Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_18130 Physcomitrium patens HOM05D003580 ORTHO05D004441 0.0e+00 2194.5 1115 100.0
Mapoly0006s0304 Marchantia polymorpha HOM05D003580 ORTHO05D004441 0.0e+00 1089.7 1141 53.3
Pp3c18_6580 Physcomitrium patens HOM05D003580 ORTHO05D004441 3.1e-311 1072.0 714 75.1
Pp3c22_14630 Physcomitrium patens HOM05D003580 ORTHO05D004441 1.0e-269 934.1 1019 54.0
AagrBONN_evm.TU.Sc2ySwM_228.612 Anthoceros agrestis HOM05D003580 ORTHO05D004441 2.1e-267 926.4 1141 47.2
SEGI_21118 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.2e-228 795.0 999 44.8
ATR0743G251 Amborella trichopoda HOM05D003580 ORTHO05D004441 2.2e-216 756.9 1091 40.8
TAR633G0565 Trochodendron aralioides HOM05D003580 ORTHO05D004441 1.2e-214 751.1 1115 39.9
Potri.010G177200 Populus trichocarpa HOM05D003580 ORTHO05D004441 3.4e-209 733.0 1104 39.8
TAR362G0544 Trochodendron aralioides HOM05D003580 ORTHO05D004441 7.5e-209 731.9 1114 40.1
Manes.13G155600 Manihot esculenta HOM05D003580 ORTHO05D004441 4.6e-206 722.6 1113 39.5
Ca_10488_v3 Cicer arietinum L. HOM05D003580 ORTHO05D004441 7.8e-206 721.8 1097 40.1
QL01p005312 Quercus lobata HOM05D003580 ORTHO05D004441 7.8e-206 721.8 1115 39.1
SMO116G0219 Selaginella moellendorffii HOM05D003580 ORTHO05D004441 3.9e-205 719.5 1088 41.1
Potri.008G079700 Populus trichocarpa HOM05D003580 ORTHO05D004441 8.6e-205 718.4 1102 39.3
PGR042G2902 Punica granatum HOM05D003580 ORTHO05D004441 1.1e-204 718.0 1106 39.2
Nn1g09424 Nelumbo nucifera HOM05D003580 ORTHO05D004441 2.1e-203 713.8 1126 38.4
arahy.Tifrunner.gnm1.ann1.TPGZ8P Arachis hypogaea HOM05D003580 ORTHO05D004441 3.6e-203 713.0 1113 39.3
arahy.Tifrunner.gnm1.ann1.U0AKQE Arachis hypogaea HOM05D003580 ORTHO05D004441 1.0e-202 711.4 1113 39.2
Glyma.20G188500 Glycine max HOM05D003580 ORTHO05D004441 6.8e-202 708.8 1100 39.2
Lj5g0021899 Lotus japonicus HOM05D003580 ORTHO05D004441 6.8e-202 708.8 1100 39.6
Sp6g27860 Schrenkiella parvula HOM05D003580 ORTHO05D004441 2.6e-201 706.8 1105 39.0
Hund21939 Selenicereus undatus HOM05D003580 ORTHO05D004441 2.6e-201 706.8 1105 38.6
Ciclev10014110m.g Citrus clementina HOM05D003580 ORTHO05D004441 5.8e-201 705.7 1095 38.6
BolC3t13385H Brassica oleracea HOM05D003580 ORTHO05D004441 7.5e-201 705.3 1089 38.9
Actinidia22096 Actinidia chinensis HOM05D003580 ORTHO05D004441 1.7e-200 704.1 1107 38.6
C03p08900 Brassica napus HOM05D003580 ORTHO05D004441 1.7e-200 704.1 1089 38.9
Phvul.007G105200 Phaseolus vulgaris HOM05D003580 ORTHO05D004441 1.7e-200 704.1 1100 39.1
BcaB01g04993 Brassica carinata HOM05D003580 ORTHO05D004441 2.2e-200 703.7 1090 39.3
MBI18_g04901_MAGBIO Magnolia biondii HOM05D003580 ORTHO05D004441 2.2e-200 703.7 1106 39.2
Nn5g28173 Nelumbo nucifera HOM05D003580 ORTHO05D004441 2.9e-200 703.4 1101 38.1
TWI53G0960 Tripterygium wilfordii HOM05D003580 ORTHO05D004441 3.7e-200 703.0 1116 39.5
Lalb_Chr21g0313231 Lupinus albus HOM05D003580 ORTHO05D004441 4.9e-200 702.6 1108 39.1
Psat6g176280 Pisum sativum HOM05D003580 ORTHO05D004441 6.4e-200 702.2 1097 39.4
VMungo0720G1645 Vigna mungo HOM05D003580 ORTHO05D004441 6.4e-200 702.2 1096 38.6
