Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_3670 Physcomitrium patens HOM05D000825 ORTHO05D310741 3.1e-50 201.4 97 100.0
Pp3c19_3790 Physcomitrium patens HOM05D000825 ORTHO05D003462 6.3e-11 70.9 78 53.8
Pp3c18_20230 Physcomitrium patens HOM05D000825 ORTHO05D003462 4.1e-10 68.2 78 53.8
Mapoly0148s0041 Marchantia polymorpha HOM05D000825 ORTHO05D003462 6.9e-10 67.4 81 46.9
SMO147G0307 Selaginella moellendorffii HOM05D000825 ORTHO05D003462 4.5e-09 64.7 47 68.1
AagrBONN_evm.TU.Sc2ySwM_117.1672 Anthoceros agrestis HOM05D000825 ORTHO05D003462 7.6e-09 63.9 78 50.0
SalBow8G4626 Salvia bowleyana HOM05D000825 ORTHO05D003462 7.6e-09 63.9 47 66.0
ATR0686G235 Amborella trichopoda HOM05D000825 ORTHO05D003462 5.0e-08 61.2 47 66.0
ECA246G1715 Erigeron canadensis HOM05D007880 ORTHO05D003462 5.0e-08 61.2 81 40.7
Hma1.2p1_0014F.1_g009810 Hydrangea macrophylla HOM05D000825 ORTHO05D003462 5.0e-08 61.2 47 63.8
MCO01G697 Micromonas commoda HOM05D000825 ORTHO05D003462 5.0e-08 61.2 49 59.2
SEGI_32283 Sequoiadendron giganteum HOM05D000825 ORTHO05D003462 5.0e-08 61.2 47 66.0
Zm00001eb241560 Zea mays HOM05D000825 ORTHO05D003462 5.0e-08 61.2 47 63.8
MSTRG.13323 Avicennia marina HOM05D000825 ORTHO05D003462 6.5e-08 60.8 47 63.8
CAN.G1046.6 Capsicum annuum HOM05D000825 ORTHO05D003462 8.5e-08 60.5 47 63.8
Nitab4.5_0008861g0010 Nicotiana tabacum HOM05D000825 ORTHO05D003462 8.5e-08 60.5 47 63.8
Nitab4.5_0009657g0010 Nicotiana tabacum HOM05D000825 ORTHO05D003462 8.5e-08 60.5 47 63.8
Solyc06g071910.3 Solanum lycopersicum HOM05D000825 ORTHO05D003462 8.5e-08 60.5 47 63.8
Sopen06g028190 Solanum pennellii HOM05D000825 ORTHO05D003462 8.5e-08 60.5 47 63.8
PGSC0003DMG401026981 Solanum tuberosum HOM05D000825 ORTHO05D003462 8.5e-08 60.5 47 63.8
Zm00001eb086000 Zea mays HOM05D000825 ORTHO05D003462 8.5e-08 60.5 47 61.7
Zm00001eb420880 Zea mays HOM05D000825 ORTHO05D003462 8.5e-08 60.5 47 61.7
Nitab4.5_0001664g0110 Nicotiana tabacum HOM05D000825 ORTHO05D003462 1.1e-07 60.1 47 61.7
Nitab4.5_0005327g0030 Nicotiana tabacum HOM05D000825 ORTHO05D003462 1.1e-07 60.1 47 61.7
Oeu020313.1 Olea europaea HOM05D000825 ORTHO05D003462 1.1e-07 60.1 47 61.7
Peaxi162Scf00089g00334 Petunia axillaris HOM05D000825 ORTHO05D003462 1.1e-07 60.1 47 61.7
PGSC0003DMG400015249 Solanum tuberosum HOM05D000326 ORTHO05D003462 1.1e-07 60.1 47 61.7
Actinidia25600 Actinidia chinensis HOM05D000825 ORTHO05D003462 1.4e-07 59.7 47 61.7
CSS0005498 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003462 1.4e-07 59.7 47 61.7
Cfa018871 Carpinus fangiana HOM05D000825 ORTHO05D003462 1.4e-07 59.7 47 61.7
Haze_07255 Corylus avellana HOM05D000825 ORTHO05D003462 1.4e-07 59.7 47 61.7
CsaV3_2G025310 Cucumis sativus L. HOM05D000825 ORTHO05D003462 1.4e-07 59.7 47 61.7
QL10p004737 Quercus lobata HOM05D000825 ORTHO05D003462 1.4e-07 59.7 47 61.7
Rhsim12G0172600 Rhododendron simsii HOM05D000825 ORTHO05D003462 1.4e-07 59.7 47 61.7
SGA_v2.0_scaffold391G50641 Striga asiatica HOM05D000825 ORTHO05D003462 1.4e-07 59.7 47 61.7
Thecc.02G274100 Theobroma cacao HOM05D000825 ORTHO05D003462 1.4e-07 59.7 47 61.7
