Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_6860 Physcomitrium patens HOM05D007528 ORTHO05D008503 1.0e-145 520.0 256 100.0
Mapoly0168s0009 Marchantia polymorpha HOM05D007528 ORTHO05D008503 1.5e-72 276.9 198 68.2
AagrBONN_evm.TU.Sc2ySwM_344.4238 Anthoceros agrestis HOM05D007528 ORTHO05D008503 8.9e-65 251.1 206 62.1
SEGI_20851 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 1.9e-54 216.9 194 55.7
Eucgr.A02169 Eucalyptus grandis HOM05D007528 ORTHO05D008503 5.4e-54 215.3 190 53.7
Nn7g37298 Nelumbo nucifera HOM05D007528 ORTHO05D008503 7.8e-53 211.5 213 50.7
MBI13_g02396_MAGBIO Magnolia biondii HOM05D007528 ORTHO05D008503 1.0e-52 211.1 183 55.2
Gohir.A01G197400 Gossypium hirsutum HOM05D007528 ORTHO05D008503 3.0e-52 209.5 251 44.6
MSTRG.19743 Avicennia marina HOM05D007528 ORTHO05D008503 3.9e-52 209.1 189 55.0
Gohir.D01G187600 Gossypium hirsutum HOM05D007528 ORTHO05D008503 3.9e-52 209.1 251 45.0
GSVIVG01025860001 Vitis vinifera HOM05D007528 ORTHO05D008503 3.9e-52 209.1 195 53.8
Gorai.002G231000 Gossypium raimondii HOM05D007528 ORTHO05D008503 5.1e-52 208.8 251 45.0
Dinv14550 Davidia involucrata HOM05D007528 ORTHO05D008503 6.6e-52 208.4 198 53.0
Cc06_g21080 Coffea canephora HOM05D007528 ORTHO05D008503 1.5e-51 207.2 190 52.6
Lj2A414T28 Lonicera japonica HOM05D007528 ORTHO05D008503 3.3e-51 206.1 197 50.8
SalBow6G5282 Salvia bowleyana HOM05D007528 ORTHO05D008503 3.3e-51 206.1 202 54.5
SalBow6G5858 Salvia bowleyana HOM05D007528 ORTHO05D008503 3.3e-51 206.1 202 54.5
ATR0307G122 Amborella trichopoda HOM05D007528 ORTHO05D008503 5.6e-51 205.3 209 50.2
Nitab4.5_0000382g0060 Nicotiana tabacum HOM05D007528 ORTHO05D008503 9.6e-51 204.5 194 51.5
QL11p009983 Quercus lobata HOM05D007528 ORTHO05D008503 1.2e-50 204.1 201 48.8
CSS0027135 Camellia sinensis var. sinensis HOM05D007528 ORTHO05D008503 2.1e-50 203.4 210 51.9
CDE04G0261 Ceratophyllum demersum HOM05D007528 ORTHO05D008503 2.1e-50 203.4 190 50.0
Duzib093G0275 Durio zibethinus HOM05D007528 ORTHO05D008503 2.8e-50 203.0 210 48.6
TAR623G0014 Trochodendron aralioides HOM05D007528 ORTHO05D008503 2.8e-50 203.0 199 52.3
PSO729G0248 Papaver somniferum HOM05D007528 ORTHO05D008503 3.6e-50 202.6 198 50.0
Sed0015046 Sechium edule HOM05D007528 ORTHO05D008503 3.6e-50 202.6 200 51.0
Migut.J01598 Erythranthe guttata HOM05D007528 ORTHO05D008503 4.7e-50 202.2 188 52.7
Lj1g0006388 Lotus japonicus HOM05D007528 ORTHO05D008503 4.7e-50 202.2 189 50.8
Lalb_Chr22g0358311 Lupinus albus HOM05D007528 ORTHO05D008503 4.7e-50 202.2 196 51.5
SMO266G0100 Selaginella moellendorffii HOM05D007528 ORTHO05D008503 4.7e-50 202.2 195 50.8
Lsat_1_v5_gn_8_83941 Lactuca sativa HOM05D007528 ORTHO05D008503 6.2e-50 201.8 182 51.6
CANSAT21G0864 Cannabis sativa HOM05D007528 ORTHO05D008503 8.1e-50 201.4 206 49.0
