Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_14520 Physcomitrium patens HOM05D016224 ORTHO05D023076 0.0e+00 1165.2 603 100.0
Pp3c19_13560 Physcomitrium patens HOM05D016224 ORTHO05D023076 3.5e-152 542.7 605 52.2
Pp3c18_6640 Physcomitrium patens HOM05D016224 ORTHO05D023076 1.3e-77 295.0 573 39.1
AagrBONN_evm.TU.Sc2ySwM_228.2886 Anthoceros agrestis HOM05D000085 ORTHO05D001756 6.2e-24 116.7 148 39.9
Pp3c12_23140 Physcomitrium patens HOM05D016224 ORTHO05D023076 8.1e-24 116.3 257 31.1
Pp3c8_3850 Physcomitrium patens HOM05D016224 ORTHO05D023076 2.3e-23 114.8 277 31.8
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.3e-18 98.2 150 31.3
AagrBONN_evm.TU.Sc2ySwM_117.1414 Anthoceros agrestis HOM05D016224 ORTHO05D010508 1.1e-17 95.9 147 38.1
Pp3c4_3630 Physcomitrium patens HOM05D016224 ORTHO05D023076 4.3e-17 94.0 177 34.5
Pp3c8_1070 Physcomitrium patens HOM05D000085 ORTHO05D001756 2.8e-16 91.3 203 29.6
Pp3c24_19020 Physcomitrium patens HOM05D026724 ORTHO05D026055 6.2e-16 90.1 170 33.5
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.4e-15 88.2 176 30.7
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.4e-15 88.2 176 30.7
Thecc.10G132100 Theobroma cacao HOM05D000085 ORTHO05D006184 5.2e-15 87.0 191 24.1
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 6.8e-15 86.7 147 32.7
PSO675G2913 Papaver somniferum HOM05D000085 ORTHO05D006184 8.9e-15 86.3 159 24.5
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 8.9e-15 86.3 147 30.6
DCAR_029721 Daucus carota HOM05D000085 ORTHO05D006184 3.4e-14 84.3 163 24.5
Pp3c17_19290 Physcomitrium patens HOM05D000085 ORTHO05D001756 3.4e-14 84.3 176 28.4
TWI79G0144 Tripterygium wilfordii HOM05D000085 ORTHO05D006184 5.8e-14 83.6 162 25.9
Gohir.D10G199700 Gossypium hirsutum HOM05D000085 ORTHO05D006184 7.6e-14 83.2 147 26.5
Manes.04G153800 Manihot esculenta HOM05D000085 ORTHO05D006184 7.6e-14 83.2 151 25.2
AagrBONN_evm.TU.Sc2ySwM_117.1415 Anthoceros agrestis HOM05D016224 ORTHO05D010508 1.3e-13 82.4 167 32.3
Peaxi162Scf00066g01519 Petunia axillaris HOM05D000085 ORTHO05D009791 1.7e-13 82.0 195 30.8
Gorai.011G223900 Gossypium raimondii HOM05D000085 ORTHO05D006184 2.2e-13 81.6 147 26.5
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 3.8e-13 80.9 164 30.5
Aqoxy6G00345 Aquilegia oxysepala HOM05D000085 ORTHO05D009791 8.4e-13 79.7 156 34.0
Aqoxy6G00346 Aquilegia oxysepala HOM05D000485 ORTHO05D009791 8.4e-13 79.7 145 33.1
CAN.G46.6 Capsicum annuum HOM05D000085 ORTHO05D009791 8.4e-13 79.7 170 31.2
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.4e-12 79.0 261 21.5
MELO3C008431.2 Cucumis melo HOM05D000085 ORTHO05D009791 1.9e-12 78.6 139 31.7
Potri.003G189850 Populus trichocarpa HOM05D000085 ORTHO05D006184 1.9e-12 78.6 181 23.2
PGR119G1958 Punica granatum HOM05D000085 ORTHO05D006184 1.9e-12 78.6 149 26.2
Actinidia01698 Actinidia chinensis HOM05D000085 ORTHO05D006184 2.4e-12 78.2 160 25.0
Aqoxy2G00032 Aquilegia oxysepala HOM05D000085 ORTHO05D006184 2.4e-12 78.2 181 24.3
Solyc04g063370.3 Solanum lycopersicum HOM05D000085 ORTHO05D009791 3.2e-12 77.8 125 35.2