vmacro16653 Vaccinium macrocarpon HOM05D000825 ORTHO05D003462 1.4e-07 59.7 47 61.7
vmacro16661 Vaccinium macrocarpon HOM05D000825 ORTHO05D003462 1.4e-07 59.7 47 61.7
vmacro16715 Vaccinium macrocarpon HOM05D000825 ORTHO05D003462 1.4e-07 59.7 47 61.7
GSVIVG01010352001 Vitis vinifera HOM05D000825 ORTHO05D003462 1.4e-07 59.7 47 61.7
CiPaw.12G036600 Carya illinoinensis HOM05D000825 ORTHO05D003462 1.9e-07 59.3 47 61.7
ClCG08G017320 Citrullus lanatus HOM05D000825 ORTHO05D003462 1.9e-07 59.3 47 61.7
Nn3g16546 Nelumbo nucifera HOM05D000825 ORTHO05D003462 1.9e-07 59.3 47 59.6
PRCOL_00006078 Prasinoderma coloniale HOM05D000825 ORTHO05D003462 1.9e-07 59.3 47 61.7
SalBow2G2039 Salvia bowleyana HOM05D000825 ORTHO05D003462 1.9e-07 59.3 47 61.7
unitig_8.g2910 Utricularia gibba HOM05D000825 ORTHO05D003462 1.9e-07 59.3 47 61.7
Cpa.g.sc43.10 Carica papaya HOM05D000326 ORTHO05D003462 2.5e-07 58.9 47 61.7
Haze_27476 Corylus avellana HOM05D000182 ORTHO05D003462 2.5e-07 58.9 47 61.7
Eucgr.B03460 Eucalyptus grandis HOM05D000825 ORTHO05D003462 2.5e-07 58.9 47 59.6
Glyma.11G248000 Glycine max HOM05D000825 ORTHO05D003462 2.5e-07 58.9 47 59.6
Glyma.18G009200 Glycine max HOM05D000825 ORTHO05D003462 2.5e-07 58.9 47 59.6
MBI11_g00919_MAGBIO Magnolia biondii HOM05D000825 ORTHO05D003462 2.5e-07 58.9 47 59.6
Phvul.001G259400 Phaseolus vulgaris HOM05D000825 ORTHO05D003462 2.5e-07 58.9 47 59.6
TAR371G0583 Trochodendron aralioides HOM05D000825 ORTHO05D003462 2.5e-07 58.9 81 40.7
VMungo1383G2063 Vigna mungo HOM05D000825 ORTHO05D003462 2.5e-07 58.9 47 59.6
CDE09G0822 Ceratophyllum demersum HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 61.7
DCAR_007016 Daucus carota HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 59.6
DCAR_026480 Daucus carota HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 59.6
FvH4_5g07680 Fragaria vesca HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 59.6
FAN04G3121 Fragaria x ananassa HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 59.6
FAN08G3307 Fragaria x ananassa HOM05D000336 ORTHO05D002301 3.2e-07 58.5 47 59.6
FAN13G1781 Fragaria x ananassa HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 59.6
FAN18G1122 Fragaria x ananassa HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 59.6
FAN25G2037 Fragaria x ananassa HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 59.6
Gohir.D12G151800 Gossypium hirsutum HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 59.6
Gorai.008G164200 Gossypium raimondii HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 59.6
Lj3A1064T101 Lonicera japonica HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 59.6
MD14G1162300 Malus domestica HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 59.6
Manes.16G048001 Manihot esculenta HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 61.7
Oeu038668.1 Olea europaea HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 59.6
Rhsim12G0035300 Rhododendron simsii HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 61.7
