Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_5730 Physcomitrium patens HOM05D007019 ORTHO05D008398 3.3e-284 981.1 511 100.0
Zm00001eb257650 Zea mays HOM05D007019 ORTHO05D008398 8.4e-115 418.3 526 47.7
Manes.16G132200 Manihot esculenta HOM05D007019 ORTHO05D008398 6.0e-113 412.1 517 47.0
CANSAT25G0065 Cannabis sativa HOM05D007019 ORTHO05D008398 8.7e-112 408.3 521 47.6
Lj6g0025581 Lotus japonicus HOM05D007019 ORTHO05D008398 1.1e-111 407.9 518 46.7
Mapoly0067s0020 Marchantia polymorpha HOM05D007019 ORTHO05D008398 1.5e-111 407.5 514 48.2
MBI14_g16432_MAGBIO Magnolia biondii HOM05D007019 ORTHO05D008398 1.9e-111 407.1 524 46.4
DCAR_003030 Daucus carota HOM05D007019 ORTHO05D008398 9.6e-111 404.8 519 46.6
arahy.Tifrunner.gnm1.ann1.SS16UG Arachis hypogaea HOM05D007019 ORTHO05D008398 8.2e-110 401.7 520 47.9
SEGI_04420 Sequoiadendron giganteum HOM05D007019 ORTHO05D008398 1.1e-109 401.4 517 47.8
arahy.Tifrunner.gnm1.ann1.MG10WM Arachis hypogaea HOM05D007019 ORTHO05D008398 1.4e-109 401.0 520 48.1
Lj7A737G40 Lonicera japonica HOM05D007019 ORTHO05D008398 9.0e-109 398.3 524 46.6
FvH4_2g41350 Fragaria vesca HOM05D007019 ORTHO05D008398 7.6e-108 395.2 521 46.3
CDE04G0815 Ceratophyllum demersum HOM05D007019 ORTHO05D008398 1.0e-107 394.8 531 45.0
Potri.018G016200 Populus trichocarpa HOM05D007019 ORTHO05D008398 1.4e-106 391.0 522 45.8
Hma1.2p1_0737F.1_g210790 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 2.1e-105 387.1 513 44.6
Eucgr.C04032 Eucalyptus grandis HOM05D007019 ORTHO05D008398 6.0e-105 385.6 518 45.4
Atru.chr7.2574 Acer truncatum HOM05D007019 ORTHO05D008398 1.3e-104 384.4 526 45.4
Glyma.08G321000 Glycine max HOM05D007019 ORTHO05D008398 1.3e-104 384.4 516 45.3
Glyma.18G091000 Glycine max HOM05D007019 ORTHO05D008398 1.3e-104 384.4 526 45.8
Cc00_g05220 Coffea canephora HOM05D007019 ORTHO05D008398 1.8e-104 384.0 520 46.5
ATR0580G102 Amborella trichopoda HOM05D007019 ORTHO05D008398 2.3e-104 383.6 524 43.9
PSO731G0070 Papaver somniferum HOM05D007019 ORTHO05D008398 5.1e-104 382.5 519 44.3
Prupe.1G396900 Prunus persica HOM05D007019 ORTHO05D008398 8.7e-104 381.7 519 44.5
Psat5g174160 Pisum sativum HOM05D007019 ORTHO05D008398 1.5e-103 380.9 521 46.1
CiPaw.07G232900 Carya illinoinensis HOM05D007019 ORTHO05D008398 2.5e-103 380.2 516 45.0
HanXRQChr03g0084841 Helianthus annuus HOM05D007019 ORTHO05D008398 3.3e-103 379.8 535 43.7
PSO210G0129 Papaver somniferum HOM05D007019 ORTHO05D008398 7.4e-103 378.6 526 43.7
PGR044G2245 Punica granatum HOM05D007019 ORTHO05D008398 7.4e-103 378.6 521 45.5
Nn6g33490 Nelumbo nucifera HOM05D007019 ORTHO05D008398 1.6e-102 377.5 525 44.6
FAN27G2994 Fragaria x ananassa HOM05D007019 ORTHO05D008398 2.2e-102 377.1 503 45.9
Actinidia14141 Actinidia chinensis HOM05D007019 ORTHO05D008398 2.8e-102 376.7 518 43.6
