Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 0.0e+00 2255.7 1205 100.0
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 3.6e-233 812.8 908 49.9
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 1.9e-210 737.3 1035 43.0
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 3.3e-202 709.9 1032 41.2
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 1.5e-199 701.0 1016 42.2
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 1.7e-198 697.6 1050 41.0
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 8.4e-198 695.3 1004 41.6
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 2.4e-197 693.7 1004 41.7
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 2.7e-196 690.3 1030 41.7
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 2.3e-195 687.2 1038 40.3
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 6.7e-195 685.6 1031 41.3
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 8.7e-195 685.3 1037 41.9
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 3.3e-194 683.3 1006 41.7
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 3.3e-194 683.3 971 41.5
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 4.8e-193 679.5 1033 40.9
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 1.1e-192 678.3 1053 40.6
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 1.1e-192 678.3 1031 41.3
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 2.4e-192 677.2 1048 41.3
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 4.0e-192 676.4 1045 40.7
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 6.9e-192 675.6 1006 41.1
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 2.6e-191 673.7 1023 40.2
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 5.8e-191 672.5 933 42.8
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 1.0e-190 671.8 993 41.2
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 6.5e-190 669.1 940 41.8
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 6.5e-190 669.1 1056 38.5
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 1.1e-189 668.3 979 41.9
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 5.5e-189 666.0 1055 40.9
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 7.1e-189 665.6 1019 40.7
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 9.3e-189 665.2 1038 40.2
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 9.3e-189 665.2 1052 39.4
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 2.1e-188 664.1 1023 41.0
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 1.0e-187 661.8 1040 39.7
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 1.3e-187 661.4 1031 40.3
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 1.8e-187 661.0 1039 40.2
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 3.3e-186 656.8 1010 40.7
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 3.3e-186 656.8 1047 40.5
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 5.7e-186 656.0 1054 39.8
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 7.4e-186 655.6 1015 40.9
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 9.6e-186 655.2 1032 39.4
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 1.3e-185 654.8 1023 39.9
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 1.6e-185 654.4 1040 39.7
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.8e-185 653.7 1026 41.0
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 1.4e-184 651.4 1026 39.3
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 1.8e-184 651.0 1026 38.8
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 2.4e-184 650.6 1034 39.3
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 6.9e-184 649.0 920 42.2
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 1.2e-183 648.3 1042 39.8
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 2.0e-183 647.5 1025 40.7
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 2.0e-183 647.5 1043 40.0
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 2.6e-183 647.1 1026 40.4
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 3.4e-183 646.7 1046 39.0
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 3.4e-183 646.7 1084 39.4
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 5.9e-183 646.0 965 42.1
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 7.6e-183 645.6 1033 39.2
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 1.0e-182 645.2 1036 39.5
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 1.7e-182 644.4 1060 39.7
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 2.2e-182 644.0 1049 39.5
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 3.8e-182 643.3 1048 39.5
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 2.5e-181 640.6 1043 39.2
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 2.1e-180 637.5 1031 39.0
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 2.7e-180 637.1 1039 38.9
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 3.6e-180 636.7 1048 38.7
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 7.9e-180 635.6 1009 39.1
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 1.0e-179 635.2 1149 38.1
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 2.3e-179 634.0 982 40.1
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 2.3e-179 634.0 1012 39.6
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 3.0e-179 633.6 1024 39.2
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 3.9e-179 633.3 1035 39.5
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 3.9e-179 633.3 1037 39.5
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 1.9e-178 630.9 1056 38.5
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 1.9e-178 630.9 930 41.2
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 2.5e-178 630.6 969 40.8
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 2.5e-178 630.6 967 40.2
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 3.3e-178 630.2 1044 38.7
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 4.3e-178 629.8 1041 38.7
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 4.3e-178 629.8 1041 38.7
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 5.7e-178 629.4 1053 39.1
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 1.8e-176 624.4 1052 37.9
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 5.3e-176 622.9 841 43.0
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 6.9e-176 622.5 1018 38.8
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 9.0e-176 622.1 1045 38.1
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 2.6e-175 620.5 1048 38.5
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 1.9e-173 614.4 1051 37.9
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 1.9e-173 614.4 1057 39.1
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 4.2e-173 613.2 1051 37.9
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 2.1e-172 610.9 1008 39.2
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 8.8e-171 605.5 1076 37.3
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 5.7e-170 602.8 1048 38.4
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 7.7e-167 592.4 1168 35.8
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 6.7e-163 579.3 1024 37.4
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 6.3e-161 572.8 930 38.1
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 2.2e-158 564.3 789 41.3
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 1.5e-154 551.6 753 41.8
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 1.8e-152 544.7 764 42.5
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 1.6e-151 541.6 764 42.7
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.3e-150 538.5 747 42.8
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 2.2e-150 537.7 748 42.0
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.0e-142 512.3 710 44.5
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 5.0e-142 510.0 927 35.7
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 5.2e-131 473.4 603 44.8
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 8.9e-131 472.6 546 46.9
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 8.0e-124 449.5 1033 31.8
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 2.4e-120 438.0 1021 33.3
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 9.5e-117 426.0 649 41.3
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 1.8e-107 395.2 680 38.8
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 6.0e-103 380.2 581 40.8
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-90 337.8 1615 23.5
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 9.6e-85 319.7 319 52.4
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 1.3e-81 309.3 877 30.1
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 2.0e-74 285.4 927 30.5
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 4.2e-72 277.7 674 33.7
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.3e-70 271.9 445 40.0
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.4e-54 219.5 249 48.6
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 9.7e-45 186.8 237 44.7
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 8.2e-44 183.7 226 42.5
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 2.6e-42 178.7 207 44.4
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 2.1e-39 169.1 373 33.0
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 2.3e-38 165.6 812 27.0
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 9.7e-37 160.2 206 43.7
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 2.7e-34 152.1 233 40.3
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 1.5e-32 146.4 360 33.3
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 1.3e-25 123.2 217 40.1
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 5.7e-21 107.8 135 47.4
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 7.5e-21 107.5 105 50.5
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 1.7e-20 106.3 279 34.4
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 2.4e-19 102.4 257 33.1
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 1.1e-16 93.6 776 20.7
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 7.0e-11 74.3 76 44.7
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 2.0e-10 72.8 86 45.3
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 4.3e-08 65.1 55 56.4


User provided reference genes

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