Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_260 Physcomitrium patens HOM05D007585 ORTHO05D009515 1.1e-176 623.2 321 100.0
Pp3c18_16700 Physcomitrium patens HOM05D007585 ORTHO05D009515 3.7e-68 262.7 321 51.1
Pp3c9_21140 Physcomitrium patens HOM05D007585 ORTHO05D009515 1.3e-28 131.3 118 57.6
Mapoly0064s0081 Marchantia polymorpha HOM05D007585 ORTHO05D009515 3.9e-17 93.2 219 31.1
SMO364G0716 Selaginella moellendorffii HOM05D007585 ORTHO05D009515 1.9e-16 90.9 172 34.9
Lj2A150G28 Lonicera japonica HOM05D007585 ORTHO05D009515 1.3e-15 88.2 195 29.7
HPP92_020739 Vanilla planifolia HOM05D007585 ORTHO05D009515 2.1e-15 87.4 173 31.8
Os10g0481450 Oryza sativa ssp. japonica HOM05D007585 ORTHO05D009515 2.8e-15 87.0 164 29.9
TWI81G0283 Tripterygium wilfordii HOM05D007585 ORTHO05D009515 3.6e-15 86.7 172 30.8
RcHm_v2.0_Chr7g0187881 Rosa chinensis HOM05D007585 ORTHO05D009515 6.2e-15 85.9 161 29.8
Zm00001eb045560 Zea mays HOM05D007585 ORTHO05D009515 6.2e-15 85.9 150 32.0
Aqoxy5G04360 Aquilegia oxysepala HOM05D007585 ORTHO05D009515 8.1e-15 85.5 187 31.0
Eucgr.E01096 Eucalyptus grandis HOM05D007585 ORTHO05D009515 8.1e-15 85.5 168 30.4
Gohir.A12G243000 Gossypium hirsutum HOM05D007585 ORTHO05D009515 8.1e-15 85.5 160 31.2
Gohir.D12G244000 Gossypium hirsutum HOM05D007585 ORTHO05D009515 8.1e-15 85.5 161 29.8
A09p50020 Brassica napus HOM05D002367 ORTHO05D009515 1.1e-14 85.1 160 31.9
BolC8t50858H Brassica oleracea HOM05D002367 ORTHO05D002566 1.1e-14 85.1 160 31.9
BraA09t40453Z Brassica rapa HOM05D007585 ORTHO05D009515 1.1e-14 85.1 160 31.9
CAN.G792.13 Capsicum annuum HOM05D007585 ORTHO05D009515 1.1e-14 85.1 227 25.6
FAN13G3159 Fragaria x ananassa HOM05D007585 ORTHO05D009515 1.1e-14 85.1 150 32.0
ATR0579G137 Amborella trichopoda HOM05D007585 ORTHO05D009515 1.4e-14 84.7 170 31.8
FAN08G0038 Fragaria x ananassa HOM05D007585 ORTHO05D009515 1.4e-14 84.7 154 30.5
FAN18G3755 Fragaria x ananassa HOM05D007585 ORTHO05D009515 1.4e-14 84.7 154 30.5
Nitab4.5_0000799g0090 Nicotiana tabacum HOM05D007585 ORTHO05D009515 1.4e-14 84.7 172 28.5
BcaC07g40025 Brassica carinata HOM05D007585 ORTHO05D009515 1.8e-14 84.3 157 31.8
Carub.0004s2815 Capsella rubella HOM05D007585 ORTHO05D009515 1.8e-14 84.3 157 31.8
BcaC07g40077 Brassica carinata HOM05D007585 ORTHO05D009515 2.4e-14 84.0 160 31.2
CANSAT21G1102 Cannabis sativa HOM05D007585 ORTHO05D009515 2.4e-14 84.0 230 26.1
Solyc08g013710.4 Solanum lycopersicum HOM05D007585 ORTHO05D009515 2.4e-14 84.0 172 28.5
Sopen08g004550 Solanum pennellii HOM05D007585 ORTHO05D009515 2.4e-14 84.0 172 28.5
Thecc.03G215100 Theobroma cacao HOM05D007585 ORTHO05D009515 3.1e-14 83.6 157 31.2
FvH4_5g10340 Fragaria vesca HOM05D007585 ORTHO05D009515 4.0e-14 83.2 162 29.6
Nitab4.5_0005519g0020 Nicotiana tabacum HOM05D007585 ORTHO05D009515 4.0e-14 83.2 224 25.4
PGR042G2790 Punica granatum HOM05D007585 ORTHO05D009515 4.0e-14 83.2 191 28.3
