Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_15890 Physcomitrium patens HOM05D003560 ORTHO05D004500 0.0e+00 2268.0 1180 100.0
Pp3c19_12090 Physcomitrium patens HOM05D003560 ORTHO05D004500 0.0e+00 1835.1 1180 81.9
SMO301G0012 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 0.0e+00 1079.7 1191 52.9
Mapoly0041s0089 Marchantia polymorpha HOM05D003560 ORTHO05D004500 5.9e-289 998.0 1201 49.8
Aqoxy7G03346 Aquilegia oxysepala HOM05D003560 ORTHO05D004500 6.0e-281 971.5 1183 48.3
Nn2g14025 Nelumbo nucifera HOM05D003560 ORTHO05D004500 1.4e-277 960.3 1186 48.4
SEGI_31223 Sequoiadendron giganteum HOM05D003560 ORTHO05D004500 4.0e-277 958.7 1196 48.0
TAR636G2626 Trochodendron aralioides HOM05D003560 ORTHO05D004500 6.8e-277 958.0 1183 47.8
PSO063G7271 Papaver somniferum HOM05D003560 ORTHO05D004500 5.6e-271 938.3 1195 47.4
PSO782G3416 Papaver somniferum HOM05D003560 ORTHO05D004500 1.2e-270 937.2 1195 47.4
Manes.06G031700 Manihot esculenta HOM05D003560 ORTHO05D004500 9.9e-268 927.5 1182 47.5
Atru.chr7.14 Acer truncatum HOM05D003560 ORTHO05D004500 2.2e-267 926.4 1194 46.7
Dinv41343 Davidia involucrata HOM05D003560 ORTHO05D004500 4.9e-267 925.2 1183 46.6
Hma1.2p1_0222F.1_g093890 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 4.9e-267 925.2 1224 45.2
CiPaw.16G106900 Carya illinoinensis HOM05D003560 ORTHO05D004500 5.4e-266 921.8 1189 46.5
TAR625G0571 Trochodendron aralioides HOM05D003560 ORTHO05D004500 3.5e-265 919.1 1184 47.3
FAN22G1868 Fragaria x ananassa HOM05D003560 ORTHO05D004500 7.8e-265 917.9 1183 46.5
MD04G1049500 Malus domestica HOM05D003560 ORTHO05D004500 2.3e-264 916.4 1194 46.9
FAN12G2950 Fragaria x ananassa HOM05D003560 ORTHO05D004500 3.0e-264 916.0 1185 46.6
FAN12G4167 Fragaria x ananassa HOM05D003560 ORTHO05D004500 3.0e-264 916.0 1187 46.6
FvH4_4g10150 Fragaria vesca HOM05D003560 ORTHO05D004500 5.1e-264 915.2 1185 46.4
RcHm_v2.0_Chr4g0405611 Rosa chinensis HOM05D003560 ORTHO05D004500 2.8e-262 909.4 1185 46.1
vmacro13051 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 6.2e-262 908.3 1186 47.2
ATR0749G018 Amborella trichopoda HOM05D003560 ORTHO05D004500 3.1e-261 906.0 1195 47.0
FAN17G2275 Fragaria x ananassa HOM05D003560 ORTHO05D004500 5.2e-261 905.2 1183 46.1
Gorai.009G009100 Gossypium raimondii HOM05D003560 ORTHO05D004500 1.5e-260 903.7 1186 46.7
Prupe.1G102400 Prunus persica HOM05D003560 ORTHO05D004500 2.0e-260 903.3 1190 46.5
Migut.J01389 Erythranthe guttata HOM05D003560 ORTHO05D004500 2.6e-260 902.9 1185 44.6
Dinv42820 Davidia involucrata HOM05D003560 ORTHO05D004500 1.3e-259 900.6 1183 46.0
Dinv43280 Davidia involucrata HOM05D003560 ORTHO05D004500 1.3e-259 900.6 1183 46.0
