Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.2e-128 462.6 290 100.0
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 1.3e-24 117.9 103 52.4
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 1.2e-20 104.8 290 33.1
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 6.4e-19 99.0 290 32.4
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 5.4e-18 95.9 369 28.7
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.0e-16 91.7 300 30.0
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 3.0e-16 90.1 188 32.4
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 8.7e-16 88.6 156 34.0
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 1.5e-15 87.8 280 33.9
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 1.9e-15 87.4 191 33.0
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.9e-15 87.4 201 32.3
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.5e-15 87.0 155 33.5
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 4.3e-15 86.3 156 33.3
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.3e-15 86.3 156 33.3
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 7.3e-15 85.5 279 30.8
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 7.3e-15 85.5 169 36.1
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.3e-14 84.7 156 33.3
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 2.1e-14 84.0 288 28.5
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 3.6e-14 83.2 173 36.4
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 3.6e-14 83.2 107 43.0
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 3.6e-14 83.2 181 30.9
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 4.8e-14 82.8 156 34.6
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.8e-14 82.8 156 34.6
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 6.2e-14 82.4 175 36.0
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 8.1e-14 82.0 175 33.7
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 1.4e-13 81.3 184 33.7
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 1.4e-13 81.3 107 42.1
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 2.4e-13 80.5 76 48.7
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.4e-13 80.5 67 56.7
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 3.1e-13 80.1 167 33.5
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 3.1e-13 80.1 174 33.3
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 4.0e-13 79.7 163 35.6
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 4.0e-13 79.7 191 31.4
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 4.0e-13 79.7 175 34.9
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 4.0e-13 79.7 174 32.2
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 4.0e-13 79.7 273 28.2
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 5.3e-13 79.3 174 33.9
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 5.3e-13 79.3 198 30.3
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 6.9e-13 79.0 190 32.1
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 6.9e-13 79.0 172 34.3
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 6.9e-13 79.0 175 34.9
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 6.9e-13 79.0 189 31.7
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 6.9e-13 79.0 159 34.6
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 9.0e-13 78.6 185 32.4
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 9.0e-13 78.6 186 31.2
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 9.0e-13 78.6 158 35.4
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 9.0e-13 78.6 78 52.6
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 9.0e-13 78.6 288 27.8
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.2e-12 78.2 107 41.1
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 1.2e-12 78.2 107 39.3
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.5e-12 77.8 116 39.7
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 1.5e-12 77.8 131 35.1
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 2.0e-12 77.4 173 34.1
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 2.0e-12 77.4 189 33.3
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 2.0e-12 77.4 88 46.6
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 2.0e-12 77.4 166 33.1
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 2.0e-12 77.4 172 32.6
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 2.0e-12 77.4 188 33.5
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 2.6e-12 77.0 165 30.9
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 2.6e-12 77.0 174 35.1
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 2.6e-12 77.0 168 32.7
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 3.4e-12 76.6 198 31.8
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 3.4e-12 76.6 166 34.9
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 3.4e-12 76.6 169 34.9
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 3.4e-12 76.6 292 26.7
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 3.4e-12 76.6 266 28.2
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 3.4e-12 76.6 174 31.0
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 4.5e-12 76.3 169 33.1
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 4.5e-12 76.3 269 27.5
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 4.5e-12 76.3 154 31.2
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 4.5e-12 76.3 182 34.1
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 5.8e-12 75.9 286 27.6
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 5.8e-12 75.9 292 27.4
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 5.8e-12 75.9 176 35.2
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 5.8e-12 75.9 107 38.3
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 7.6e-12 75.5 176 35.2
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 9.9e-12 75.1 185 29.7
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 9.9e-12 75.1 180 33.3
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 9.9e-12 75.1 104 41.3
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 9.9e-12 75.1 167 32.3
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.3e-11 74.7 283 28.6
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.3e-11 74.7 245 27.8
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 1.7e-11 74.3 165 32.1
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 1.7e-11 74.3 274 27.0
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 1.7e-11 74.3 170 31.8
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 2.2e-11 73.9 187 33.2
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.2e-11 73.9 296 27.4
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 2.2e-11 73.9 174 29.9
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.2e-11 73.9 182 34.1
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 2.2e-11 73.9 176 34.7
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 2.9e-11 73.6 181 31.5
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 2.9e-11 73.6 166 32.5
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 2.9e-11 73.6 243 28.0
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.9e-11 73.6 284 26.8
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 3.8e-11 73.2 175 31.4
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 3.8e-11 73.2 275 28.0
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 3.8e-11 73.2 194 30.9
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 4.9e-11 72.8 69 47.8
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 4.9e-11 72.8 295 28.5
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 6.4e-11 72.4 277 27.1
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 6.4e-11 72.4 229 31.0
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 8.4e-11 72.0 297 27.3
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 8.4e-11 72.0 275 28.7
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 8.4e-11 72.0 281 27.0
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 8.4e-11 72.0 177 32.2
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 1.1e-10 71.6 182 32.4
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 1.1e-10 71.6 182 32.4
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 1.1e-10 71.6 154 30.5
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 1.1e-10 71.6 168 29.8
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.1e-10 71.6 279 28.3
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.4e-10 71.2 274 28.5
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.2e-10 70.1 182 33.5
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 9.3e-10 68.6 79 46.8
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 9.3e-10 68.6 276 25.7
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 9.3e-10 68.6 104 40.4
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.6e-09 67.8 282 25.2
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 2.1e-09 67.4 187 30.5
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 2.7e-09 67.0 183 30.6
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 3.5e-09 66.6 85 43.5
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 7.9e-09 65.5 68 48.5
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.8e-08 64.3 51 54.9
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 2.3e-08 63.9 182 30.8
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 3.0e-08 63.5 184 30.4
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 3.0e-08 63.5 161 29.8
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.9e-08 63.2 72 47.2
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 3.9e-08 63.2 279 26.5
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 5.1e-08 62.8 187 31.0
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 8.7e-08 62.0 294 26.2
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 1.1e-07 61.6 198 29.8
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.1e-07 61.6 55 54.5
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 1.5e-07 61.2 66 43.9
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.5e-07 61.2 184 29.9
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.5e-07 61.2 170 28.8
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 1.9e-07 60.8 55 52.7
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.5e-07 60.5 51 51.0
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.3e-07 60.1 86 40.7
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 3.3e-07 60.1 58 50.0
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 7.4e-07 58.9 53 50.9
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 9.6e-07 58.5 51 49.0


User provided reference genes

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