Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_2370 Physcomitrium patens HOM05D005827 ORTHO05D005864 1.6e-84 316.2 179 100.0
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 3.8e-22 109.0 160 46.2
AagrBONN_evm.TU.Sc2ySwM_228.4380 Anthoceros agrestis HOM05D005827 ORTHO05D005864 9.8e-18 94.4 96 61.5
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 9.8e-18 94.4 143 46.9
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 4.5e-15 85.5 147 44.9
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 7.7e-15 84.7 153 43.1
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 2.7e-12 76.3 140 42.1
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 1.0e-11 74.3 145 40.7
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 3.0e-11 72.8 143 40.6
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 8.8e-11 71.2 119 39.5
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 1.5e-10 70.5 110 46.4
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 1.5e-10 70.5 120 40.0
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 1.5e-10 70.5 141 37.6
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 2.0e-10 70.1 143 39.2
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 2.6e-10 69.7 122 41.0
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 3.4e-10 69.3 132 39.4
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 4.4e-10 68.9 116 39.7
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 4.4e-10 68.9 142 38.0
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 4.4e-10 68.9 123 41.5
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 5.7e-10 68.6 127 40.9
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 5.7e-10 68.6 130 40.8
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 7.5e-10 68.2 129 38.8
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 7.5e-10 68.2 130 38.5
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 9.8e-10 67.8 121 41.3
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 9.8e-10 67.8 141 41.1
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 9.8e-10 67.8 113 42.5
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 1.3e-09 67.4 110 46.4
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 1.7e-09 67.0 133 37.6
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 1.7e-09 67.0 133 37.6
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 2.2e-09 66.6 108 41.7
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 2.2e-09 66.6 133 36.1
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 2.8e-09 66.2 121 37.2
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 4.9e-09 65.5 122 41.8
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 4.9e-09 65.5 130 37.7
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 4.9e-09 65.5 130 37.7
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 6.3e-09 65.1 135 38.5
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 8.3e-09 64.7 114 37.7
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 8.3e-09 64.7 133 36.8
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 8.3e-09 64.7 133 35.3
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 1.1e-08 64.3 131 38.2
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 1.1e-08 64.3 133 36.8
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 1.4e-08 63.9 140 36.4
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 1.4e-08 63.9 109 41.3
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 1.4e-08 63.9 140 35.0
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 1.8e-08 63.5 141 39.0
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.8e-08 63.5 129 37.2
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 1.8e-08 63.5 121 40.5
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 2.4e-08 63.2 134 37.3
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 2.4e-08 63.2 120 40.8
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 2.4e-08 63.2 115 39.1
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 3.1e-08 62.8 149 35.6
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 3.1e-08 62.8 116 42.2
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 4.1e-08 62.4 131 38.2
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 4.1e-08 62.4 132 40.2
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 4.1e-08 62.4 131 38.2
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 5.4e-08 62.0 131 38.2
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 5.4e-08 62.0 109 40.4
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 7.0e-08 61.6 131 38.2
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 7.0e-08 61.6 135 39.3
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 9.1e-08 61.2 141 38.3
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 1.2e-07 60.8 115 36.5
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 1.2e-07 60.8 129 41.9
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 1.6e-07 60.5 101 43.6
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 2.7e-07 59.7 122 35.2
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 2.7e-07 59.7 128 38.3
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 2.7e-07 59.7 140 32.1
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 3.5e-07 59.3 146 37.0
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 3.5e-07 59.3 110 39.1
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 4.5e-07 58.9 114 37.7
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 4.5e-07 58.9 119 40.3
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 5.9e-07 58.5 141 37.6
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 1.0e-06 57.8 144 36.1
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 1.0e-06 57.8 130 36.9
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.0e-06 57.8 123 36.6
Cre06.g248800 Chlamydomonas reinhardtii HOM05D045397 ORTHO05D005864 1.3e-06 57.4 141 31.9
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 1.3e-06 57.4 121 38.8
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 1.3e-06 57.4 116 38.8
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.3e-06 57.4 123 36.6
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 1.3e-06 57.4 121 38.8
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 1.7e-06 57.0 132 35.6
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 2.3e-06 56.6 110 38.2
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 2.3e-06 56.6 116 40.5
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 2.9e-06 56.2 112 36.6
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 8.6e-06 54.7 112 36.6


User provided reference genes

Program Settings