CiPaw.04G180400 Carya illinoinensis HOM05D003580 ORTHO05D004441 1.1e-199 701.4 1114 39.0
BraA03t10094Z Brassica rapa HOM05D003580 ORTHO05D004441 1.9e-199 700.7 1090 39.0
Sabra10G0136200 Salix brachista HOM05D003580 ORTHO05D004441 7.0e-199 698.7 1146 38.1
GSVIVG01006267001 Vitis vinifera HOM05D003580 ORTHO05D004441 7.0e-199 698.7 1084 38.7
THA.LOC104820933 Tarenaya hassleriana HOM05D003580 ORTHO05D004441 1.6e-198 697.6 1113 39.2
Cfa002307 Carpinus fangiana HOM05D003580 ORTHO05D004441 2.7e-198 696.8 1105 39.6
AL6G27200 Arabidopsis lyrata HOM05D003580 ORTHO05D004441 4.6e-198 696.0 1109 39.1
Lalb_Chr02g0151301 Lupinus albus HOM05D003580 ORTHO05D004441 4.6e-198 696.0 1108 38.5
Eucgr.G00871 Eucalyptus grandis HOM05D003580 ORTHO05D004441 6.0e-198 695.7 1099 38.7
Carub.0006s1449 Capsella rubella HOM05D003580 ORTHO05D004441 7.8e-198 695.3 1098 39.0
CARHR197010 Cardamine hirsuta HOM05D003580 ORTHO05D004441 7.8e-198 695.3 1102 38.5
PSO063G3475 Papaver somniferum HOM05D003580 ORTHO05D004441 7.8e-198 695.3 1105 39.0
MD08G1237500 Malus domestica HOM05D003580 ORTHO05D004441 3.9e-197 693.0 1087 39.5
Sed0022441 Sechium edule HOM05D003580 ORTHO05D004441 5.0e-197 692.6 1102 38.5
A03p07660 Brassica napus HOM05D003580 ORTHO05D004441 6.6e-197 692.2 1095 39.1
BraA10t44342Z Brassica rapa HOM05D003580 ORTHO05D004441 6.6e-197 692.2 1094 38.8
Prupe.1G575000 Prunus persica HOM05D003580 ORTHO05D004441 6.6e-197 692.2 1098 39.5
MD15G1429400 Malus domestica HOM05D003580 ORTHO05D004441 1.5e-196 691.0 1087 39.7
RcHm_v2.0_Chr7g0220971 Rosa chinensis HOM05D003580 ORTHO05D004441 1.5e-196 691.0 1109 39.0
Sed0017385 Sechium edule HOM05D003580 ORTHO05D004441 1.5e-196 691.0 1088 38.4
Aqoxy6G00271 Aquilegia oxysepala HOM05D003580 ORTHO05D004441 1.9e-196 690.6 1105 38.1
PSO675G0774 Papaver somniferum HOM05D003580 ORTHO05D004441 2.5e-196 690.3 1109 38.6
AT5G16300 Arabidopsis thaliana HOM05D003580 ORTHO05D004441 3.3e-196 689.9 1104 38.5
CANSAT64G0454 Cannabis sativa HOM05D003580 ORTHO05D004441 3.3e-196 689.9 1094 38.9
Thhalv10012518m.g Eutrema salsugineum HOM05D003580 ORTHO05D004441 3.3e-196 689.9 1097 38.2
Glyma.10G201900 Glycine max HOM05D003580 ORTHO05D004441 3.3e-196 689.9 1100 38.8
Gorai.012G011900 Gossypium raimondii HOM05D003580 ORTHO05D004441 3.3e-196 689.9 1102 38.9
BolC9t58909H Brassica oleracea HOM05D003580 ORTHO05D004441 4.3e-196 689.5 1097 38.8
ClCG11G011150 Citrullus lanatus HOM05D003580 ORTHO05D004441 1.2e-195 688.0 1119 38.3
Gohir.D04G010100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 1.2e-195 688.0 1102 38.9
Gorai.009G355000 Gossypium raimondii HOM05D003580 ORTHO05D004441 2.1e-195 687.2 1113 38.4
MELO3C008782.2 Cucumis melo HOM05D003580 ORTHO05D004441 4.7e-195 686.0 1121 37.7
FAN18G2191 Fragaria x ananassa HOM05D003580 ORTHO05D004441 4.7e-195 686.0 1103 39.5
Actinidia30566 Actinidia chinensis HOM05D003580 ORTHO05D004441 1.1e-194 684.9 1106 38.6
PSO732G0238 Papaver somniferum HOM05D003580 ORTHO05D004441 1.8e-194 684.1 1109 38.3
CsaV3_2G009280 Cucumis sativus L. HOM05D003580 ORTHO05D004441 2.3e-194 683.7 1121 37.3