Sp4g03850 Schrenkiella parvula HOM05D007019 ORTHO05D008398 2.8e-102 376.7 531 44.1
Migut.E01445 Erythranthe guttata HOM05D007019 ORTHO05D008398 3.7e-102 376.3 520 43.1
Lsat_1_v5_gn_6_78060 Lactuca sativa HOM05D007019 ORTHO05D008398 3.7e-102 376.3 525 45.0
Carub.0004s0445 Capsella rubella HOM05D007019 ORTHO05D008398 1.4e-101 374.4 532 44.4
Lalb_Chr15g0081591 Lupinus albus HOM05D007019 ORTHO05D008398 2.4e-101 373.6 521 45.1
Rhsim02G0217600 Rhododendron simsii HOM05D007019 ORTHO05D008398 2.4e-101 373.6 513 44.8
CsaV3_2G032590 Cucumis sativus L. HOM05D007019 ORTHO05D008398 5.3e-101 372.5 520 44.4
Cfa013011 Carpinus fangiana HOM05D007019 ORTHO05D008398 6.9e-101 372.1 520 45.6
unitig_46.g18223 Utricularia gibba HOM05D007019 ORTHO05D008398 9.0e-101 371.7 519 43.7
SMO116G0382 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 1.2e-100 371.3 513 46.4
RcHm_v2.0_Chr6g0299181 Rosa chinensis HOM05D007019 ORTHO05D008398 2.0e-100 370.5 522 43.3
CARHR294580 Cardamine hirsuta HOM05D007019 ORTHO05D008398 3.4e-100 369.8 532 44.5
ClCG08G013800 Citrullus lanatus HOM05D007019 ORTHO05D008398 3.4e-100 369.8 519 44.3
EL10Ac2g02454 Beta vulgaris HOM05D007019 ORTHO05D008398 4.5e-100 369.4 559 42.9
TWI32G0429 Tripterygium wilfordii HOM05D007019 ORTHO05D008398 4.5e-100 369.4 518 44.2
Aqoxy7G03288 Aquilegia oxysepala HOM05D007019 ORTHO05D008398 7.6e-100 368.6 517 44.1
Medtr3g053700 Medicago truncatula HOM05D007019 ORTHO05D008398 7.6e-100 368.6 516 45.7
Oeu021907.1 Olea europaea HOM05D007019 ORTHO05D008398 7.6e-100 368.6 526 44.1
VMungo0540G1233 Vigna mungo HOM05D007019 ORTHO05D008398 2.2e-99 367.1 515 43.9
MELO3C011312.2 Cucumis melo HOM05D007019 ORTHO05D008398 2.9e-99 366.7 522 43.9
AUR62032443 Chenopodium quinoa HOM05D007019 ORTHO05D008398 1.1e-98 364.8 536 43.3
CSS0016918 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 9.3e-98 361.7 515 43.5
CSS0023374 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 9.3e-98 361.7 515 43.5
Phvul.006G047900 Phaseolus vulgaris HOM05D007019 ORTHO05D008398 1.6e-97 360.9 515 43.1
Solyc08g068820.3 Solanum lycopersicum HOM05D007019 ORTHO05D008398 1.6e-97 360.9 514 43.8
BraA09t41004Z Brassica rapa HOM05D007019 ORTHO05D008398 2.1e-97 360.5 542 42.1
SGA_v2.0_scaffold169G38600 Striga asiatica HOM05D007019 ORTHO05D008398 3.6e-97 359.8 530 40.9
Aa31LG7G11570 Aethionema arabicum HOM05D007019 ORTHO05D008398 1.8e-96 357.5 532 42.5
HPP92_010745 Vanilla planifolia HOM05D007019 ORTHO05D008398 1.8e-96 357.5 529 43.1
THA.LOC104819948 Tarenaya hassleriana HOM05D007019 ORTHO05D008398 2.3e-96 357.1 538 42.2
Sed0002524 Sechium edule HOM05D007019 ORTHO05D008398 3.9e-96 356.3 517 42.4
Ciclev10008089m.g Citrus clementina HOM05D007019 ORTHO05D008398 5.1e-96 355.9 519 44.1