PGSC0003DMG400019757 Solanum tuberosum HOM05D007528 ORTHO05D008503 8.1e-50 201.4 191 51.8
Manes.09G073900 Manihot esculenta HOM05D007528 ORTHO05D008503 1.1e-49 201.1 256 44.1
Peaxi162Scf00183g00712 Petunia axillaris HOM05D007528 ORTHO05D008503 1.1e-49 201.1 194 50.5
ClCG10G016790 Citrullus lanatus HOM05D007528 ORTHO05D008503 1.8e-49 200.3 201 51.7
Ciclev10012580m.g Citrus clementina HOM05D007528 ORTHO05D008503 1.8e-49 200.3 222 46.8
HanXRQChr04g0125621 Helianthus annuus HOM05D007528 ORTHO05D008503 2.4e-49 199.9 201 49.3
PGR042G1749 Punica granatum HOM05D007528 ORTHO05D008503 2.4e-49 199.9 232 48.3
TWI63G0885 Tripterygium wilfordii HOM05D007528 ORTHO05D008503 2.4e-49 199.9 192 50.5
Thhalv10017145m.g Eutrema salsugineum HOM05D007528 ORTHO05D008503 4.0e-49 199.1 214 49.5
Thecc.05G128400 Theobroma cacao HOM05D007528 ORTHO05D008503 5.3e-49 198.7 214 48.1
Cpa.g.sc33.188 Carica papaya HOM05D007528 ORTHO05D008503 6.9e-49 198.4 178 53.9
CsaV3_3G039560 Cucumis sativus L. HOM05D007528 ORTHO05D008503 9.0e-49 198.0 199 49.2
MD12G1013500 Malus domestica HOM05D007528 ORTHO05D008503 1.5e-48 197.2 180 54.4
Phvul.001G109000 Phaseolus vulgaris HOM05D007528 ORTHO05D008503 1.5e-48 197.2 178 53.9
RcHm_v2.0_Chr3g0495771 Rosa chinensis HOM05D007528 ORTHO05D008503 1.5e-48 197.2 201 50.7
Solyc03g044630.2 Solanum lycopersicum HOM05D007528 ORTHO05D008503 1.5e-48 197.2 198 49.0
vmacro12911 Vaccinium macrocarpon HOM05D007528 ORTHO05D008503 1.5e-48 197.2 189 52.4
Oeu032951.1 Olea europaea HOM05D007528 ORTHO05D008503 2.0e-48 196.8 175 53.1
Potri.006G025200 Populus trichocarpa HOM05D007528 ORTHO05D008503 2.0e-48 196.8 256 41.4
DCAR_013508 Daucus carota HOM05D007528 ORTHO05D008503 2.6e-48 196.4 199 50.3
COL.COLO4_08087 Corchorus olitorius HOM05D007528 ORTHO05D008503 3.4e-48 196.1 196 49.5
AL4G39090 Arabidopsis lyrata HOM05D007528 ORTHO05D008503 5.8e-48 195.3 199 49.7
AT2G41120 Arabidopsis thaliana HOM05D007528 ORTHO05D008503 5.8e-48 195.3 193 50.3
Atru.chr8.936 Acer truncatum HOM05D007528 ORTHO05D008503 7.6e-48 194.9 207 47.8
Aqoxy2G00067 Aquilegia oxysepala HOM05D007528 ORTHO05D008503 9.9e-48 194.5 202 47.0
FAN28G2175 Fragaria x ananassa HOM05D007528 ORTHO05D008503 9.9e-48 194.5 200 50.5
Sp4g23430 Schrenkiella parvula HOM05D007528 ORTHO05D008503 9.9e-48 194.5 200 51.0
ECA236G1579 Erigeron canadensis HOM05D007528 ORTHO05D008503 1.7e-47 193.7 208 47.1
FvH4_1g29750 Fragaria vesca HOM05D007528 ORTHO05D008503 1.7e-47 193.7 200 50.5
arahy.Tifrunner.gnm1.ann1.ARK2IX Arachis hypogaea HOM05D007528 ORTHO05D008503 4.9e-47 192.2 194 50.0
arahy.Tifrunner.gnm1.ann1.ZMQ31P Arachis hypogaea HOM05D007528 ORTHO05D008503 4.9e-47 192.2 177 52.5
EL10Ac5g11614 Beta vulgaris HOM05D007528 ORTHO05D008503 4.9e-47 192.2 249 44.2