Gohir.D05G008900 Gossypium hirsutum HOM05D003560 ORTHO05D004500 3.8e-259 899.0 1186 46.5
Glyma.17G071400 Glycine max HOM05D003560 ORTHO05D004500 1.9e-258 896.7 1184 45.8
FAN07G0247 Fragaria x ananassa HOM05D003560 ORTHO05D004500 3.2e-258 896.0 1203 45.5
Gohir.A05G008100 Gossypium hirsutum HOM05D003560 ORTHO05D004500 3.2e-258 896.0 1188 47.0
Ciclev10007284m.g Citrus clementina HOM05D003560 ORTHO05D004500 7.1e-258 894.8 1186 46.0
Thecc.09G153600 Theobroma cacao HOM05D003560 ORTHO05D004500 9.3e-258 894.4 1188 45.2
Haze_19142 Corylus avellana HOM05D003560 ORTHO05D004500 1.6e-257 893.6 1184 45.8
AagrBONN_evm.TU.Sc2ySwM_344.4294 Anthoceros agrestis HOM05D003560 ORTHO05D004500 6.0e-257 891.7 1225 45.8
Glyma.02G206500 Glycine max HOM05D003560 ORTHO05D004500 1.3e-256 890.6 1182 45.1
PGSC0003DMG400011153 Solanum tuberosum HOM05D003560 ORTHO05D004500 1.7e-256 890.2 1183 44.8
arahy.Tifrunner.gnm1.ann1.752C0V Arachis hypogaea HOM05D003560 ORTHO05D004500 3.9e-256 889.0 1182 45.9
Nitab4.5_0006744g0010 Nicotiana tabacum HOM05D003560 ORTHO05D004500 1.5e-255 887.1 1187 44.7
Peaxi162Scf00563g00417 Petunia axillaris HOM05D003560 ORTHO05D004500 1.9e-255 886.7 1181 44.3
Cc06_g14510 Coffea canephora HOM05D003560 ORTHO05D004500 3.3e-255 885.9 1187 45.1
Duzib168G0378 Durio zibethinus HOM05D003560 ORTHO05D004500 1.3e-254 884.0 1187 44.8
TPR.G24844 Trifolium pratense HOM05D003560 ORTHO05D004500 3.6e-254 882.5 1191 44.5
EL10Ac8g18909 Beta vulgaris HOM05D003560 ORTHO05D004500 4.8e-254 882.1 1183 45.0
Rhsim01G0023800 Rhododendron simsii HOM05D003560 ORTHO05D004500 6.2e-254 881.7 1185 46.5
Sopen07g002100 Solanum pennellii HOM05D003560 ORTHO05D004500 1.1e-253 880.9 1190 44.2
Hund08956 Selenicereus undatus HOM05D003560 ORTHO05D004500 1.4e-253 880.6 1189 46.3
SalBow1G5562 Salvia bowleyana HOM05D003560 ORTHO05D004500 1.8e-253 880.2 1183 45.1
Solyc07g005970.3 Solanum lycopersicum HOM05D003560 ORTHO05D004500 4.0e-253 879.0 1190 44.2
AUR62028380 Chenopodium quinoa HOM05D003560 ORTHO05D004500 5.3e-253 878.6 1186 45.2
CANSAT11G0384 Cannabis sativa HOM05D003560 ORTHO05D004500 1.5e-252 877.1 1185 45.6
Ca_21152_v3 Cicer arietinum L. HOM05D003560 ORTHO05D004500 1.5e-252 877.1 1185 44.8
SGA_v2.0_scaffold265G46080 Striga asiatica HOM05D003560 ORTHO05D004500 2.6e-252 876.3 1212 43.4
Eucgr.C00241 Eucalyptus grandis HOM05D003560 ORTHO05D004500 3.4e-252 875.9 1183 45.6
Lalb_Chr12g0198821 Lupinus albus HOM05D003560 ORTHO05D004500 7.6e-252 874.8 1180 44.6
Nitab4.5_0001036g0120 Nicotiana tabacum HOM05D003560 ORTHO05D004500 9.9e-252 874.4 1185 44.3
CARHR238630 Cardamine hirsuta HOM05D003560 ORTHO05D004500 2.2e-251 873.2 1190 45.2