Sopen04g026290 Solanum pennellii HOM05D000085 ORTHO05D009791 3.2e-12 77.8 125 35.2
Mapoly0095s0067 Marchantia polymorpha HOM05D008363 ORTHO05D010508 4.2e-12 77.4 160 32.5
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 4.2e-12 77.4 180 30.0
Potri.001G224800 Populus trichocarpa HOM05D000085 ORTHO05D006184 4.2e-12 77.4 147 28.6
PSO541G3755 Papaver somniferum HOM05D000085 ORTHO05D006184 7.1e-12 76.6 170 22.4
CsaV3_6G031170 Cucumis sativus L. HOM05D000085 ORTHO05D009791 9.3e-12 76.3 179 29.6
PGR044G1330 Punica granatum HOM05D000085 ORTHO05D006184 2.1e-11 75.1 198 20.7
FAN06G0172 Fragaria x ananassa HOM05D000085 ORTHO05D006184 2.7e-11 74.7 162 25.3
FAN06G0213 Fragaria x ananassa HOM05D000085 ORTHO05D006184 2.7e-11 74.7 162 25.3
ClCG08G006270 Citrullus lanatus HOM05D000085 ORTHO05D009791 4.6e-11 73.9 139 30.2
Lj6g0021794 Lotus japonicus HOM05D000085 ORTHO05D015977 4.6e-11 73.9 163 22.7
MBI19_g24735_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D006184 4.6e-11 73.9 160 24.4
Sed0010025 Sechium edule HOM05D000085 ORTHO05D009791 4.6e-11 73.9 139 29.5
CSS0024542 Camellia sinensis var. sinensis HOM05D000085 ORTHO05D009791 7.8e-11 73.2 125 33.6
Duzib168G1166 Durio zibethinus HOM05D000085 ORTHO05D006184 1.0e-10 72.8 190 25.8
Pp3c3_13770 Physcomitrium patens HOM05D026724 ORTHO05D020966 1.0e-10 72.8 147 28.6
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.0e-10 72.8 165 27.9
FAN03G0175 Fragaria x ananassa HOM05D000085 ORTHO05D006184 1.3e-10 72.4 159 25.8
TAR628G0721 Trochodendron aralioides HOM05D000085 ORTHO05D009791 1.3e-10 72.4 180 27.2
Lj9A652T57 Lonicera japonica HOM05D000085 ORTHO05D006184 1.7e-10 72.0 161 23.0
FAN01G1090 Fragaria x ananassa HOM05D000085 ORTHO05D006184 3.9e-10 70.9 159 25.2
Ciclev10003429m.g Citrus clementina HOM05D000085 ORTHO05D009791 5.1e-10 70.5 141 32.6
VMungo0647G1792 Vigna mungo HOM05D000085 ORTHO05D006184 5.1e-10 70.5 167 22.8
Duzib128G0691 Durio zibethinus HOM05D000085 ORTHO05D006184 6.6e-10 70.1 244 21.3
MBI03_g20848_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D009791 8.7e-10 69.7 161 28.6
TPR.G16401 Trifolium pratense HOM05D000085 ORTHO05D006184 8.7e-10 69.7 149 26.8
Migut.C01091 Erythranthe guttata HOM05D000085 ORTHO05D009791 1.1e-09 69.3 160 30.6
Manes.01G176300 Manihot esculenta HOM05D000085 ORTHO05D006184 1.1e-09 69.3 171 22.8
Medtr4g128180 Medicago truncatula HOM05D000085 ORTHO05D006184 1.1e-09 69.3 157 24.8
Cpa.g.sc26.71 Carica papaya HOM05D000085 ORTHO05D009791 1.5e-09 68.9 188 27.1
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.5e-09 68.9 160 21.9
Gorai.001G043200 Gossypium raimondii HOM05D000085 ORTHO05D006184 1.9e-09 68.6 157 26.8
Manes.02G172500 Manihot esculenta HOM05D000085 ORTHO05D009791 1.9e-09 68.6 188 27.7
Actinidia24490 Actinidia chinensis HOM05D000085 ORTHO05D006184 2.5e-09 68.2 161 23.0
Lj4A685T34 Lonicera japonica HOM05D000085 ORTHO05D009791 2.5e-09 68.2 163 29.4
LjContig00564g0025361 Lotus japonicus HOM05D000085 ORTHO05D006184 2.5e-09 68.2 158 22.8
Pp3c26_7470 Physcomitrium patens HOM05D026724 ORTHO05D020966 2.5e-09 68.2 164 25.6