FAN08G0025 Fragaria x ananassa HOM05D003580 ORTHO05D004441 2.0e-193 680.6 1092 39.6
Gohir.D05G331100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 2.0e-193 680.6 1112 37.9
Gohir.A04G049300 Gossypium hirsutum HOM05D003580 ORTHO05D004441 2.6e-193 680.2 1110 37.8
Gohir.A05G405500 Gossypium hirsutum HOM05D003580 ORTHO05D004441 3.4e-193 679.9 1104 38.7
Sabra08G0059400 Salix brachista HOM05D003580 ORTHO05D004441 1.7e-192 677.6 1155 37.9
PGSC0003DMG400002624 Solanum tuberosum HOM05D003580 ORTHO05D004441 1.7e-192 677.6 1110 38.2
Sopen03g039520 Solanum pennellii HOM05D003580 ORTHO05D004441 4.9e-192 676.0 1106 38.1
FAN04G1111 Fragaria x ananassa HOM05D003580 ORTHO05D004441 1.9e-191 674.1 1091 39.4
AUR62000253 Chenopodium quinoa HOM05D003580 ORTHO05D004441 3.2e-191 673.3 1109 38.6
Solyc03g120700.3 Solanum lycopersicum HOM05D003580 ORTHO05D004441 4.1e-191 672.9 1109 38.2
COL.COLO4_02821 Corchorus olitorius HOM05D003580 ORTHO05D004441 4.6e-190 669.5 1147 37.5
Aa31LG11G13320 Aethionema arabicum HOM05D003580 ORTHO05D004441 5.1e-189 666.0 1122 37.0
EL10Ac4g10045 Beta vulgaris HOM05D003580 ORTHO05D004441 8.6e-189 665.2 1114 37.9
Migut.J00662 Erythranthe guttata HOM05D003580 ORTHO05D004441 8.6e-189 665.2 1110 38.1
Lj2A356T45 Lonicera japonica HOM05D003580 ORTHO05D004441 5.6e-188 662.5 1099 38.5
Ah.04g159420 Amaranthus hybridus HOM05D003580 ORTHO05D004441 7.3e-188 662.1 1138 37.6
Haze_24513 Corylus avellana HOM05D003580 ORTHO05D004441 8.1e-187 658.7 1189 37.0
HanXRQChr12g0356901 Helianthus annuus HOM05D003580 ORTHO05D004441 1.8e-186 657.5 1110 36.6
vmacro09152 Vaccinium macrocarpon HOM05D003580 ORTHO05D004441 3.1e-186 656.8 1226 34.3
ECA248G2481 Erigeron canadensis HOM05D003580 ORTHO05D004441 2.0e-185 654.1 1099 37.0
Thecc.05G131900 Theobroma cacao HOM05D003580 ORTHO05D004441 5.8e-185 652.5 1107 37.6
Cc06_g21420 Coffea canephora HOM05D003580 ORTHO05D004441 1.7e-184 651.0 1111 37.8
C09p60740 Brassica napus HOM05D003580 ORTHO05D004441 8.4e-184 648.7 1032 38.0
Lsat_1_v5_gn_1_58860 Lactuca sativa HOM05D003580 ORTHO05D004441 1.1e-183 648.3 1104 37.6
A10p22770 Brassica napus HOM05D003580 ORTHO05D004441 2.4e-183 647.1 1033 38.0
DCAR_019887 Daucus carota HOM05D003580 ORTHO05D004441 4.1e-183 646.4 1111 37.1
HPP92_017521 Vanilla planifolia HOM05D003580 ORTHO05D004441 6.0e-182 642.5 1141 36.5
HanXRQChr01g0024861 Helianthus annuus HOM05D003580 ORTHO05D004441 7.8e-182 642.1 1116 36.6
FAN13G3018 Fragaria x ananassa HOM05D003580 ORTHO05D004441 1.7e-181 641.0 1019 39.5
FvH4_5g28760 Fragaria vesca HOM05D003580 ORTHO05D004441 2.3e-181 640.6 971 40.1
Rhsim04G0086300 Rhododendron simsii HOM05D003580 ORTHO05D004441 3.9e-181 639.8 1208 34.5
CDE04G2219 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 1.9e-180 637.5 1054 38.0
Dinv20243 Davidia involucrata HOM05D003580 ORTHO05D004441 1.2e-179 634.8 1100 37.5
MSTRG.19281 Avicennia marina HOM05D003580 ORTHO05D004441 2.8e-179 633.6 1115 36.7
unitig_749.g14304 Utricularia gibba HOM05D003580 ORTHO05D004441 1.2e-177 628.2 1150 35.9
AUR62006600 Chenopodium quinoa HOM05D003580 ORTHO05D004441 1.5e-177 627.9 1113 38.2