Sed0017470 Sechium edule HOM05D003560 ORTHO05D004500 3.8e-251 872.5 1187 45.4
GSVIVG01023682001 Vitis vinifera HOM05D003560 ORTHO05D004500 3.8e-251 872.5 1183 45.1
Lj4g0007617 Lotus japonicus HOM05D003560 ORTHO05D004500 2.4e-250 869.8 1184 45.2
Cfa020786 Carpinus fangiana HOM05D003560 ORTHO05D004500 3.2e-250 869.4 1186 45.0
DCAR_009892 Daucus carota HOM05D003560 ORTHO05D004500 9.3e-250 867.8 1188 45.0
Thhalv10024256m.g Eutrema salsugineum HOM05D003560 ORTHO05D004500 1.6e-249 867.1 1189 45.2
Medtr4g130370 Medicago truncatula HOM05D003560 ORTHO05D004500 2.1e-249 866.7 1185 44.5
Carub.0007s0981 Capsella rubella HOM05D003560 ORTHO05D004500 6.0e-249 865.1 1193 44.5
MD13G1257100 Malus domestica HOM05D003560 ORTHO05D004500 1.0e-248 864.4 1195 44.8
CiPaw.15G164500 Carya illinoinensis HOM05D003560 ORTHO05D004500 1.3e-248 864.0 1184 45.4
Ah.09g228690 Amaranthus hybridus HOM05D003560 ORTHO05D004500 1.7e-248 863.6 1184 44.7
Phvul.003G153800 Phaseolus vulgaris HOM05D003560 ORTHO05D004500 1.7e-248 863.6 1182 43.9
MELO3C004116.2 Cucumis melo HOM05D003560 ORTHO05D004500 3.9e-248 862.4 1199 45.0
Potri.018G103000 Populus trichocarpa HOM05D003560 ORTHO05D004500 5.1e-248 862.1 1189 45.4
VMungo1215G0464 Vigna mungo HOM05D003560 ORTHO05D004500 8.7e-248 861.3 1181 43.8
QL02p094176 Quercus lobata HOM05D003560 ORTHO05D004500 1.1e-247 860.9 1181 45.2
AT4G30790 Arabidopsis thaliana HOM05D003560 ORTHO05D004500 2.5e-247 859.8 1191 44.6
CAN.G1190.4 Capsicum annuum HOM05D003560 ORTHO05D004500 1.3e-246 857.4 1198 43.9
Psat7g006640 Pisum sativum HOM05D003560 ORTHO05D004500 1.3e-246 857.4 1183 44.3
MSTRG.19664 Avicennia marina HOM05D003560 ORTHO05D004500 3.6e-246 855.9 1186 43.0
Lalb_Chr13g0300691 Lupinus albus HOM05D003560 ORTHO05D004500 2.4e-245 853.2 1190 44.1
ClCG02G014310 Citrullus lanatus HOM05D003560 ORTHO05D004500 6.9e-245 851.7 1190 44.9
BraA01t00687Z Brassica rapa HOM05D003560 ORTHO05D004500 4.5e-244 849.0 1189 44.5
CDE02G1528 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 1.3e-243 847.4 1185 44.2
A01p07380 Brassica napus HOM05D003560 ORTHO05D004500 2.9e-243 846.3 1189 44.4
Sed0019076 Sechium edule HOM05D003560 ORTHO05D004500 2.9e-243 846.3 1190 44.3
Aa31LG2G19610 Aethionema arabicum HOM05D003560 ORTHO05D004500 4.9e-243 845.5 1195 43.9
BcaC09g51868 Brassica carinata HOM05D003560 ORTHO05D004500 6.4e-243 845.1 1189 43.7
BcaNung04829 Brassica carinata HOM05D003560 ORTHO05D004500 1.1e-242 844.3 1191 44.3
BolC1t00801H Brassica oleracea HOM05D003560 ORTHO05D004500 1.1e-242 844.3 1189 43.7
C01p08140 Brassica napus HOM05D003560 ORTHO05D004500 1.9e-242 843.6 1189 43.7
SalBow1G1777 Salvia bowleyana HOM05D003560 ORTHO05D004500 7.1e-242 841.6 1185 43.1