Hund25606 Selenicereus undatus HOM05D007019 ORTHO05D008398 5.1e-96 355.9 534 43.4
A09p56030 Brassica napus HOM05D007019 ORTHO05D008398 8.7e-96 355.1 537 41.9
AT2G24830 Arabidopsis thaliana HOM05D007019 ORTHO05D008398 3.3e-95 353.2 526 42.2
QL02p018053 Quercus lobata HOM05D007019 ORTHO05D008398 3.3e-95 353.2 518 43.1
PGSC0003DMG400014784 Solanum tuberosum HOM05D007019 ORTHO05D008398 7.4e-95 352.1 514 43.2
A09p56090 Brassica napus HOM05D007019 ORTHO05D008398 1.7e-94 350.9 539 41.2
Cpa.g.sc148.46 Carica papaya HOM05D007019 ORTHO05D008398 1.7e-94 350.9 521 42.2
Thecc.09G013400 Theobroma cacao HOM05D007019 ORTHO05D008398 2.8e-94 350.1 518 42.7
Ca_26389_v3 Cicer arietinum L. HOM05D007019 ORTHO05D008398 3.7e-94 349.7 520 42.9
Duzib168G1437 Durio zibethinus HOM05D007019 ORTHO05D008398 6.3e-94 349.0 516 44.0
CAN.G273.24 Capsicum annuum HOM05D007019 ORTHO05D008398 8.2e-94 348.6 519 42.0
TPR.G32253 Trifolium pratense HOM05D007019 ORTHO05D008398 8.2e-94 348.6 520 43.5
AUR62024776 Chenopodium quinoa HOM05D007019 ORTHO05D008398 1.4e-93 347.8 549 42.1
Gorai.009G064200 Gossypium raimondii HOM05D007019 ORTHO05D008398 1.8e-93 347.4 518 43.1
MSTRG.1627 Avicennia marina HOM05D007019 ORTHO05D008398 2.4e-93 347.1 522 42.5
ECA240G4302 Erigeron canadensis HOM05D007019 ORTHO05D008398 5.3e-93 345.9 536 41.2
Sabra18G0019700 Salix brachista HOM05D007019 ORTHO05D008398 2.0e-92 344.0 545 41.5
Gohir.A05G061000 Gossypium hirsutum HOM05D007019 ORTHO05D008398 2.2e-91 340.5 519 41.6
Thhalv10000137m.g Eutrema salsugineum HOM05D007019 ORTHO05D008398 2.9e-91 340.1 527 41.4
FAN15G0718 Fragaria x ananassa HOM05D007019 ORTHO05D008398 3.2e-90 336.7 537 41.9
C08p39020 Brassica napus HOM05D007019 ORTHO05D008398 1.2e-89 334.7 538 40.7
Gohir.D05G063200 Gossypium hirsutum HOM05D007019 ORTHO05D008398 1.2e-89 334.7 518 41.9
COL.COLO4_18972 Corchorus olitorius HOM05D007019 ORTHO05D008398 1.6e-89 334.3 520 41.9
BolC8t51475H Brassica oleracea HOM05D007019 ORTHO05D008398 3.6e-89 333.2 538 40.5
AL4G15870 Arabidopsis lyrata HOM05D007019 ORTHO05D008398 4.7e-89 332.8 529 40.5
Sc23g0006120 Simmondsia chinensis HOM05D007019 ORTHO05D008398 6.3e-86 322.4 529 41.0
BcaC07g40903 Brassica carinata HOM05D007019 ORTHO05D008398 7.7e-84 315.5 520 39.8
TAR636G0280 Trochodendron aralioides HOM05D007019 ORTHO05D008398 3.0e-80 303.5 343 48.1
Nitab4.5_0000406g0110 Nicotiana tabacum HOM05D007019 ORTHO05D008398 2.6e-79 300.4 517 39.8
Sopen08g022560 Solanum pennellii HOM05D007019 ORTHO05D008398 1.3e-78 298.1 416 44.7
Nitab4.5_0012106g0030 Nicotiana tabacum HOM05D007019 ORTHO05D008398 1.7e-75 287.7 519 38.7
vmacro11274 Vaccinium macrocarpon HOM05D007019 ORTHO05D008398 1.1e-74 285.0 517 40.6
AagrBONN_evm.TU.Sc2ySwM_117.1463 Anthoceros agrestis HOM05D007019 ORTHO05D008398 1.2e-71 275.0 373 48.3