Peaxi162Scf00076g00824 Petunia axillaris HOM05D003580 ORTHO05D004441 3.8e-176 623.2 1097 37.6
Oeu011931.1 Olea europaea HOM05D003580 ORTHO05D004441 1.9e-175 620.9 1095 36.8
Zm00001eb151630 Zea mays HOM05D003580 ORTHO05D004441 2.4e-175 620.5 1131 36.3
Zm00001eb369950 Zea mays HOM05D003580 ORTHO05D004441 9.3e-175 618.6 1119 36.4
TPR.G2546 Trifolium pratense HOM05D003580 ORTHO05D004441 2.1e-174 617.5 1097 37.1
CAN.G438.18 Capsicum annuum HOM05D003580 ORTHO05D004441 1.1e-172 611.7 1055 36.5
CSS0030366 Camellia sinensis var. sinensis HOM05D003580 ORTHO05D004441 1.9e-172 610.9 989 38.2
SHI02481 Sapria himalayana HOM05D003580 ORTHO05D004441 2.5e-172 610.5 1167 35.0
Os01g0777000 Oryza sativa ssp. japonica HOM05D003580 ORTHO05D004441 4.9e-168 596.3 1062 35.9
Duzib140G0001 Durio zibethinus HOM05D003580 ORTHO05D004441 8.4e-168 595.5 1115 36.1
Medtr1g492710 Medicago truncatula HOM05D003580 ORTHO05D004441 1.8e-165 587.8 1130 34.5
SGA_v2.0_scaffold31G12889 Striga asiatica HOM05D003580 ORTHO05D004441 9.0e-162 575.5 1046 35.9
Sc16g0010760 Simmondsia chinensis HOM05D003580 ORTHO05D004441 4.5e-161 573.2 943 37.0
Oeu055491.1 Olea europaea HOM05D003580 ORTHO05D004441 5.1e-157 559.7 1044 34.7
SGA_v2.0_scaffold13G06689 Striga asiatica HOM05D003580 ORTHO05D004441 2.5e-156 557.4 924 36.6
SEGI_09994 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.3e-147 528.5 662 45.8
CBR_g38826 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-124 449.9 942 34.0
Cpa.g.sc440.1 Carica papaya HOM05D003580 ORTHO05D004441 1.0e-120 439.1 759 36.4
Atru.chr10.106 Acer truncatum HOM05D003580 ORTHO05D004441 2.2e-115 421.4 751 36.6
SGA_v2.0_scaffold31G12887 Striga asiatica HOM05D003580 ORTHO05D004441 2.4e-114 417.9 956 32.2
Atru.chr10.124 Acer truncatum HOM05D003580 ORTHO05D004441 6.5e-112 409.8 738 36.4
Nitab4.5_0000001g0420 Nicotiana tabacum HOM05D003580 ORTHO05D004441 4.4e-108 397.1 1112 29.5
Dinv14589 Davidia involucrata HOM05D003580 ORTHO05D004441 9.2e-98 362.8 440 45.0
Cfa002308 Carpinus fangiana HOM05D003580 ORTHO05D004441 6.6e-96 356.7 430 44.7
SEGI_02361 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.5e-95 355.5 402 48.0
Dinv14590 Davidia involucrata HOM05D003580 ORTHO05D004441 1.9e-95 355.1 623 36.0
Nitab4.5_0000693g0020 Nicotiana tabacum HOM05D003580 ORTHO05D004441 3.6e-94 350.9 994 28.5
Atru.chr10.123 Acer truncatum HOM05D003580 ORTHO05D004441 5.2e-77 293.9 356 44.9
CDE02G3888 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 1.7e-72 278.9 460 38.9
CBR_g38824 Chara braunii HOM05D003580 ORTHO05D000002 2.1e-70 271.9 297 50.5
Atru.chr10.105 Acer truncatum HOM05D003580 ORTHO05D004441 1.1e-66 259.6 310 45.5
MCO16G457 Micromonas commoda HOM05D003580 ORTHO05D004441 6.9e-61 240.4 1035 24.4
Cre14.g628050 Chlamydomonas reinhardtii HOM05D003580 ORTHO05D004441 1.6e-57 229.2 1246 23.2
Eucgr.A01176 Eucalyptus grandis HOM05D003580 ORTHO05D004441 1.3e-54 219.5 526 29.5
PRCOL_00004619 Prasinoderma coloniale HOM05D003580 ORTHO05D004441 2.8e-54 218.4 1032 24.1
SEGI_02603 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.3e-48 199.5 404 32.9