FAN04G1607 Fragaria x ananassa HOM05D007585 ORTHO05D009515 5.3e-14 82.8 161 31.1
Gorai.008G261500 Gossypium raimondii HOM05D007585 ORTHO05D009515 5.3e-14 82.8 161 29.2
Sp5g05480 Schrenkiella parvula HOM05D007585 ORTHO05D009515 5.3e-14 82.8 157 31.2
THA.LOC104823619 Tarenaya hassleriana HOM05D007585 ORTHO05D009515 5.3e-14 82.8 163 30.1
MSTRG.13690 Avicennia marina HOM05D007585 ORTHO05D009515 6.9e-14 82.4 156 30.1
C08p32430 Brassica napus HOM05D002367 ORTHO05D009515 9.0e-14 82.0 171 29.8
Manes.01G000124 Manihot esculenta HOM05D007585 ORTHO05D009515 9.0e-14 82.0 159 27.7
PGSC0003DMG400005804 Solanum tuberosum HOM05D007585 ORTHO05D009515 9.0e-14 82.0 156 30.1
Duzib205G0220 Durio zibethinus HOM05D007585 ORTHO05D009515 1.5e-13 81.3 236 27.5
Sed0016019 Sechium edule HOM05D007585 ORTHO05D009515 1.5e-13 81.3 161 28.0
Dinv08688 Davidia involucrata HOM05D007585 ORTHO05D009515 2.0e-13 80.9 172 28.5
AL4G44710 Arabidopsis lyrata HOM05D007585 ORTHO05D009515 2.6e-13 80.5 180 30.0
BcaC07g40047 Brassica carinata HOM05D007585 ORTHO05D009515 2.6e-13 80.5 157 29.3
CsaV3_5G001450 Cucumis sativus L. HOM05D007585 ORTHO05D009515 2.6e-13 80.5 184 28.3
TWI60G0621 Tripterygium wilfordii HOM05D007585 ORTHO05D009515 2.6e-13 80.5 171 28.7
Atru.chr9.1828 Acer truncatum HOM05D007585 ORTHO05D009515 3.4e-13 80.1 159 29.6
TAR376G0968 Trochodendron aralioides HOM05D007585 ORTHO05D009515 3.4e-13 80.1 157 28.7
Ciclev10023325m.g Citrus clementina HOM05D007585 ORTHO05D009515 4.5e-13 79.7 177 29.4
QL12p003204 Quercus lobata HOM05D007585 ORTHO05D009515 4.5e-13 79.7 195 28.7
Duzib084G0286 Durio zibethinus HOM05D007585 ORTHO05D009515 5.8e-13 79.3 175 29.1
Thhalv10006206m.g Eutrema salsugineum HOM05D007585 ORTHO05D009515 5.8e-13 79.3 159 29.6
PSO063G4912 Papaver somniferum HOM05D007585 ORTHO05D009515 5.8e-13 79.3 180 30.0
Sed0011209 Sechium edule HOM05D007585 ORTHO05D009515 5.8e-13 79.3 205 27.8
AT2G45530 Arabidopsis thaliana HOM05D007585 ORTHO05D009515 7.6e-13 79.0 157 29.3
PSO782G2000 Papaver somniferum HOM05D007585 ORTHO05D009515 7.6e-13 79.0 170 30.6
MELO3C005804.2 Cucumis melo HOM05D007585 ORTHO05D009515 9.9e-13 78.6 172 29.7
GSVIVG01019704001 Vitis vinifera HOM05D007585 ORTHO05D009515 9.9e-13 78.6 161 27.3
Sabra11G0134300 Salix brachista HOM05D007585 ORTHO05D009515 1.3e-12 78.2 205 27.3
Cpa.g.sc37.113 Carica papaya HOM05D007585 ORTHO05D009515 1.7e-12 77.8 157 29.3
Migut.E00714 Erythranthe guttata HOM05D007585 ORTHO05D009515 1.7e-12 77.8 157 29.9
Migut.O00718 Erythranthe guttata HOM05D007585 ORTHO05D009515 1.7e-12 77.8 157 29.9
Potri.011G149200 Populus trichocarpa HOM05D007585 ORTHO05D009515 1.7e-12 77.8 157 29.3
CDE04G3607 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 2.9e-12 77.0 216 25.5
Cc08_g17080 Coffea canephora HOM05D007585 ORTHO05D009515 4.9e-12 76.3 159 28.9
MBI04_g27762_MAGBIO Magnolia biondii HOM05D007585 ORTHO05D009515 4.9e-12 76.3 160 28.1
TAR375G0052 Trochodendron aralioides HOM05D007585 ORTHO05D009515 6.4e-12 75.9 160 28.8