Sp7g28660 Schrenkiella parvula HOM05D003560 ORTHO05D004500 1.6e-241 840.5 1199 44.2
A03p60310 Brassica napus HOM05D003560 ORTHO05D004500 4.6e-241 839.0 1190 44.3
HanXRQChr10g0307611 Helianthus annuus HOM05D003560 ORTHO05D004500 1.0e-240 837.8 1183 43.0
Sabra06G0137800 Salix brachista HOM05D003560 ORTHO05D004500 1.3e-240 837.4 1193 44.8
unitig_37.g12751 Utricularia gibba HOM05D003560 ORTHO05D004500 1.8e-240 837.0 1182 43.1
Duzib150G1559 Durio zibethinus HOM05D003560 ORTHO05D004500 6.7e-240 835.1 1184 43.9
BraA03t15073Z Brassica rapa HOM05D003560 ORTHO05D004500 2.5e-239 833.2 1191 44.6
BcaNung01560 Brassica carinata HOM05D003560 ORTHO05D004500 3.3e-239 832.8 1196 44.7
THA.LOC104803549 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 1.6e-238 830.5 1195 43.7
PGR102G2861 Punica granatum HOM05D003560 ORTHO05D004500 4.8e-238 828.9 1188 43.7
HanXRQChr12g0357781 Helianthus annuus HOM05D003560 ORTHO05D004500 1.1e-237 827.8 1183 42.3
THA.LOC104815517 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 1.2e-236 824.3 1202 43.4
THA.LOC104803909 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 1.5e-236 823.9 1200 43.9
CSS0046771 Camellia sinensis var. sinensis HOM05D003560 ORTHO05D004500 2.6e-236 823.2 1186 44.9
PGR114G0002 Punica granatum HOM05D003560 ORTHO05D004500 3.4e-236 822.8 1185 43.5
PGR142G1236 Punica granatum HOM05D003560 ORTHO05D004500 3.4e-236 822.8 1185 43.5
TWI32G0440 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 1.7e-235 820.5 1191 43.5
Duzib187G1514 Durio zibethinus HOM05D003560 ORTHO05D004500 3.8e-235 819.3 1188 43.4
BcaC01g01140 Brassica carinata HOM05D003560 ORTHO05D004500 8.4e-235 818.1 1199 43.4
C03p88520 Brassica napus HOM05D003560 ORTHO05D004500 8.4e-235 818.1 1199 43.5
BolC3t21162H Brassica oleracea HOM05D003560 ORTHO05D004500 8.4e-235 818.1 1199 43.4
Hma1.2p1_1084F.1_g255280 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 1.1e-234 817.8 1183 43.1
ECA234G2881 Erigeron canadensis HOM05D003560 ORTHO05D004500 1.4e-234 817.4 1189 43.1
A08p19080 Brassica napus HOM05D003560 ORTHO05D004500 4.2e-234 815.8 1196 43.7
Nn8g40053 Nelumbo nucifera HOM05D003560 ORTHO05D004500 1.2e-233 814.3 981 49.0
Lj9A721G57 Lonicera japonica HOM05D003560 ORTHO05D004500 6.0e-233 812.0 1185 43.7
AUR62025371 Chenopodium quinoa HOM05D003560 ORTHO05D004500 3.0e-232 809.7 1182 41.6
Cpa.g.sc199.20 Carica papaya HOM05D003560 ORTHO05D004500 5.1e-232 808.9 1101 43.9
SGA_v2.0_scaffold45G17008 Striga asiatica HOM05D003560 ORTHO05D004500 1.9e-231 807.0 1191 41.7
Lsat_1_v5_gn_5_89080 Lactuca sativa HOM05D003560 ORTHO05D004500 2.5e-231 806.6 1203 42.4
Os02g0179800 Oryza sativa ssp. japonica HOM05D003560 ORTHO05D004500 5.7e-231 805.4 1192 43.3