RcHm_v2.0_Chr7g0190791 Rosa chinensis HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 59.6
GSVIVG01008491001 Vitis vinifera HOM05D000825 ORTHO05D003462 3.2e-07 58.5 47 61.7
Aqoxy7G03701 Aquilegia oxysepala HOM05D000825 ORTHO05D003462 4.2e-07 58.2 81 40.7
Migut.K00696 Erythranthe guttata HOM05D000825 ORTHO05D003462 4.2e-07 58.2 47 59.6
Manes.13G015500 Manihot esculenta HOM05D000825 ORTHO05D003462 4.2e-07 58.2 47 61.7
THA.LOC104807894 Tarenaya hassleriana HOM05D000825 ORTHO05D003462 4.2e-07 58.2 47 61.7
Zm00001eb387330 Zea mays HOM05D000825 ORTHO05D003462 4.2e-07 58.2 47 57.4
CANSAT01G3063 Cannabis sativa HOM05D000825 ORTHO05D003462 5.5e-07 57.8 47 55.3
CAN.G352.46 Capsicum annuum HOM05D000825 ORTHO05D003462 5.5e-07 57.8 47 59.6
THA.LOC104807673 Tarenaya hassleriana HOM05D000825 ORTHO05D003462 5.5e-07 57.8 47 59.6
Actinidia25759 Actinidia chinensis HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
Actinidia30677 Actinidia chinensis HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
arahy.Tifrunner.gnm1.ann1.41MNPY Arachis hypogaea HOM05D000326 ORTHO05D003462 7.2e-07 57.4 47 59.6
arahy.Tifrunner.gnm1.ann1.AITI1Z Arachis hypogaea HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
Cfa009313 Carpinus fangiana HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
CiPaw.06G099600 Carya illinoinensis HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
Cre03.g172000 Chlamydomonas reinhardtii HOM05D000326 ORTHO05D003462 7.2e-07 57.4 77 44.2
Haze_12367 Corylus avellana HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
Glyma.08G102100 Glycine max HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 57.4
Manes.12G014900 Manihot esculenta HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
Potri.008G178700 Populus trichocarpa HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
Potri.010G056100 Populus trichocarpa HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
PGR102G2248 Punica granatum HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
Rhsim12G0105500 Rhododendron simsii HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
Sabra10G0049100 Salix brachista HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
Sed0002703 Sechium edule HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
Sed0011399 Sechium edule HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
TAR374G0731 Trochodendron aralioides HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
TAR629G1450 Trochodendron aralioides HOM05D000825 ORTHO05D003462 7.2e-07 57.4 51 52.9
vmacro16135 Vaccinium macrocarpon HOM05D000825 ORTHO05D003462 7.2e-07 57.4 47 59.6
HPP92_006246 Vanilla planifolia HOM05D000825 ORTHO05D003462 7.2e-07 57.4 77 45.5
Ciclev10032120m.g Citrus clementina HOM05D000825 ORTHO05D003462 9.3e-07 57.0 47 59.6
Cc11_g16580 Coffea canephora HOM05D000825 ORTHO05D003462 9.3e-07 57.0 47 59.6
MBI16_g31132_MAGBIO Magnolia biondii HOM05D006380 ORTHO05D008400 9.3e-07 57.0 47 57.4
Medtr3g085740 Medicago truncatula HOM05D000825 ORTHO05D003462 9.3e-07 57.0 47 59.6
PSO063G2807 Papaver somniferum HOM05D000825 ORTHO05D003462 9.3e-07 57.0 47 57.4