Gorai.003G073200 Gossypium raimondii HOM05D007585 ORTHO05D009515 1.4e-11 74.7 157 29.3
Gohir.A02G094900 Gossypium hirsutum HOM05D007585 ORTHO05D009515 1.9e-11 74.3 157 28.7
CSS0006673 Camellia sinensis var. sinensis HOM05D007585 ORTHO05D009515 3.2e-11 73.6 150 30.0
CDE02G1447 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 3.2e-11 73.6 161 29.2
Zm00001eb221560 Zea mays HOM05D007585 ORTHO05D009515 3.2e-11 73.6 48 54.2
Haze_09220 Corylus avellana HOM05D007585 ORTHO05D009515 4.2e-11 73.2 159 28.9
Prupe.5G135500 Prunus persica HOM05D007585 ORTHO05D009515 4.2e-11 73.2 175 26.3
MBI12_g08710_MAGBIO Magnolia biondii HOM05D007585 ORTHO05D009515 5.4e-11 72.8 140 28.6
MD06G1124900 Malus domestica HOM05D007585 ORTHO05D009515 5.4e-11 72.8 164 28.0
Cfa011883 Carpinus fangiana HOM05D007585 ORTHO05D009515 7.1e-11 72.4 179 29.6
CiPaw.11G108300 Carya illinoinensis HOM05D007585 ORTHO05D009515 9.3e-11 72.0 150 30.7
Nn3g18759 Nelumbo nucifera HOM05D007585 ORTHO05D009515 9.3e-11 72.0 55 49.1
Potri.001G452800 Populus trichocarpa HOM05D007585 ORTHO05D009515 9.3e-11 72.0 155 28.4
CDE02G0183 Ceratophyllum demersum HOM05D002523 ORTHO05D002951 2.7e-10 70.5 114 32.5
Gohir.D03G088600 Gossypium hirsutum HOM05D007585 ORTHO05D009515 2.7e-10 70.5 157 29.9
Sabra16G0305900 Salix brachista HOM05D007585 ORTHO05D009515 2.7e-10 70.5 163 26.4
ClCG01G001320 Citrullus lanatus HOM05D007585 ORTHO05D009515 4.6e-10 69.7 58 48.3
CDE02G4680 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 6.0e-10 69.3 55 47.3
vmacro11475 Vaccinium macrocarpon HOM05D007585 ORTHO05D009515 6.0e-10 69.3 188 25.0
AagrBONN_evm.TU.Sc2ySwM_344.680 Anthoceros agrestis HOM05D007585 ORTHO05D009515 7.9e-10 68.9 56 50.0
CDE02G0688 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 8.7e-09 65.5 114 32.5
GSVIVG01019706001 Vitis vinifera HOM05D007585 ORTHO05D009515 8.7e-09 65.5 55 45.5
SGA_v2.0_scaffold99G29514 Striga asiatica HOM05D007585 ORTHO05D009515 1.1e-08 65.1 159 27.7
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.6e-07 61.2 75 40.0
Haze_24229 Corylus avellana HOM05D001002 ORTHO05D000802 1.6e-07 61.2 75 40.0
A04p05740 Brassica napus HOM05D001002 ORTHO05D000802 2.1e-07 60.8 62 45.2
Nitab4.5_0000880g0060 Nicotiana tabacum HOM05D001002 ORTHO05D000802 2.1e-07 60.8 75 37.3
BraA04t16269Z Brassica rapa HOM05D001002 ORTHO05D000802 2.8e-07 60.5 62 45.2
FAN23G1161 Fragaria x ananassa HOM05D005789 ORTHO05D007196 2.8e-07 60.5 157 29.3
FvH4_1g25260 Fragaria vesca HOM05D005789 ORTHO05D007196 3.7e-07 60.1 164 28.0
FAN19G1481 Fragaria x ananassa HOM05D005789 ORTHO05D007196 3.7e-07 60.1 164 28.0
GSVIVG01024828001 Vitis vinifera HOM05D001002 ORTHO05D000802 3.7e-07 60.1 65 40.0
C09p09520 Brassica napus HOM05D005789 ORTHO05D007196 8.1e-07 58.9 114 29.8
FAN28G0848 Fragaria x ananassa HOM05D005789 ORTHO05D007196 8.1e-07 58.9 166 27.7
Sabra16G0149800 Salix brachista HOM05D001002 ORTHO05D000802 8.1e-07 58.9 104 36.5