BolC7t46280H Brassica oleracea HOM05D003560 ORTHO05D004500 1.3e-230 804.3 1186 43.3
Potri.006G180800 Populus trichocarpa HOM05D003560 ORTHO05D004500 1.6e-230 803.9 1200 43.4
C07p58220 Brassica napus HOM05D003560 ORTHO05D004500 2.1e-230 803.5 1185 43.0
BraA08t33870Z Brassica rapa HOM05D003560 ORTHO05D004500 3.1e-229 799.7 1228 42.4
BcaNung02741 Brassica carinata HOM05D003560 ORTHO05D004500 4.1e-229 799.3 1186 43.3
SMO361G0456 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 1.0e-227 794.7 1183 43.6
Rhsim03G0259200 Rhododendron simsii HOM05D003560 ORTHO05D004500 2.5e-226 790.0 1184 43.0
SMO361G0185 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 3.2e-226 789.6 1183 43.3
Lsat_1_v5_gn_8_64740 Lactuca sativa HOM05D003560 ORTHO05D004500 3.9e-224 782.7 1183 42.3
Ah.14g084380 Amaranthus hybridus HOM05D003560 ORTHO05D004500 5.7e-223 778.9 1183 41.4
Zm00001eb206680 Zea mays HOM05D003560 ORTHO05D004500 5.7e-223 778.9 1195 43.0
TWI34G0709 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 1.3e-222 777.7 1187 41.2
Zm00001eb233940 Zea mays HOM05D003560 ORTHO05D004500 1.5e-220 770.8 1192 41.7
Sc14g0000980 Simmondsia chinensis HOM05D003560 ORTHO05D004500 4.5e-220 769.2 1058 44.7
ECA236G1776 Erigeron canadensis HOM05D003560 ORTHO05D004500 1.2e-217 761.1 1191 41.1
DCAR_020090 Daucus carota HOM05D003560 ORTHO05D004500 3.6e-217 759.6 1182 42.4
HanXRQChr05g0141571 Helianthus annuus HOM05D003560 ORTHO05D004500 5.1e-216 755.7 1187 40.1
AL7G21340 Arabidopsis lyrata HOM05D003560 ORTHO05D004500 5.7e-215 752.3 1186 40.6
vmacro06053 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 1.6e-209 734.2 1191 40.8
CsaV3_2G007690 Cucumis sativus L. HOM05D003560 ORTHO05D004500 1.8e-208 730.7 1062 44.1
Sabra18G0088600 Salix brachista HOM05D003560 ORTHO05D004500 6.3e-206 722.2 1185 41.1
Oeu024893.2 Olea europaea HOM05D003560 ORTHO05D004500 1.9e-194 684.1 1179 37.2
arahy.Tifrunner.gnm1.ann1.IP23DV Arachis hypogaea HOM05D003560 ORTHO05D004500 1.2e-191 674.9 799 48.4
MBI14_g31376_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 1.7e-187 661.0 681 52.3
CBR_g38482 Chara braunii HOM05D003560 ORTHO05D004500 1.3e-182 644.8 1354 36.1
HPP92_021904 Vanilla planifolia HOM05D003560 ORTHO05D004500 1.7e-182 644.4 1241 37.1
CBR_g55388 Chara braunii HOM05D003560 ORTHO05D004500 1.4e-176 624.8 1363 35.7
COL.COLO4_05033 Corchorus olitorius HOM05D003560 ORTHO05D004500 1.2e-175 621.7 908 44.4
Actinidia20936 Actinidia chinensis HOM05D003560 ORTHO05D004500 4.9e-174 616.3 889 45.2
MBI14_g08698_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 8.3e-174 615.5 862 45.4