Dinv03401 Davidia involucrata HOM05D007019 ORTHO05D008398 2.6e-63 247.3 378 40.2
MD08G1051900 Malus domestica HOM05D007019 ORTHO05D008398 2.4e-61 240.7 373 41.3
SHI21092 Sapria himalayana HOM05D007019 ORTHO05D008398 4.0e-56 223.4 594 30.3
Hma1.2p1_0737F.1_g210800 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 7.5e-55 219.2 361 40.2
CBR_g30106 Chara braunii HOM05D007019 ORTHO05D008398 4.9e-54 216.5 561 33.5
GSVIVG01036005001 Vitis vinifera HOM05D007019 ORTHO05D008398 1.0e-43 182.2 191 49.7
Dinv10229 Davidia involucrata HOM05D007019 ORTHO05D008398 9.2e-37 159.1 366 32.5
SMO116G0105 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 5.2e-32 143.3 305 40.7
SMO269G0003 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 3.6e-25 120.6 308 38.0
AagrBONN_evm.TU.Sc2ySwM_117.1462 Anthoceros agrestis HOM05D007019 ORTHO05D008398 5.2e-24 116.7 154 46.8
Os02g0793000 Oryza sativa ssp. japonica HOM05D007019 ORTHO05D008398 2.0e-23 114.8 114 50.9
Peaxi162Scf01419g00115 Petunia axillaris HOM05D007019 ORTHO05D008398 9.2e-21 105.9 150 40.7
SalBow6G1623 Salvia bowleyana HOM05D007019 ORTHO05D008398 4.0e-16 90.5 187 38.0
arahy.Tifrunner.gnm1.ann1.J06XH2 Arachis hypogaea HOM05D004574 ORTHO05D005612 4.8e-09 67.0 99 42.4
Peaxi162Scf00347g00125 Petunia axillaris HOM05D004574 ORTHO05D005612 2.4e-08 64.7 58 56.9
SEGI_35117 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 4.0e-08 63.9 67 47.8
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 6.9e-08 63.2 54 55.6
arahy.Tifrunner.gnm1.ann1.YXSX85 Arachis hypogaea HOM05D004574 ORTHO05D005612 9.0e-08 62.8 99 41.4
CAN.G518.8 Capsicum annuum HOM05D004574 ORTHO05D005612 1.2e-07 62.4 53 56.6
SEGI_02942 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 1.2e-07 62.4 66 48.5
SEGI_19004 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 1.2e-07 62.4 64 50.0
SEGI_01205 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 2.6e-07 61.2 67 44.8
SEGI_12525 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 2.6e-07 61.2 66 47.0
SEGI_28893 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 2.6e-07 61.2 66 47.0
SEGI_38038 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 2.6e-07 61.2 66 47.0
Zm00001eb028250 Zea mays HOM05D004574 ORTHO05D005612 2.6e-07 61.2 59 50.8
Aqoxy7G03519 Aquilegia oxysepala HOM05D004574 ORTHO05D005612 4.5e-07 60.5 55 54.5
Nitab4.5_0001671g0130 Nicotiana tabacum HOM05D004574 ORTHO05D005612 4.5e-07 60.5 53 52.8
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 9.9e-07 59.3 56 50.0
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 9.9e-07 59.3 56 50.0
Migut.J01279 Erythranthe guttata HOM05D004574 ORTHO05D005612 9.9e-07 59.3 63 47.6
Glyma.13G156900 Glycine max HOM05D004574 ORTHO05D005612 9.9e-07 59.3 80 42.5