BolC4t25424H Brassica oleracea HOM05D001002 ORTHO05D000802 1.1e-06 58.5 62 41.9
HanXRQChr07g0201871 Helianthus annuus HOM05D001002 ORTHO05D000802 1.1e-06 58.5 144 30.6
Solyc06g005850.3 Solanum lycopersicum HOM05D001002 ORTHO05D000802 1.1e-06 58.5 63 41.3
Sopen06g001820 Solanum pennellii HOM05D001002 ORTHO05D000802 1.1e-06 58.5 84 34.5
PGSC0003DMG400020824 Solanum tuberosum HOM05D001002 ORTHO05D000802 1.1e-06 58.5 84 34.5
Atru.chr3.4043 Acer truncatum HOM05D001002 ORTHO05D000802 1.4e-06 58.2 51 47.1
BcaC02g09105 Brassica carinata HOM05D000958 ORTHO05D000802 1.8e-06 57.8 62 41.9
Cc05_g08510 Coffea canephora HOM05D001002 ORTHO05D000802 1.8e-06 57.8 64 39.1
TWI77G0349 Tripterygium wilfordii HOM05D001002 ORTHO05D000802 1.8e-06 57.8 148 27.7
BolC9t53864H Brassica oleracea HOM05D005789 ORTHO05D007196 2.4e-06 57.4 114 29.8
Nitab4.5_0000933g0120 Nicotiana tabacum HOM05D001002 ORTHO05D000802 2.4e-06 57.4 102 37.3
RcHm_v2.0_Chr2g0123181 Rosa chinensis HOM05D005789 ORTHO05D007196 2.4e-06 57.4 124 28.2
A09p08410 Brassica napus HOM05D005789 ORTHO05D007196 3.1e-06 57.0 98 32.7
BraA09t36491Z Brassica rapa HOM05D005789 ORTHO05D007196 3.1e-06 57.0 98 31.6
Potri.009G039700 Populus trichocarpa HOM05D001002 ORTHO05D000802 3.1e-06 57.0 75 40.0
BcaC04g23352 Brassica carinata HOM05D005789 ORTHO05D007196 4.0e-06 56.6 114 29.8
CAN.G394.94 Capsicum annuum HOM05D001002 ORTHO05D000802 4.0e-06 56.6 100 33.0
Ca_07592_v3 Cicer arietinum L. HOM05D001002 ORTHO05D000802 4.0e-06 56.6 127 27.6
Lalb_Chr13g0291311 Lupinus albus HOM05D001002 ORTHO05D000802 4.0e-06 56.6 78 38.5
Nitab4.5_0000744g0080 Nicotiana tabacum HOM05D001002 ORTHO05D000802 4.0e-06 56.6 102 37.3
CAN.G483.10 Capsicum annuum HOM05D001002 ORTHO05D000802 5.3e-06 56.2 63 41.3
CiPaw.13G084100 Carya illinoinensis HOM05D001002 ORTHO05D000802 5.3e-06 56.2 120 31.7
Thhalv10010904m.g Eutrema salsugineum HOM05D001002 ORTHO05D000802 5.3e-06 56.2 60 38.3
Cc01_g13620 Coffea canephora HOM05D001002 ORTHO05D000802 6.9e-06 55.8 72 34.7
DCAR_011770 Daucus carota HOM05D001002 ORTHO05D000802 6.9e-06 55.8 111 29.7
Lj4g0020231 Lotus japonicus HOM05D005789 ORTHO05D007196 6.9e-06 55.8 144 27.1
Lalb_Chr17g0346571 Lupinus albus HOM05D001002 ORTHO05D000802 6.9e-06 55.8 72 34.7
Thecc.05G026000 Theobroma cacao HOM05D001002 ORTHO05D000802 6.9e-06 55.8 65 38.5
AUR62000544 Chenopodium quinoa HOM05D005789 ORTHO05D007196 9.0e-06 55.5 59 42.4
AUR62006895 Chenopodium quinoa HOM05D005789 ORTHO05D007196 9.0e-06 55.5 59 42.4
Lj1g0019153 Lotus japonicus HOM05D001002 ORTHO05D000802 9.0e-06 55.5 114 28.1
Nitab4.5_0002458g0110 Nicotiana tabacum HOM05D001002 ORTHO05D000802 9.0e-06 55.5 113 32.7
QL01p028916 Quercus lobata HOM05D001002 ORTHO05D000802 9.0e-06 55.5 75 37.3
Sed0002540 Sechium edule HOM05D001002 ORTHO05D000802 9.0e-06 55.5 65 38.5


User provided reference genes

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