Hma1.2p1_0222F.1_g093876 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 1.5e-138 498.4 847 38.7
Hma1.2p1_0222F.1_g093910 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 1.5e-138 498.4 847 38.7
CDE05G3326 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 4.9e-126 456.8 828 41.1
Actinidia24369 Actinidia chinensis HOM05D003560 ORTHO05D004500 2.4e-104 384.8 367 51.8
COL.COLO4_05032 Corchorus olitorius HOM05D003560 ORTHO05D004500 8.5e-78 296.6 300 48.7
MCO10G226 Micromonas commoda HOM05D003560 ORTHO05D004500 2.0e-74 285.4 757 30.3
Manes.14G113300 Manihot esculenta HOM05D003560 ORTHO05D004500 3.1e-72 278.1 300 45.3
Cre16.g651350 Chlamydomonas reinhardtii HOM05D003560 ORTHO05D004500 2.0e-71 275.4 585 33.7
PRCOL_00000855 Prasinoderma coloniale HOM05D003560 ORTHO05D004500 1.8e-67 262.3 562 31.0
Migut.K00302 Erythranthe guttata HOM05D003560 ORTHO05D004500 4.1e-48 198.0 216 45.8
vmacro06070 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 4.1e-40 171.4 234 44.4
Hma1.2p1_0222F.1_g093900 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 5.6e-37 161.0 280 42.5
Zm00001eb234440 Zea mays HOM05D003560 ORTHO05D004500 4.7e-28 131.3 146 51.4
Zm00001eb110220 Zea mays HOM05D003560 ORTHO05D004500 2.3e-22 112.5 137 48.2
Zm00001eb257740 Zea mays HOM05D003560 ORTHO05D004500 3.0e-22 112.1 136 48.5
Zm00001eb400070 Zea mays HOM05D003560 ORTHO05D004500 6.2e-20 104.4 100 58.0
TPR.G131 Trifolium pratense HOM05D003560 ORTHO05D004500 2.4e-19 102.4 235 37.0
GSVIVG01023678001 Vitis vinifera HOM05D003560 ORTHO05D004500 2.9e-17 95.5 129 43.4
RcHm_v2.0_Chr5g0033091 Rosa chinensis HOM05D003560 ORTHO05D004500 3.2e-16 92.0 74 67.6
SEGI_20080 Sequoiadendron giganteum HOM05D003560 ORTHO05D004500 5.4e-16 91.3 176 33.5
C03p39530 Brassica napus HOM05D003560 ORTHO05D021703 9.0e-11 73.9 119 42.0
BcaC01g01128 Brassica carinata HOM05D003560 ORTHO05D004500 2.6e-10 72.4 132 35.6
C03p39520 Brassica napus HOM05D003560 ORTHO05D021703 3.4e-10 72.0 119 40.3
VMungo1127G1083 Vigna mungo HOM05D003560 ORTHO05D021703 7.6e-10 70.9 117 37.6
C04p25460 Brassica napus HOM05D003560 ORTHO05D021703 6.4e-09 67.8 119 37.0
BolC4t24064H Brassica oleracea HOM05D003560 ORTHO05D021703 6.4e-09 67.8 119 37.0
BcaC01g00594 Brassica carinata HOM05D003560 ORTHO05D021703 8.4e-09 67.4 119 39.5
Actinidia24368 Actinidia chinensis HOM05D003560 ORTHO05D004500 1.1e-08 67.0 121 38.8
Nn2g14361 Nelumbo nucifera HOM05D003560 ORTHO05D004500 1.1e-08 67.0 52 67.3
Lsat_1_v5_gn_4_130961 Lactuca sativa HOM05D003560 ORTHO05D232868 6.0e-07 61.2 85 37.6
BcaC02g10746 Brassica carinata HOM05D003560 ORTHO05D027224 1.3e-06 60.1 286 24.8


User provided reference genes

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