Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_2000 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.8e-34 147.5 70 100.0
Pp3c21_2022 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.8e-34 147.5 70 100.0
Ciclev10018283m.g Citrus clementina HOM05D007699 ORTHO05D009796 1.3e-13 79.3 48 75.0
EL10Ac6g13685 Beta vulgaris HOM05D007699 ORTHO05D009796 3.7e-13 77.8 59 64.4
EL10Ac6g13349 Beta vulgaris HOM05D007699 ORTHO05D009796 1.1e-12 76.3 48 77.1
Pp3c10_15080 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-12 76.3 49 73.5
Pp3c10_15084 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-12 76.3 49 73.5
Pp3s1006_30 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-12 76.3 49 73.5
Pp3s638_22 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-12 76.3 49 73.5
Pp3s677_10 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-12 76.3 49 73.5
Pp3s677_11 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-12 76.3 49 73.5
Phvul.008G062500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.4e-12 75.1 46 76.1
Pp3c15_10810 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.4e-12 75.1 54 68.5
Pp3c15_10813 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.4e-12 75.1 54 68.5
Pp3c15_10820 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.4e-12 75.1 54 68.5
Prupe.7G080000 Prunus persica HOM05D007699 ORTHO05D009796 2.4e-12 75.1 48 72.9
Pp3c1_6540 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.1e-12 74.7 51 72.5
Prupe.7G069600 Prunus persica HOM05D007699 ORTHO05D009796 5.3e-12 73.9 50 72.0
Ah.10g036850 Amaranthus hybridus HOM05D007699 ORTHO05D009796 1.2e-11 72.8 38 86.8
EL10Ac6g13683 Beta vulgaris HOM05D007699 ORTHO05D009796 1.6e-11 72.4 48 77.1
Medtr3g105890 Medicago truncatula HOM05D007699 ORTHO05D009796 1.6e-11 72.4 41 82.9
Pp3s677_20 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.0e-11 72.0 55 65.5
GSVIVG01037330001 Vitis vinifera HOM05D007699 ORTHO05D009796 2.0e-11 72.0 35 91.4
EL10Ac6g13624 Beta vulgaris HOM05D007699 ORTHO05D009796 2.6e-11 71.6 38 86.8
FAN08G2016 Fragaria x ananassa HOM05D007699 ORTHO05D009796 3.5e-11 71.2 41 80.5
A05p18230 Brassica napus HOM05D007699 ORTHO05D009796 4.5e-11 70.9 44 75.0
FvH4_3g13700 Fragaria vesca HOM05D007699 ORTHO05D009796 4.5e-11 70.9 40 82.5
FAN11G1327 Fragaria x ananassa HOM05D007699 ORTHO05D009796 4.5e-11 70.9 40 82.5
FAN11G3494 Fragaria x ananassa HOM05D007699 ORTHO05D009796 4.5e-11 70.9 40 82.5
Manes.11G145650 Manihot esculenta HOM05D007699 ORTHO05D009796 4.5e-11 70.9 38 84.2
Potri.011G103301 Populus trichocarpa HOM05D007699 ORTHO05D009796 4.5e-11 70.9 56 64.3
TPR.G32688 Trifolium pratense HOM05D007699 ORTHO05D009796 4.5e-11 70.9 55 69.1
Migut.J00839 Erythranthe guttata HOM05D007699 ORTHO05D009796 5.9e-11 70.5 41 73.2
EL10Ac6g13684 Beta vulgaris HOM05D007699 ORTHO05D009796 1.0e-10 69.7 49 69.4
Mapoly0020s0143 Marchantia polymorpha HOM05D007699 ORTHO05D009796 1.3e-10 69.3 40 80.0
Medtr3g084270 Medicago truncatula HOM05D007699 ORTHO05D009796 1.3e-10 69.3 38 81.6
Nn7g36904 Nelumbo nucifera HOM05D007699 ORTHO05D009796 1.3e-10 69.3 55 63.6
Solyc12g056290.2 Solanum lycopersicum HOM05D007699 ORTHO05D009796 1.3e-10 69.3 35 88.6
Pp3c24_6960 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.7e-10 68.9 36 83.3
Pp3c24_6961 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.7e-10 68.9 36 83.3
C03p91420 Brassica napus HOM05D007699 ORTHO05D009796 2.2e-10 68.6 37 83.8
CARHR088640 Cardamine hirsuta HOM05D007699 ORTHO05D009796 2.2e-10 68.6 49 71.4
FAN13G3199 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.2e-10 68.6 39 82.1
Phvul.001G084100 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.2e-10 68.6 41 75.6
Potri.011G103401 Populus trichocarpa HOM05D007699 ORTHO05D009796 2.2e-10 68.6 59 62.7
SHI29091 Sapria himalayana HOM05D007699 ORTHO05D009796 2.2e-10 68.6 35 85.7
arahy.Tifrunner.gnm1.ann1.3J1SD9 Arachis hypogaea HOM05D007699 ORTHO05D009796 2.9e-10 68.2 38 81.6
