-94 347.4 248 67.7
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 1.2e-93 347.1 254 70.5
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 7.6e-93 344.4 249 67.9
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 1.3e-92 343.6 290 61.4
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 4.2e-91 338.6 252 67.9
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 7.1e-91 337.8 252 65.5
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 1.2e-90 337.0 252 67.5
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 2.1e-90 336.3 251 65.7
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 6.0e-90 334.7 234 68.4
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 5.1e-89 331.6 257 65.4
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 1.9e-88 329.7 251 65.7
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 7.3e-88 327.8 255 63.9
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 9.6e-88 327.4 233 68.7
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 9.6e-88 327.4 233 68.7
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 9.6e-88 327.4 222 69.4
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.8e-86 323.2 222 69.4
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 2.0e-85 319.7 249 65.1
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 8.4e-84 314.3 256 62.5
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 7.1e-83 311.2 209 71.3
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 1.0e-81 307.4 220 69.1
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.5e-80 302.8 250 62.8
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 3.3e-80 302.4 240 65.8
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 5.6e-80 301.6 249 61.0
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 2.4e-78 296.2 279 56.3
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 6.9e-78 294.7 253 62.1
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 1.2e-77 293.9 449 40.1
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 3.4e-77 292.4 252 62.7
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.7e-76 290.0 210 68.1
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 1.1e-72 277.3 190 68.9
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 3.1e-70 269.2 242 55.0
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 4.1e-70 268.9 249 57.0
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.2e-69 267.3 242 57.9
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 1.1e-67 260.8 249 55.0
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 1.4e-67 260.4 195 63.1
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 1.4e-67 260.4 251 53.8
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 2.1e-66 256.5 263 52.5
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 2.7e-66 256.1 268 52.2
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 2.7e-66 256.1 249 51.8
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 3.7e-63 245.7 335 47.2
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.8e-62 243.4 264 51.9
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 1.8e-62 243.4 202 60.4
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 5.9e-61 238.4 209 58.9
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 1.3e-60 237.3 249 53.4
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 7.9e-58 228.0 157 70.1
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 5.1e-57 225.3 208 55.8
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 1.5e-56 223.8 157 69.4
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 7.7e-53 211.5 171 62.6
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 1.1e-51 207.6 283 42.8
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 8.8e-49 198.0 140 70.7
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 4.8e-47 192.2 207 50.7
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 4.5e-45 185.7 185 55.7
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 6.5e-44 181.8 180 52.2
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 3.2e-43 179.5 115 73.9
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 8.5e-36 154.8 114 64.9
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 8.5e-36 154.8 99 74.7
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 4.0e-33 146.0 128 57.8
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 6.8e-33 145.2 91 76.9
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-29 133.3 94 71.3
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 6.5e-28 128.6 175 43.4
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 7.0e-22 108.6 249 34.5
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 5.6e-11 72.4 52 67.3


User provided reference genes

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