Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 0.0e+00 1390.9 821 100.0
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 0.0e+00 1141.3 691 100.0
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 6.3e-221 771.5 825 58.3
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 4.0e-183 646.0 829 51.6
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 2.6e-182 643.3 813 50.3
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 2.4e-180 636.7 818 47.9
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 1.6e-179 634.0 826 50.0
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 4.6e-179 632.5 802 50.0
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 4.6e-179 632.5 819 51.4
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 4.6e-179 632.5 828 46.6
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 3.9e-178 629.4 822 47.4
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 6.6e-178 628.6 820 49.9
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.5e-177 627.5 822 47.2
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 1.5e-177 627.5 830 49.3
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 2.5e-177 626.7 829 50.9
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 4.3e-177 625.9 817 48.0
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 6.2e-176 622.1 839 46.8
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 1.4e-175 620.9 825 50.1
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 1.4e-175 620.9 827 47.6
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 3.1e-175 619.8 825 52.4
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 6.8e-175 618.6 825 46.4
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 2.0e-174 617.1 857 50.5
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 5.8e-174 615.5 819 48.4
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 2.9e-173 613.2 831 49.3
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 3.7e-173 612.8 841 48.9
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 1.1e-172 611.3 847 49.0
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.9e-172 610.5 831 49.3
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 5.4e-172 609.0 833 49.5
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 7.1e-172 608.6 829 48.7
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 2.1e-171 607.1 823 47.6
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 2.7e-171 606.7 794 48.4
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 1.0e-170 604.7 820 45.1
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.0e-170 604.7 829 49.0
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 1.0e-170 604.7 825 51.3
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 3.9e-170 602.8 729 50.9
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 5.1e-170 602.4 847 45.1
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 1.1e-169 601.3 837 46.4
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 1.1e-169 601.3 817 46.5
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 1.1e-169 601.3 825 50.2
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 2.5e-169 600.1 861 48.3
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 9.5e-169 598.2 827 46.3
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.6e-168 597.4 816 52.6
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 2.1e-168 597.0 825 45.5
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 6.2e-168 595.5 814 47.1
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 6.2e-168 595.5 836 48.8
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 8.1e-168 595.1 826 47.0
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.1e-168 595.1 818 46.5
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 6.8e-167 592.0 821 46.3
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 8.9e-167 591.7 820 46.1
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 2.0e-166 590.5 823 44.8
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.6e-166 590.1 818 45.7
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 6.4e-165 585.5 821 51.2
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 3.2e-164 583.2 827 48.6
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 3.2e-164 583.2 821 47.0
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 5.4e-164 582.4 816 45.3
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 7.1e-164 582.0 823 49.1
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 9.2e-164 581.6 821 49.9
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 1.2e-163 581.3 828 44.7
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 2.1e-163 580.5 817 46.0
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 4.6e-163 579.3 831 48.5
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 1.7e-162 577.4 826 46.5
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 1.1e-161 574.7 812 45.8
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.5e-161 573.5 818 44.7
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 3.3e-161 573.2 833 47.3
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 4.3e-161 572.8 822 44.6
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 4.3e-161 572.8 824 46.2
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 7.3e-161 572.0 831 44.6
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 7.3e-161 572.0 819 45.9
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 9.6e-161 571.6 841 50.7
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 2.1e-160 570.5 816 45.5
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 6.2e-160 568.9 847 44.6
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 6.8e-159 565.5 838 44.9
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 2.6e-158 563.5 820 44.8
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 2.6e-158 563.5 817 44.3
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 9.9e-158 561.6 818 43.5
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.7e-157 560.8 818 43.2
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 4.9e-157 559.3 814 47.3
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 6.4e-157 558.9 812 47.8
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.4e-156 557.8 816 45.3
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 1.9e-156 557.4 817 44.1
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 1.6e-155 554.3 826 48.1
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 2.3e-154 550.4 877 48.2
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 8.7e-154 548.5 826 47.9
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 3.3e-153 546.6 799 47.8
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 4.3e-153 546.2 770 45.5
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 9.6e-153 545.0 826 45.6
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 2.1e-152 543.9 823 46.5
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 4.8e-152 542.7 851 43.0
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.4e-151 540.4 827 44.7
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 3.1e-151 540.0 826 46.9
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 6.9e-151 538.9 826 46.9
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.8e-149 533.1 879 42.0
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 3.5e-147 526.6 757 49.4
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 9.6e-145 518.5 836 43.8
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.3e-144 518.1 837 43.8
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.4e-143 514.6 826 44.4
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.4e-140 503.8 802 41.3
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 9.3e-140 501.9 824 42.5
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 4.6e-139 499.6 825 44.6
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 1.0e-138 498.4 827 42.8
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 5.1e-138 496.1 521 54.1
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 4.3e-137 493.0 767 44.6
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 6.2e-136 489.2 836 42.6
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 8.1e-136 488.8 677 49.0
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 3.2e-132 476.9 808 39.4
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.1e-131 474.2 854 37.5
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 3.3e-129 466.8 922 42.1
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 9.6e-129 465.3 829 41.6
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 6.9e-127 459.1 816 40.0
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 2.3e-122 444.1 548 50.4
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.9e-121 441.0 436 52.5
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.1e-116 425.2 774 39.8
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 2.7e-115 420.6 847 40.4
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 7.9e-115 419.1 865 35.0
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 8.8e-114 415.6 811 35.6
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.7e-112 411.4 811 35.8
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 2.2e-112 411.0 811 35.4
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 9.1e-111 405.6 896 40.0
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 1.0e-109 402.1 590 45.8
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 6.5e-109 399.4 802 40.5
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 2.1e-99 367.9 668 46.0
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 7.2e-92 342.8 466 47.0
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 5.2e-90 336.7 570 45.6
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 2.0e-89 334.7 546 48.0
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.8e-85 320.5 475 51.4
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 5.7e-81 306.6 874 34.1
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 4.0e-74 283.9 303 50.8
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 2.9e-72 277.7 344 45.9
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 2.0e-70 271.6 527 35.5
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 1.6e-67 261.9 443 46.5
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 2.2e-64 251.5 500 34.6
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 8.6e-61 239.6 273 48.4
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.5e-60 238.0 510 38.2
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 8.1e-59 233.0 813 28.5
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 6.8e-58 229.9 456 35.1
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 2.6e-57 228.0 448 37.3
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 8.6e-45 186.4 177 56.5
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 6.2e-35 153.7 383 36.0
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 3.9e-29 134.4 397 44.8
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 8.1e-27 126.7 169 50.3
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.0e-26 124.4 415 29.4
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 7.1e-23 113.6 129 47.3
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.1e-19 102.1 313 30.0
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-17 96.3 334 27.8
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 3.4e-17 94.7 135 39.3
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.5e-17 94.4 113 46.9
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 3.8e-16 91.3 142 45.8
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 8.7e-13 80.1 75 54.7
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 8.7e-13 80.1 75 54.7
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.7e-12 76.6 83 51.8
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.6e-11 75.9 110 44.5
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 2.0e-09 68.9 70 51.4
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 7.6e-09 67.0 95 41.1
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 1.0e-08 66.6 84 45.2
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.2e-08 65.5 79 45.6
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.5e-08 63.5 83 44.6
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.4e-07 62.8 130 35.4
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.2e-07 61.2 141 33.3
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.5e-07 60.8 85 47.1
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 7.2e-07 60.5 96 39.6
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 4.6e-06 57.8 71 50.7
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 6.1e-06 57.4 51 60.8
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 6.1e-06 57.4 41 61.0


User provided reference genes

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