Gohir.A07G036650 Gossypium hirsutum HOM05D000085 ORTHO05D006184 3.3e-09 67.8 157 26.8
MBI19_g24736_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D006184 3.3e-09 67.8 159 22.6
Nitab4.5_0000174g0070 Nicotiana tabacum HOM05D000085 ORTHO05D009791 4.3e-09 67.4 176 28.4
Prupe.8G012500 Prunus persica HOM05D000085 ORTHO05D009791 4.3e-09 67.4 210 29.0
Thecc.09G256900 Theobroma cacao HOM05D000085 ORTHO05D006184 4.3e-09 67.4 160 25.0
Actinidia03435 Actinidia chinensis HOM05D000085 ORTHO05D009791 5.6e-09 67.0 125 30.4
Lj2A829G58 Lonicera japonica HOM05D000085 ORTHO05D006184 5.6e-09 67.0 178 23.6
Pp3c13_19300 Physcomitrium patens HOM05D026724 ORTHO05D020966 5.6e-09 67.0 147 25.2
RcHm_v2.0_Chr6g0277981 Rosa chinensis HOM05D000085 ORTHO05D009791 5.6e-09 67.0 148 29.7
FvH4_2g15260 Fragaria vesca HOM05D000085 ORTHO05D009791 7.3e-09 66.6 131 31.3
FAN15G3404 Fragaria x ananassa HOM05D000085 ORTHO05D009791 7.3e-09 66.6 131 31.3
Psat0s2703g0120 Pisum sativum HOM05D000085 ORTHO05D006184 7.3e-09 66.6 169 27.2
Atru.chr13.1646 Acer truncatum HOM05D000085 ORTHO05D009791 9.6e-09 66.2 146 28.8
FAN27G0973 Fragaria x ananassa HOM05D000085 ORTHO05D009791 9.6e-09 66.2 131 31.3
Phvul.008G204900 Phaseolus vulgaris HOM05D000085 ORTHO05D006184 9.6e-09 66.2 165 21.2
PGR031G0712 Punica granatum HOM05D000085 ORTHO05D006184 9.6e-09 66.2 171 24.0
Sed0014409 Sechium edule HOM05D000085 ORTHO05D006184 9.6e-09 66.2 150 24.7
FAN04G2847 Fragaria x ananassa HOM05D008363 ORTHO05D010508 1.3e-08 65.9 154 27.9
FAN08G0799 Fragaria x ananassa HOM05D008363 ORTHO05D010508 1.3e-08 65.9 154 27.9
FAN13G1991 Fragaria x ananassa HOM05D008363 ORTHO05D010508 1.3e-08 65.9 154 27.9
FAN18G1001 Fragaria x ananassa HOM05D008363 ORTHO05D010508 1.3e-08 65.9 154 27.9
TWI60G0672 Tripterygium wilfordii HOM05D000085 ORTHO05D009791 1.3e-08 65.9 131 27.5
MD10G1008700 Malus domestica HOM05D000085 ORTHO05D009791 1.6e-08 65.5 164 29.9
Prupe.8G012300 Prunus persica HOM05D008363 ORTHO05D009791 1.6e-08 65.5 167 29.9
Actinidia29501 Actinidia chinensis HOM05D000085 ORTHO05D009791 2.1e-08 65.1 139 29.5
FvH4_5g22141 Fragaria vesca HOM05D008363 ORTHO05D010508 2.1e-08 65.1 154 27.9
SalBow6G4001 Salvia bowleyana HOM05D000085 ORTHO05D009791 3.6e-08 64.3 125 30.4
Zm00001eb145720 Zea mays HOM05D000085 ORTHO05D009791 3.6e-08 64.3 196 26.5
TAR636G2722 Trochodendron aralioides HOM05D008363 ORTHO05D010508 6.2e-08 63.5 195 28.7
Haze_02957 Corylus avellana HOM05D000085 ORTHO05D006184 8.1e-08 63.2 147 23.1
Lsat_1_v5_gn_2_96380 Lactuca sativa HOM05D000085 ORTHO05D006184 8.1e-08 63.2 147 25.2
MELO3C011783.2 Cucumis melo HOM05D000085 ORTHO05D006184 1.1e-07 62.8 197 22.8
DCAR_031504 Daucus carota HOM05D000085 ORTHO05D009791 1.4e-07 62.4 125 28.0
Duzib093G0943 Durio zibethinus HOM05D000085 ORTHO05D009791 1.4e-07 62.4 147 27.2
Medtr0205s0040 Medicago truncatula HOM05D000085 ORTHO05D015977 1.4e-07 62.4 155 21.3
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.4e-07 62.4 271 22.5
Cfa018397 Carpinus fangiana HOM05D000085 ORTHO05D009791 1.8e-07 62.0 185 24.9
CiPaw.13G018100 Carya illinoinensis HOM05D000085 ORTHO05D006184 1.8e-07 62.0 147 25.2