MD15G1158500 Malus domestica HOM05D004574 ORTHO05D005612 9.9e-07 59.3 56 50.0
SEGI_18864 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 9.9e-07 59.3 67 49.3
Sc18g0000060 Simmondsia chinensis HOM05D004574 ORTHO05D005612 9.9e-07 59.3 58 50.0
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 1.3e-06 58.9 54 51.9
Cc06_g07390 Coffea canephora HOM05D004574 ORTHO05D005612 1.3e-06 58.9 89 39.3
Lsat_1_v5_gn_8_60221 Lactuca sativa HOM05D004574 ORTHO05D005612 1.7e-06 58.5 48 56.2
Lj9A709T23 Lonicera japonica HOM05D004574 ORTHO05D005612 1.7e-06 58.5 56 50.0
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 1.7e-06 58.5 75 46.7
Nitab4.5_0001151g0100 Nicotiana tabacum HOM05D004574 ORTHO05D005612 1.7e-06 58.5 96 38.5
Sabra18G0096500 Salix brachista HOM05D004574 ORTHO05D005612 1.7e-06 58.5 76 42.1
SEGI_33529 Sequoiadendron giganteum HOM05D004574 ORTHO05D005612 1.7e-06 58.5 59 49.2
unitig_0.g517 Utricularia gibba HOM05D004574 ORTHO05D005612 1.7e-06 58.5 55 49.1
ECA236G2347 Erigeron canadensis HOM05D004574 ORTHO05D005612 2.2e-06 58.2 52 51.9
Medtr4g116570 Medicago truncatula HOM05D004574 ORTHO05D005612 2.2e-06 58.2 94 42.6
BcaC05g29707 Brassica carinata HOM05D004574 ORTHO05D005612 2.9e-06 57.8 74 44.6
Eucgr.L02934 Eucalyptus grandis HOM05D004574 ORTHO05D005612 2.9e-06 57.8 79 40.5
Lj4g0023014 Lotus japonicus HOM05D004574 ORTHO05D005612 3.8e-06 57.4 77 42.9
EL10Ac8g18810 Beta vulgaris HOM05D004574 ORTHO05D005612 4.9e-06 57.0 85 43.5
Glyma.17G104500 Glycine max HOM05D004574 ORTHO05D005612 4.9e-06 57.0 82 41.5
MBI14_g15649_MAGBIO Magnolia biondii HOM05D004574 ORTHO05D005612 4.9e-06 57.0 92 40.2
Prupe.7G253700 Prunus persica HOM05D004574 ORTHO05D005612 4.9e-06 57.0 56 51.8
SGA_v2.0_scaffold229G43349 Striga asiatica HOM05D004574 ORTHO05D005612 4.9e-06 57.0 119 33.6
AL3G21080 Arabidopsis lyrata HOM05D004574 ORTHO05D005612 6.4e-06 56.6 51 56.9
CARHR084360 Cardamine hirsuta HOM05D004574 ORTHO05D005612 6.4e-06 56.6 51 56.9
CsaV3_1G028540 Cucumis sativus L. HOM05D004574 ORTHO05D005612 6.4e-06 56.6 53 52.8
DCAR_017762 Daucus carota HOM05D004574 ORTHO05D005612 6.4e-06 56.6 54 50.0
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 6.4e-06 56.6 139 30.2
Solyc07g007040.4 Solanum lycopersicum HOM05D004574 ORTHO05D005612 6.4e-06 56.6 81 39.5
Sopen07g003110 Solanum pennellii HOM05D004574 ORTHO05D005612 6.4e-06 56.6 81 39.5
Duzib187G1624 Durio zibethinus HOM05D004574 ORTHO05D005612 8.4e-06 56.2 62 50.0
Eucgr.L03484 Eucalyptus grandis HOM05D004574 ORTHO05D005612 8.4e-06 56.2 85 38.8
Psat4g033240 Pisum sativum HOM05D004574 ORTHO05D005612 8.4e-06 56.2 74 44.6
Hund14397 Selenicereus undatus HOM05D004574 ORTHO05D005612 8.4e-06 56.2 100 37.0


User provided reference genes

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