Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 0.0e+00 1303.1 646 100.0
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 6.4e-144 515.4 630 46.3
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 1.6e-131 474.2 629 43.4
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 2.8e-131 473.4 627 42.9
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 1.4e-130 471.1 641 41.5
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 3.1e-130 469.9 662 41.5
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 3.1e-130 469.9 639 42.6
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.9e-130 468.8 597 46.6
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 1.2e-129 468.0 639 41.9
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 1.5e-129 467.6 617 42.9
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 2.0e-129 467.2 630 43.5
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 2.6e-129 466.8 645 42.6
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 4.4e-129 466.1 631 42.2
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 5.8e-129 465.7 612 42.8
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 5.8e-129 465.7 637 42.7
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 1.3e-128 464.5 645 41.6
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.3e-128 464.5 645 42.6
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 2.2e-128 463.8 633 43.3
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 2.9e-128 463.4 651 41.9
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 4.9e-128 462.6 618 42.4
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 6.4e-128 462.2 638 41.8
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 6.4e-128 462.2 658 41.3
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 1.1e-127 461.5 620 42.4
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.1e-127 461.5 666 41.6
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.1e-127 461.5 645 42.3
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 1.4e-127 461.1 629 42.9
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 1.9e-127 460.7 613 43.1
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 1.9e-127 460.7 619 41.7
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 2.4e-127 460.3 630 43.0
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 3.2e-127 459.9 651 42.7
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 4.2e-127 459.5 637 42.1
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 4.2e-127 459.5 608 43.1
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 4.2e-127 459.5 645 42.0
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 5.4e-127 459.1 636 42.5
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 7.1e-127 458.8 666 41.7
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 7.1e-127 458.8 628 40.9
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 7.1e-127 458.8 608 42.9
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 9.3e-127 458.4 627 42.1
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 1.2e-126 458.0 635 41.7
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.2e-126 458.0 637 41.4
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 2.1e-126 457.2 633 41.7
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 2.1e-126 457.2 630 41.4
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 2.7e-126 456.8 651 41.5
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 2.7e-126 456.8 639 41.9
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 3.5e-126 456.4 622 42.4
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 3.5e-126 456.4 651 41.5
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 3.5e-126 456.4 607 42.7
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 3.5e-126 456.4 623 42.7
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 3.5e-126 456.4 624 43.3
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 4.6e-126 456.1 662 40.9
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 4.6e-126 456.1 631 42.9
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 6.0e-126 455.7 666 41.6
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 6.0e-126 455.7 636 41.7
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 7.9e-126 455.3 639 41.6
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 1.0e-125 454.9 647 41.0
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 1.0e-125 454.9 627 41.9
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 3.0e-125 453.4 630 42.4
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 5.1e-125 452.6 641 40.6
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 5.1e-125 452.6 611 43.0
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 5.1e-125 452.6 627 42.1
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 6.6e-125 452.2 639 42.4
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 8.7e-125 451.8 632 43.5
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 1.1e-124 451.4 633 40.3
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 1.3e-123 448.0 664 40.5
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 1.6e-123 447.6 637 40.5
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.6e-123 447.6 635 41.3
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 2.1e-123 447.2 610 43.4
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 4.8e-123 446.0 632 41.3
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 4.8e-123 446.0 637 41.6
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 4.8e-123 446.0 643 41.1
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 6.2e-123 445.7 645 41.4
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 8.1e-123 445.3 636 41.8
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 1.1e-122 444.9 616 40.1
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.1e-122 443.4 666 41.0
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 4.0e-122 443.0 656 39.8
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 5.3e-122 442.6 600 42.0
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 2.0e-121 440.7 602 41.9
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 2.0e-121 440.7 651 39.8
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 2.0e-121 440.7 614 41.9
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 3.4e-121 439.9 603 40.5
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 5.8e-121 439.1 641 41.5
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 7.6e-121 438.7 632 42.1
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 1.3e-120 438.0 636 41.5
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.3e-120 438.0 643 41.1
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 2.2e-120 437.2 624 41.8
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 2.2e-120 437.2 606 40.1
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 2.2e-120 437.2 610 41.3
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 2.9e-120 436.8 624 41.7
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 1.9e-119 434.1 607 40.9
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.9e-119 434.1 594 43.9
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 2.4e-119 433.7 623 40.3
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 3.2e-119 433.3 655 40.5
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 2.1e-118 430.6 631 40.6
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 1.3e-117 427.9 628 40.0
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.8e-117 427.6 608 40.1
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 1.1e-116 424.9 638 40.6
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 2.5e-116 423.7 666 39.2
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 7.4e-116 422.2 650 40.6
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 7.4e-116 422.2 607 41.5
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 1.8e-114 417.5 573 43.3
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.0e-109 401.7 567 41.6
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 1.8e-109 401.0 772 36.5
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 5.7e-108 396.0 576 40.1
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 6.5e-104 382.5 577 39.5
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 6.7e-101 372.5 639 38.2
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 5.3e-98 362.8 546 39.6
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 7.7e-97 359.0 586 35.3
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 7.2e-95 352.4 461 45.3
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 2.4e-90 337.4 491 41.5
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 7.9e-86 322.4 465 38.7
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 2.8e-83 313.9 588 36.1
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 3.5e-81 307.0 480 39.2
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 3.2e-63 247.3 281 47.3
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 2.7e-62 244.2 643 31.9
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 1.2e-57 228.8 207 53.1
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 5.2e-53 213.4 671 28.5
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 2.0e-52 211.5 379 35.6
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 5.7e-52 209.9 643 30.6
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 3.0e-48 197.6 686 27.1
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 1.8e-45 188.3 418 31.3
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 6.2e-38 163.3 253 38.3
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 3.4e-36 157.5 343 31.5
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 9.2e-34 149.4 237 41.4
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 9.2e-34 149.4 237 41.4
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 1.9e-31 141.7 210 36.7
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 2.5e-31 141.4 169 45.0
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.4e-26 125.6 241 36.9
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.4e-26 124.8 199 40.7
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.3e-23 114.4 296 32.1
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.6e-22 112.1 253 33.6
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.6e-22 112.1 273 32.2
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 4.7e-22 110.5 253 33.2
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 4.7e-22 110.5 253 33.2
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 1.4e-21 109.0 252 28.6
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 4.9e-19 100.5 118 44.9
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 2.4e-18 98.2 137 45.3
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 2.4e-18 98.2 412 27.9
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 2.4e-18 98.2 164 40.9
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 4.2e-18 97.4 123 45.5
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 7.1e-18 96.7 96 47.9
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.7e-17 94.7 131 41.2
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.7e-17 94.7 131 41.2
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 4.6e-17 94.0 131 41.2
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 6.0e-17 93.6 131 40.5
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 4.0e-13 80.9 152 26.3
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 1.8e-08 65.5 54 63.0
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 1.6e-06 58.9 67 44.8
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 6.2e-06 57.0 55 56.4


User provided reference genes

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