Phvul.001G066700 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.9e-10 68.2 36 83.3
TPR.G12299 Trifolium pratense HOM05D007699 ORTHO05D009796 2.9e-10 68.2 40 80.0
TPR.G38695 Trifolium pratense HOM05D000020 ORTHO05D000543 2.9e-10 68.2 40 80.0
EL10Ac6g13623 Beta vulgaris HOM05D007699 ORTHO05D009796 3.8e-10 67.8 35 85.7
Nitab4.5_0005352g0040 Nicotiana tabacum HOM05D007699 ORTHO05D009796 3.8e-10 67.8 54 66.7
arahy.Tifrunner.gnm1.ann1.3C01L3 Arachis hypogaea HOM05D007699 ORTHO05D009796 5.0e-10 67.4 35 85.7
Carub.0003s1340 Capsella rubella HOM05D007699 ORTHO05D009796 5.0e-10 67.4 35 85.7
CARHR185520 Cardamine hirsuta HOM05D007699 ORTHO05D009796 5.0e-10 67.4 53 66.0
FAN18G1300 Fragaria x ananassa HOM05D005738 ORTHO05D007135 5.0e-10 67.4 47 72.3
FAN18G3749 Fragaria x ananassa HOM05D005738 ORTHO05D007135 5.0e-10 67.4 47 72.3
Mapoly0086s0020 Marchantia polymorpha HOM05D007699 ORTHO05D009796 5.0e-10 67.4 35 85.7
Phvul.001G066900 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 5.0e-10 67.4 35 85.7
QL03p053410 Quercus lobata HOM05D007699 ORTHO05D009796 5.0e-10 67.4 37 83.8
Sopen12g028800 Solanum pennellii HOM05D007699 ORTHO05D009796 5.0e-10 67.4 35 85.7
Hma1.2p1_0886F.1_g232660 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 6.5e-10 67.0 40 77.5
Hma1.2p1_0886F.1_g232685 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 6.5e-10 67.0 40 77.5
FAN08G0324 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.9e-09 65.5 34 85.3
EL10Ac6g13625 Beta vulgaris HOM05D007699 ORTHO05D009796 3.2e-09 64.7 60 61.7
Gohir.D06G068332 Gossypium hirsutum HOM05D007699 ORTHO05D009796 4.2e-09 64.3 52 69.2
Pp3c1_26810 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.2e-08 62.8 33 84.8
Pp3c1_26830 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.2e-08 62.8 33 84.8
Phvul.001G090500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.1e-08 62.0 38 76.3
Pp3c24_16090 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-08 62.0 42 66.7
Pp3c24_16091 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-08 62.0 42 66.7
Gorai.010G079800 Gossypium raimondii HOM05D007699 ORTHO05D009796 1.0e-07 59.7 61 57.4
Thecc.10G037500 Theobroma cacao HOM05D007699 ORTHO05D009796 1.0e-07 59.7 70 51.4
EL10Ac6g13621 Beta vulgaris HOM05D007699 ORTHO05D009796 1.8e-07 58.9 34 76.5
CSS0023756 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 1.8e-07 58.9 43 62.8
Potri.005G055534 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.8e-07 58.9 33 81.8
Gorai.011G262200 Gossypium raimondii HOM05D007699 ORTHO05D009796 3.0e-07 58.2 31 83.9
Gorai.011G262800 Gossypium raimondii HOM05D007699 ORTHO05D009796 3.0e-07 58.2 38 68.4
Medtr8g461450 Medicago truncatula HOM05D007699 ORTHO05D009796 3.0e-07 58.2 31 83.9
Potri.005G055667 Populus trichocarpa HOM05D007699 ORTHO05D009796 3.0e-07 58.2 31 83.9
Pp3c27_1930 Physcomitrium patens HOM05D007699 ORTHO05D009796 5.2e-07 57.4 43 62.8
CSS0021910 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 6.7e-07 57.0 41 65.9
Carub.0006s3371 Capsella rubella HOM05D007699 ORTHO05D009796 1.2e-06 56.2 41 70.7
Medtr3g108610 Medicago truncatula HOM05D007699 ORTHO05D009796 1.2e-06 56.2 27 88.9
PGSC0003DMG400029597 Solanum tuberosum HOM05D000312 ORTHO05D000221 1.2e-06 56.2 31 80.6
FAN11G3758 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.5e-06 55.8 30 83.3
FAN18G1871 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.5e-06 55.8 30 83.3
Glyma.19G099100 Glycine max HOM05D007699 ORTHO05D009796 1.5e-06 55.8 30 83.3
Gohir.A11G277350 Gossypium hirsutum HOM05D007699 ORTHO05D009796 1.5e-06 55.8 30 83.3
Phvul.009G076400 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 3.3e-06 54.7 30 80.0
arahy.Tifrunner.gnm1.ann1.C3EWW9 Arachis hypogaea HOM05D007699 ORTHO05D009796 7.5e-06 53.5 30 80.0
SHI28974 Sapria himalayana HOM05D007699 ORTHO05D009796 9.7e-06 53.1 35 68.6


User provided reference genes

Program Settings