SEGI_26119 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 8.7e-48 196.8 295 38.3
SEGI_41100 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.3e-47 194.5 402 33.8
BcaNung02234 Brassica carinata HOM05D003580 ORTHO05D004441 1.4e-45 189.5 343 37.6
SEGI_10162 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 8.2e-38 163.7 302 35.8
SEGI_17593 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.5e-34 151.0 159 42.8
SEGI_10836 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.0e-32 145.2 251 35.5
SEGI_20620 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.3e-30 139.8 158 41.1
SEGI_21703 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.7e-30 138.3 147 44.9
SEGI_01451 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.8e-30 137.9 159 41.5
SEGI_40357 Sequoiadendron giganteum HOM05D003580 ORTHO05D000003 1.8e-29 136.0 281 31.3
FvH4_3g34230 Fragaria vesca HOM05D003580 ORTHO05D004441 4.5e-28 131.3 162 44.4
SEGI_12986 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.6e-28 130.6 144 42.4
TPR.G7717 Trifolium pratense HOM05D003580 ORTHO05D004441 7.9e-25 120.6 115 47.8
SGA_v2.0_scaffold1489G53965 Striga asiatica HOM05D003580 ORTHO05D004441 6.7e-24 117.5 228 36.4
SEGI_22494 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.7e-22 112.8 131 42.0
SEGI_18317 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.7e-19 102.8 148 33.8
arahy.Tifrunner.gnm1.ann1.0G6L2R Arachis hypogaea HOM05D003580 ORTHO05D004441 3.8e-19 101.7 191 35.6
arahy.Tifrunner.gnm1.ann1.G7UC7Z Arachis hypogaea HOM05D003580 ORTHO05D004441 3.8e-19 101.7 150 40.7
Actinidia22485 Actinidia chinensis HOM05D003580 ORTHO05D004441 4.2e-18 98.2 177 35.6
SEGI_37648 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.2e-18 98.2 123 43.1
SEGI_24255 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 7.2e-18 97.4 141 34.0
SEGI_00259 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.6e-17 96.3 130 36.9
Cpa.g.sc272.6 Carica papaya HOM05D003580 ORTHO05D004441 6.7e-16 90.9 85 51.8
SEGI_40013 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.0e-15 89.4 146 36.3
SEGI_13143 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 9.7e-15 87.0 103 40.8
Cpa.g.c39794 Carica papaya HOM05D003580 ORTHO05D004441 3.7e-14 85.1 65 55.4
SEGI_23236 Sequoiadendron giganteum HOM05D003580 ORTHO05D000001 6.3e-14 84.3 116 32.8
SEGI_32072 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.4e-13 82.4 95 37.9
SEGI_37860 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.1e-13 82.0 117 32.5
SEGI_07846 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.3e-13 81.3 116 36.2
QL01p051611 Quercus lobata HOM05D003580 ORTHO05D004441 7.2e-10 70.9 107 38.3
SEGI_00546 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.1e-09 69.3 82 35.4
SEGI_06299 Sequoiadendron giganteum HOM05D003580 ORTHO05D019257 3.6e-09 68.6 56 62.5
BcaB04g17891 Brassica carinata HOM05D003580 ORTHO05D004441 2.6e-07 62.4 90 40.0
PSO063G6607 Papaver somniferum HOM05D003580 ORTHO05D004441 3.3e-07 62.0 100 38.0


User provided reference genes

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