Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.1e-134 483.8 275 100.0
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 8.7e-97 357.8 279 79.6
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 6.2e-42 175.6 122 68.9
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.2e-39 167.2 299 40.8
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.6e-37 161.0 139 63.3
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 4.6e-37 159.5 117 64.1
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 5.0e-36 156.0 173 50.3
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.5e-35 154.5 128 63.3
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.9e-35 154.1 116 65.5
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 7.3e-35 152.1 118 62.7
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 7.3e-35 152.1 122 61.5
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.2e-34 151.4 117 63.2
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 2.1e-34 150.6 119 63.0
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 3.6e-34 149.8 210 45.7
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 6.2e-34 149.1 132 56.8
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 6.2e-34 149.1 129 61.2
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 6.2e-34 149.1 129 61.2
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 8.1e-34 148.7 177 49.7
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.1e-33 148.3 133 57.9
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.1e-33 148.3 129 58.1
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.1e-33 148.3 117 62.4
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 1.8e-33 147.5 130 60.0
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.8e-33 147.5 116 62.9
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.8e-33 147.5 130 60.0
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 2.3e-33 147.1 117 63.2
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 3.1e-33 146.7 209 44.0
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.1e-33 146.7 117 62.4
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 4.0e-33 146.4 166 48.2
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 4.0e-33 146.4 166 48.2
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 4.0e-33 146.4 118 61.9
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 4.0e-33 146.4 131 60.3
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 4.0e-33 146.4 144 55.6
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 5.2e-33 146.0 117 61.5
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 6.8e-33 145.6 118 59.3
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 6.8e-33 145.6 135 54.8
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 8.9e-33 145.2 131 61.1
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 8.9e-33 145.2 216 45.8
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.2e-32 144.8 117 60.7
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.5e-32 144.4 218 44.0
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 1.5e-32 144.4 117 61.5
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.5e-32 144.4 134 56.0
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 2.0e-32 144.1 141 56.0
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.0e-32 144.1 124 58.1
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 2.0e-32 144.1 115 60.9
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 2.0e-32 144.1 119 58.0
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 2.6e-32 143.7 119 61.3
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 2.6e-32 143.7 206 43.7
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 2.6e-32 143.7 117 59.8
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 2.6e-32 143.7 117 59.8
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.6e-32 143.7 212 43.9
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.4e-32 142.9 117 59.0
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 4.4e-32 142.9 222 41.9
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.8e-32 142.5 120 60.8
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 5.8e-32 142.5 222 41.9
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 5.8e-32 142.5 118 61.9
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 5.8e-32 142.5 118 61.9
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 5.8e-32 142.5 120 59.2
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.5e-32 142.1 213 43.7
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 7.5e-32 142.1 110 63.6
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 7.5e-32 142.1 219 41.1
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 9.8e-32 141.7 176 47.2
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 9.8e-32 141.7 118 60.2
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 9.8e-32 141.7 212 44.8
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 9.8e-32 141.7 159 50.9
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 9.8e-32 141.7 132 56.1
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.3e-31 141.4 128 59.4
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 1.3e-31 141.4 132 59.1
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.3e-31 141.4 130 57.7
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.7e-31 141.0 120 57.5
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 2.2e-31 140.6 117 59.0
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 2.2e-31 140.6 128 57.8
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 2.9e-31 140.2 276 39.1
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.9e-31 140.2 110 62.7
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.7e-31 139.8 213 43.2
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 3.7e-31 139.8 191 44.0
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 4.9e-31 139.4 214 41.6
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 4.9e-31 139.4 135 57.8
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 4.9e-31 139.4 213 42.7
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.9e-31 139.4 213 42.7
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 4.9e-31 139.4 217 40.1
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 4.9e-31 139.4 213 43.2
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 4.9e-31 139.4 130 56.2
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 6.4e-31 139.0 119 59.7
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 8.3e-31 138.7 127 55.9
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-30 138.3 124 56.5
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.1e-30 138.3 124 56.5
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.1e-30 138.3 216 42.6
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.1e-30 138.3 212 43.9
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.1e-30 138.3 210 42.4
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.4e-30 137.9 110 62.7
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.4e-30 137.9 231 42.0
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.9e-30 137.5 213 42.7
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.9e-30 137.5 115 58.3
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 2.4e-30 137.1 272 37.5
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 2.4e-30 137.1 117 59.8
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.4e-30 137.1 120 59.2
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.4e-30 137.1 124 56.5
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 2.4e-30 137.1 211 43.1
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.4e-30 137.1 209 41.6
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.2e-30 136.7 119 58.8
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 3.2e-30 136.7 211 43.1
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 3.2e-30 136.7 118 60.2
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 3.2e-30 136.7 118 60.2
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.1e-30 136.3 124 58.9
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 4.1e-30 136.3 222 39.2
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 4.1e-30 136.3 196 44.9
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 4.1e-30 136.3 125 55.2
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 4.1e-30 136.3 119 58.0
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 5.4e-30 136.0 186 44.6
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 7.1e-30 135.6 124 58.9
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 7.1e-30 135.6 207 43.0
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 7.1e-30 135.6 130 51.5
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 7.1e-30 135.6 256 42.2
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 9.2e-30 135.2 122 57.4
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.6e-29 134.4 117 58.1
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.6e-29 134.4 122 57.4
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.6e-29 134.4 213 44.1
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.6e-29 134.4 248 35.9
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.1e-29 134.0 162 47.5
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 3.5e-29 133.3 134 55.2
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 4.6e-29 132.9 212 40.6
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 7.8e-29 132.1 126 55.6
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 7.8e-29 132.1 121 57.9
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 1.0e-28 131.7 133 54.1
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 1.3e-28 131.3 102 62.7
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.3e-28 131.3 110 58.2
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.7e-28 131.0 102 61.8
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.3e-28 130.6 113 56.6
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 3.0e-28 130.2 214 41.1
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 5.1e-28 129.4 207 41.1
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 5.1e-28 129.4 131 57.3
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.6e-28 129.0 120 55.0
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 6.6e-28 129.0 131 55.7
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.1e-27 128.3 121 54.5
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.5e-27 127.9 120 53.3
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 4.3e-27 126.3 207 40.6
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 5.6e-27 125.9 125 58.4
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 3.6e-26 123.2 110 56.4
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 6.2e-26 122.5 141 44.7
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 5.2e-25 119.4 101 58.4
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 2.0e-24 117.5 134 49.3
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 2.6e-24 117.1 91 63.7
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.9e-23 113.6 128 52.3
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 3.8e-23 113.2 100 56.0
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 6.4e-23 112.5 118 50.0
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.1e-22 109.8 110 53.6
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.1e-22 109.8 100 59.0
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 2.5e-19 100.5 121 46.3
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 7.3e-19 99.0 186 39.2
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 1.9e-14 84.3 130 45.4
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 2.7e-13 80.5 209 34.0
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 2.7e-13 80.5 70 54.3
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 1.6e-10 71.2 117 41.9


User provided reference genes

Program Settings