PSO782G3575 Papaver somniferum HOM05D000825 ORTHO05D003462 9.3e-07 57.0 47 57.4
Sabra08G0136400 Salix brachista HOM05D000825 ORTHO05D003462 9.3e-07 57.0 47 57.4
Sc22g0004170 Simmondsia chinensis HOM05D000825 ORTHO05D003462 9.3e-07 57.0 47 55.3
TPR.G22432 Trifolium pratense HOM05D000825 ORTHO05D003462 9.3e-07 57.0 47 55.3
VMungo0251G1429 Vigna mungo HOM05D000825 ORTHO05D003462 9.3e-07 57.0 47 55.3
CSS0007515 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003462 1.2e-06 56.6 47 57.4
CSS0016665 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003462 1.2e-06 56.6 47 57.4
AUR62029827 Chenopodium quinoa HOM05D000825 ORTHO05D003462 1.2e-06 56.6 50 56.0
Eucgr.H04666 Eucalyptus grandis HOM05D000825 ORTHO05D003462 1.2e-06 56.6 47 57.4
Lsat_1_v5_gn_3_35520 Lactuca sativa HOM05D000825 ORTHO05D003462 1.2e-06 56.6 47 57.4
Lalb_Chr07g0187311 Lupinus albus HOM05D000825 ORTHO05D003462 1.2e-06 56.6 47 57.4
Nn4g22413 Nelumbo nucifera HOM05D000825 ORTHO05D003462 1.2e-06 56.6 47 57.4
Prupe.3G006500 Prunus persica HOM05D000825 ORTHO05D003462 1.2e-06 56.6 47 57.4
Atru.chr11.2243 Acer truncatum HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
Atru.chr11.2258 Acer truncatum HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
Aqoxy5G03522 Aquilegia oxysepala HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
arahy.Tifrunner.gnm1.ann1.40PBNN Arachis hypogaea HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
arahy.Tifrunner.gnm1.ann1.C6G01Q Arachis hypogaea HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
arahy.Tifrunner.gnm1.ann1.PBD1JU Arachis hypogaea HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
EL10As4g23463 Beta vulgaris HOM05D000825 ORTHO05D003462 1.6e-06 56.2 43 62.8
AUR62025864 Chenopodium quinoa HOM05D000825 ORTHO05D003462 1.6e-06 56.2 43 62.8
COL.COLO4_23619 Corchorus olitorius HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
Dinv11101 Davidia involucrata HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
Duzib248G1423 Durio zibethinus HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
Duzib268G0933 Durio zibethinus HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
FvH4_4g24340 Fragaria vesca HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
FAN07G2829 Fragaria x ananassa HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
FAN12G2870 Fragaria x ananassa HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
FAN17G0127 Fragaria x ananassa HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
FAN22G1830 Fragaria x ananassa HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
Lalb_Chr23g0277951 Lupinus albus HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
Oeu041688.5 Olea europaea HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 55.3
Peaxi162Scf00763g00326 Petunia axillaris HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 59.6
RcHm_v2.0_Chr4g0431201 Rosa chinensis HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
TWI18G0764 Tripterygium wilfordii HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