CsaV3_3G001670 Cucumis sativus L. HOM05D008363 ORTHO05D010508 1.8e-07 62.0 161 26.7
Pp3c11_18470 Physcomitrium patens HOM05D000085 ORTHO05D001756 1.8e-07 62.0 161 26.7
Prupe.8G012200 Prunus persica HOM05D000085 ORTHO05D009791 1.8e-07 62.0 147 27.2
RcHm_v2.0_Chr7g0209801 Rosa chinensis HOM05D008363 ORTHO05D010508 1.8e-07 62.0 158 29.7
Thecc.08G138000 Theobroma cacao HOM05D000085 ORTHO05D009791 1.8e-07 62.0 117 29.1
PGR031G1477 Punica granatum HOM05D008363 ORTHO05D010508 2.4e-07 61.6 209 24.9
Potri.001G035900 Populus trichocarpa HOM05D000085 ORTHO05D006184 3.1e-07 61.2 175 21.1
Prupe.5G035100 Prunus persica HOM05D008363 ORTHO05D010508 3.1e-07 61.2 149 27.5
arahy.Tifrunner.gnm1.ann1.F9JT0R Arachis hypogaea HOM05D000085 ORTHO05D006184 4.0e-07 60.8 152 21.7
CANSAT21G2494 Cannabis sativa HOM05D000085 ORTHO05D009791 4.0e-07 60.8 179 27.9
Manes.15G182300 Manihot esculenta HOM05D008363 ORTHO05D010508 4.0e-07 60.8 183 25.7
MD05G1010000 Malus domestica HOM05D000085 ORTHO05D009791 5.3e-07 60.5 167 29.9
Manes.18G084900 Manihot esculenta HOM05D000085 ORTHO05D009791 5.3e-07 60.5 152 28.3
Aqoxy5G00023 Aquilegia oxysepala HOM05D008363 ORTHO05D010508 6.9e-07 60.1 149 28.2
CsaV3_5G029350 Cucumis sativus L. HOM05D000085 ORTHO05D006184 6.9e-07 60.1 198 25.3
Cpa.g.sc227.8 Carica papaya HOM05D008363 ORTHO05D010508 1.2e-06 59.3 222 25.2
AagrBONN_evm.TU.Sc2ySwM_344.1186 Anthoceros agrestis HOM05D008363 ORTHO05D010508 1.5e-06 58.9 153 32.0
GSVIVG01009979001 Vitis vinifera HOM05D000085 ORTHO05D009791 1.5e-06 58.9 172 28.5
CAN.G134.31 Capsicum annuum HOM05D000085 ORTHO05D006184 2.0e-06 58.5 153 22.9
COL.COLO4_07812 Corchorus olitorius HOM05D000085 ORTHO05D009791 2.0e-06 58.5 163 27.6
arahy.Tifrunner.gnm1.ann1.NCK985 Arachis hypogaea HOM05D000085 ORTHO05D009791 3.4e-06 57.8 163 23.9
PGR042G3791 Punica granatum HOM05D008363 ORTHO05D010508 3.4e-06 57.8 172 26.2
arahy.Tifrunner.gnm1.ann1.RDL00W Arachis hypogaea HOM05D000085 ORTHO05D006184 4.5e-06 57.4 152 20.4
Gorai.005G084900 Gossypium raimondii HOM05D000085 ORTHO05D009791 4.5e-06 57.4 152 25.7
Lj3g0006871 Lotus japonicus HOM05D000085 ORTHO05D006184 4.5e-06 57.4 170 19.4
TAR376G0490 Trochodendron aralioides HOM05D000085 ORTHO05D011292 4.5e-06 57.4 179 24.0
Gohir.D02G075666 Gossypium hirsutum HOM05D000085 ORTHO05D009791 5.8e-06 57.0 152 25.7
ECA240G1835 Erigeron canadensis HOM05D000085 ORTHO05D011292 7.6e-06 56.6 166 28.3
Migut.N03251 Erythranthe guttata HOM05D000085 ORTHO05D009791 7.6e-06 56.6 165 24.2
Lsat_1_v5_gn_9_119161 Lactuca sativa HOM05D000085 ORTHO05D011292 7.6e-06 56.6 215 23.3
Manes.05G195161 Manihot esculenta HOM05D008363 ORTHO05D010508 7.6e-06 56.6 155 28.4
Nitab4.5_0004168g0020 Nicotiana tabacum HOM05D000085 ORTHO05D006184 7.6e-06 56.6 173 22.0
Atru.chr3.2934 Acer truncatum HOM05D000003 ORTHO05D000006 9.9e-06 56.2 168 25.0
Gohir.A02G068901 Gossypium hirsutum HOM05D000085 ORTHO05D009791 9.9e-06 56.2 141 27.0
PGSC0003DMG400003294 Solanum tuberosum HOM05D000085 ORTHO05D006184 9.9e-06 56.2 153 21.6


User provided reference genes

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