Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 8.2e-126 453.8 232 100.0
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 3.0e-43 179.5 199 49.2
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 2.1e-33 146.7 203 44.3
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 3.1e-32 142.9 204 41.7
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 4.5e-31 139.0 204 39.7
SMO337G0092 Selaginella moellendorffii HOM05D006799 ORTHO05D008391 2.2e-22 110.2 184 36.4
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 5.5e-21 105.5 213 32.4
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 9.4e-21 104.8 190 37.4
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 4.6e-20 102.4 188 36.7
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 1.0e-19 101.3 191 34.6
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 1.8e-19 100.5 190 34.7
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.1e-18 97.8 188 33.5
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 1.5e-18 97.4 201 33.8
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 2.5e-18 96.7 201 34.8
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 2.5e-18 96.7 197 33.5
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 3.3e-18 96.3 195 32.8
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 3.3e-18 96.3 179 34.1
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 4.3e-18 95.9 189 33.3
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 7.4e-18 95.1 188 33.0
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 1.3e-17 94.4 182 31.9
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 3.7e-17 92.8 180 35.6
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 4.8e-17 92.4 190 33.2
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 6.3e-17 92.0 188 34.0
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 6.3e-17 92.0 190 31.6
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 1.1e-16 91.3 190 32.6
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 1.1e-16 91.3 199 32.7
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 1.4e-16 90.9 199 31.2
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 1.4e-16 90.9 190 33.2
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 1.4e-16 90.9 174 32.2
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 1.4e-16 90.9 179 33.5
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 1.8e-16 90.5 188 34.0
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 1.8e-16 90.5 191 33.5
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 1.8e-16 90.5 191 33.5
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 2.4e-16 90.1 186 33.9
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 2.4e-16 90.1 186 34.4
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 2.4e-16 90.1 186 31.2
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 2.4e-16 90.1 185 32.4
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 4.1e-16 89.4 190 32.6
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 5.3e-16 89.0 180 31.7
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 5.3e-16 89.0 189 31.7
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 9.1e-16 88.2 199 30.7
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 9.1e-16 88.2 190 31.6
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 1.2e-15 87.8 180 33.9
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 1.2e-15 87.8 211 30.3
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.2e-15 87.8 189 32.3
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.2e-15 87.8 191 33.0
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 1.5e-15 87.4 180 31.1
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 2.0e-15 87.0 197 31.0
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 2.6e-15 86.7 185 33.0
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 2.6e-15 86.7 189 33.9
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 2.6e-15 86.7 187 33.7
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 2.6e-15 86.7 185 30.3
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 2.6e-15 86.7 191 31.9
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 3.4e-15 86.3 176 33.0
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 5.9e-15 85.5 178 33.7
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 1.0e-14 84.7 173 32.4
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 1.3e-14 84.3 185 31.9
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 1.7e-14 84.0 175 34.3
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 1.7e-14 84.0 182 33.0
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 2.2e-14 83.6 197 29.9
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 2.2e-14 83.6 179 33.5
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 2.2e-14 83.6 190 32.6
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 2.9e-14 83.2 190 31.1
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 3.8e-14 82.8 184 33.7
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 6.5e-14 82.0 173 31.8
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 6.5e-14 82.0 173 33.5
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 6.5e-14 82.0 198 31.8
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 6.5e-14 82.0 185 31.4
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 1.4e-13 80.9 173 33.5
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 1.4e-13 80.9 173 31.8
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 1.4e-13 80.9 173 33.5
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 1.4e-13 80.9 173 33.5
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 1.4e-13 80.9 185 31.9
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 1.9e-13 80.5 179 31.8
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 1.9e-13 80.5 185 31.9
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 1.9e-13 80.5 165 33.3
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 2.5e-13 80.1 173 34.1
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 2.5e-13 80.1 204 29.9
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 2.5e-13 80.1 189 30.2
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 3.2e-13 79.7 173 32.4
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 3.2e-13 79.7 173 32.4
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 3.2e-13 79.7 171 33.9
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 4.2e-13 79.3 189 30.7
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 5.5e-13 79.0 189 30.7
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 5.5e-13 79.0 173 34.1
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 5.5e-13 79.0 198 30.8
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 7.2e-13 78.6 203 32.0
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 7.2e-13 78.6 189 30.7
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 7.2e-13 78.6 185 31.4
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 7.2e-13 78.6 205 29.8
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 7.2e-13 78.6 184 30.4
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 7.2e-13 78.6 180 28.9
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 9.4e-13 78.2 178 30.9
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 9.4e-13 78.2 199 31.2
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 9.4e-13 78.2 237 27.8
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 1.6e-12 77.4 203 32.0
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 1.6e-12 77.4 173 32.9
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 2.1e-12 77.0 173 32.9
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 2.7e-12 76.6 195 30.8
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 3.6e-12 76.3 174 31.6
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 3.6e-12 76.3 174 33.3
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 3.6e-12 76.3 204 28.9
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 6.1e-12 75.5 188 28.2
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 6.1e-12 75.5 235 28.1
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 7.9e-12 75.1 174 31.0
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 1.0e-11 74.7 186 28.0
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 1.8e-11 73.9 173 30.1
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 7.4e-10 68.6 202 30.2
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 1.7e-09 67.4 136 34.6
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 2.2e-09 67.0 141 31.9
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 8.2e-09 65.1 134 32.1
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 1.1e-08 64.7 161 28.6
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 1.4e-08 64.3 94 39.4
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 7.7e-07 58.5 89 38.2
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 2.2e-06 57.0 135 30.4


User provided reference genes

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