TWI36G1132 Tripterygium wilfordii HOM05D000825 ORTHO05D003462 1.6e-06 56.2 47 57.4
Ca_16484_v3 Cicer arietinum L. HOM05D000825 ORTHO05D003462 2.1e-06 55.8 47 55.3
Duzib251G0887 Durio zibethinus HOM05D000825 ORTHO05D003462 2.1e-06 55.8 47 57.4
Duzib268G0854 Durio zibethinus HOM05D000825 ORTHO05D003462 2.1e-06 55.8 47 57.4
Gohir.A05G311300 Gossypium hirsutum HOM05D000825 ORTHO05D003462 2.1e-06 55.8 47 57.4
Gohir.D05G312200 Gossypium hirsutum HOM05D000825 ORTHO05D003462 2.1e-06 55.8 47 57.4
Gorai.009G333600 Gossypium raimondii HOM05D000825 ORTHO05D003462 2.1e-06 55.8 47 57.4
Lj6g0005936 Lotus japonicus HOM05D000825 ORTHO05D003462 2.1e-06 55.8 47 57.4
Os04g0376300 Oryza sativa ssp. japonica HOM05D000825 ORTHO05D003462 2.1e-06 55.8 47 57.4
Psat5g094480 Pisum sativum HOM05D000825 ORTHO05D003462 2.1e-06 55.8 47 57.4
QL03p054773 Quercus lobata HOM05D000825 ORTHO05D003462 2.1e-06 55.8 47 55.3
Hund06063 Selenicereus undatus HOM05D000825 ORTHO05D003462 2.1e-06 55.8 81 42.0
Dinv14797 Davidia involucrata HOM05D000825 ORTHO05D003462 2.7e-06 55.5 47 57.4
Gohir.A03G128800 Gossypium hirsutum HOM05D000825 ORTHO05D003462 2.7e-06 55.5 47 57.4
Gohir.D02G152600 Gossypium hirsutum HOM05D000825 ORTHO05D003462 2.7e-06 55.5 47 57.4
Gorai.005G171600 Gossypium raimondii HOM05D000825 ORTHO05D003462 2.7e-06 55.5 47 57.4
Nitab4.5_0000240g0040 Nicotiana tabacum HOM05D000825 ORTHO05D003462 2.7e-06 55.5 47 57.4
Nitab4.5_0000581g0100 Nicotiana tabacum HOM05D000825 ORTHO05D003462 2.7e-06 55.5 47 57.4
Os12g0242700 Oryza sativa ssp. japonica HOM05D000825 ORTHO05D003462 2.7e-06 55.5 47 55.3
Peaxi162Scf00128g00834 Petunia axillaris HOM05D000825 ORTHO05D003462 2.7e-06 55.5 47 57.4
Phvul.002G176201 Phaseolus vulgaris HOM05D000326 ORTHO05D003462 2.7e-06 55.5 47 53.2
Solyc05g014560.3 Solanum lycopersicum HOM05D000825 ORTHO05D003462 2.7e-06 55.5 47 57.4
Sopen05g009610 Solanum pennellii HOM05D000825 ORTHO05D003462 2.7e-06 55.5 47 57.4
HanXRQChr10g0318431 Helianthus annuus HOM05D000825 ORTHO05D003462 3.6e-06 55.1 47 59.6
HanXRQChr17g0536131 Helianthus annuus HOM05D000825 ORTHO05D003462 3.6e-06 55.1 47 59.6
CDE08G0654 Ceratophyllum demersum HOM05D000336 ORTHO05D002301 4.6e-06 54.7 47 55.3
AUR62024161 Chenopodium quinoa HOM05D000825 ORTHO05D003462 4.6e-06 54.7 47 57.4
ECA246G2022 Erigeron canadensis HOM05D000825 ORTHO05D003462 4.6e-06 54.7 47 55.3
CSS0036031 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003462 6.1e-06 54.3 47 55.3
Hma1.2p1_0167F.1_g073820 Hydrangea macrophylla HOM05D000825 ORTHO05D003462 6.1e-06 54.3 47 55.3
MD13G1112000 Malus domestica HOM05D000825 ORTHO05D003462 6.1e-06 54.3 47 55.3
MD16G1111600 Malus domestica HOM05D000825 ORTHO05D003462 6.1e-06 54.3 47 55.3
Prupe.1G233400 Prunus persica HOM05D000825 ORTHO05D003462 6.1e-06 54.3 47 55.3
PGSC0003DMG400017459 Solanum tuberosum HOM05D000825 ORTHO05D003462 6.1e-06 54.3 47 55.3
Os02g0503500 Oryza sativa ssp. japonica HOM05D000825 ORTHO05D003462 7.9e-06 53.9 47 53.2


User provided reference genes

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