THA.LOC104803254 Tarenaya hassleriana HOM05D007528 ORTHO05D008503 4.9e-47 192.2 242 45.0
Ca_08340_v3 Cicer arietinum L. HOM05D007528 ORTHO05D008503 6.4e-47 191.8 200 47.5
FAN26G0883 Fragaria x ananassa HOM05D007528 ORTHO05D008503 6.4e-47 191.8 200 50.5
Carub.0004s2343 Capsella rubella HOM05D007528 ORTHO05D008503 1.9e-46 190.3 205 48.3
CBR_g37627 Chara braunii HOM05D007528 ORTHO05D008503 1.9e-46 190.3 181 51.9
Sabra06G0018500 Salix brachista HOM05D007528 ORTHO05D008503 1.9e-46 190.3 234 44.9
A04p31360 Brassica napus HOM05D007528 ORTHO05D008503 4.2e-46 189.1 177 53.7
Medtr7g088210 Medicago truncatula HOM05D007528 ORTHO05D008503 4.2e-46 189.1 213 46.0
C04p68770 Brassica napus HOM05D007528 ORTHO05D008503 7.1e-46 188.3 199 50.3
BraA04t18594Z Brassica rapa HOM05D007528 ORTHO05D008503 7.1e-46 188.3 202 49.0
Prupe.7G017900 Prunus persica HOM05D007528 ORTHO05D008503 9.3e-46 188.0 132 65.2
TPR.G23704 Trifolium pratense HOM05D007528 ORTHO05D008503 9.3e-46 188.0 178 51.1
BolC4t28382H Brassica oleracea HOM05D007528 ORTHO05D008503 1.2e-45 187.6 199 49.7
Aa31LG3G960 Aethionema arabicum HOM05D007528 ORTHO05D008503 1.6e-45 187.2 246 41.9
Haze_09241 Corylus avellana HOM05D007528 ORTHO05D006305 1.6e-45 187.2 206 45.6
Psat3g082960 Pisum sativum HOM05D007528 ORTHO05D008503 2.7e-45 186.4 196 48.5
Glyma.19G123400 Glycine max HOM05D007528 ORTHO05D008503 3.5e-45 186.0 179 51.4
Zm00001eb195960 Zea mays HOM05D007528 ORTHO05D008503 7.3e-43 178.3 188 49.5
BcaNung05626 Brassica carinata HOM05D007528 ORTHO05D008503 1.6e-42 177.2 239 43.1
Os11g0130200 Oryza sativa ssp. japonica HOM05D007528 ORTHO05D008503 1.7e-39 167.2 146 54.1
CARHR136210 Cardamine hirsuta HOM05D007528 ORTHO05D008503 3.2e-38 162.9 177 49.2
Rhsim10G0151800 Rhododendron simsii HOM05D007528 ORTHO05D008503 1.2e-37 161.0 115 61.7
CiPaw.13G169300 Carya illinoinensis HOM05D007528 ORTHO05D008503 1.8e-36 157.1 121 59.5
BcaC02g12850 Brassica carinata HOM05D007528 ORTHO05D008503 2.5e-27 126.7 148 44.6
FAN19G0638 Fragaria x ananassa HOM05D007528 ORTHO05D008503 1.7e-23 114.0 132 48.5
Sopen03g008910 Solanum pennellii HOM05D007528 ORTHO05D008503 7.1e-22 108.6 121 47.9
CAN.G1129.33 Capsicum annuum HOM05D007528 ORTHO05D008503 2.3e-20 103.6 121 46.3
SEGI_18622 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 3.7e-18 96.3 68 61.8
unitig_21.g20663 Utricularia gibba HOM05D007528 ORTHO05D008503 1.2e-16 91.3 146 34.2
VMungo1383G2363 Vigna mungo HOM05D007528 ORTHO05D008503 2.6e-16 90.1 55 67.3
Glyma.03G119000 Glycine max HOM05D007528 ORTHO05D008503 5.5e-14 82.4 72 51.4
Glyma.03G119100 Glycine max HOM05D007528 ORTHO05D008503 4.8e-10 69.3 123 35.0
Pp3s30_790 Physcomitrium patens HOM05D002374 ORTHO05D003594 1.4e-06 57.8 78 39.7


User provided reference genes

Program Settings