Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 8.3e-148 526.9 252 100.0
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.7e-87 325.5 250 65.2
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 6.1e-66 255.0 179 65.4
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 1.1e-62 244.2 161 65.8
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 1.7e-60 236.9 167 64.1
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 8.5e-60 234.6 200 56.0
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 7.2e-59 231.5 174 60.3
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.2e-58 230.7 175 61.7
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 2.7e-58 229.6 168 61.9
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 3.6e-58 229.2 167 61.1
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 3.6e-58 229.2 167 64.1
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 1.4e-57 227.3 171 60.8
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 2.3e-57 226.5 165 63.0
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 3.0e-57 226.1 164 61.0
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 3.0e-57 226.1 174 58.0
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 3.0e-57 226.1 174 58.0
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 5.2e-57 225.3 169 61.5
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 5.2e-57 225.3 164 63.4
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 5.2e-57 225.3 167 61.7
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 5.2e-57 225.3 164 63.4
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 6.7e-57 224.9 164 63.4
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 6.7e-57 224.9 164 63.4
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 8.8e-57 224.6 162 65.4
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.1e-56 224.2 167 61.7
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.1e-56 224.2 169 62.1
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.1e-56 224.2 162 64.2
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.1e-56 224.2 162 64.2
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.5e-56 223.8 164 62.8
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.5e-56 223.8 165 63.0
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.0e-56 223.4 169 60.4
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.0e-56 223.4 167 61.1
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 2.0e-56 223.4 167 61.1
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 2.0e-56 223.4 167 60.5
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.6e-56 223.0 168 60.1
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 3.3e-56 222.6 167 61.7
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.3e-56 222.6 164 62.8
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 3.3e-56 222.6 197 55.8
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 3.3e-56 222.6 165 61.8
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 4.4e-56 222.2 164 62.2
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 4.4e-56 222.2 179 58.1
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.7e-56 221.9 171 60.2
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 5.7e-56 221.9 164 61.6
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 5.7e-56 221.9 168 61.9
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 5.7e-56 221.9 164 62.2
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 5.7e-56 221.9 164 61.6
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 5.7e-56 221.9 164 61.6
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 9.7e-56 221.1 164 62.2
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 9.7e-56 221.1 164 61.6
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 9.7e-56 221.1 162 61.7
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 9.7e-56 221.1 170 60.6
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 1.3e-55 220.7 162 61.7
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.3e-55 220.7 167 60.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.7e-55 220.3 168 59.5
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.7e-55 220.3 168 59.5
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.7e-55 220.3 170 58.8
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.7e-55 220.3 174 58.6
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 2.8e-55 219.5 167 60.5
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 2.8e-55 219.5 167 60.5
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 2.8e-55 219.5 181 58.6
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 3.7e-55 219.2 164 62.2
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.8e-55 218.8 179 56.4
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.8e-55 218.8 179 56.4
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 4.8e-55 218.8 177 57.6
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 4.8e-55 218.8 164 61.0
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 4.8e-55 218.8 167 59.9
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 6.3e-55 218.4 163 60.7
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 6.3e-55 218.4 179 55.9
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 6.3e-55 218.4 165 61.8
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 6.3e-55 218.4 168 58.9
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 8.2e-55 218.0 163 60.7
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 8.2e-55 218.0 165 58.8
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 8.2e-55 218.0 167 59.9
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 8.2e-55 218.0 246 46.3
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.4e-54 217.2 167 61.1
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 1.4e-54 217.2 171 59.6
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.4e-54 217.2 165 59.4
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 1.4e-54 217.2 165 59.4
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.4e-54 217.2 165 60.6
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 2.4e-54 216.5 191 57.1
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.4e-54 216.5 168 58.3
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 3.1e-54 216.1 164 60.4
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 3.1e-54 216.1 165 59.4
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 4.1e-54 215.7 165 58.2
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 4.1e-54 215.7 171 57.3
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 4.1e-54 215.7 165 60.6
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 4.1e-54 215.7 162 61.1
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 5.3e-54 215.3 175 56.0
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 5.3e-54 215.3 168 60.1
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 7.0e-54 214.9 166 59.6
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 9.1e-54 214.5 192 56.2
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.2e-53 214.2 165 60.6
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 2.0e-53 213.4 164 60.4
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 2.0e-53 213.4 164 59.8
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 3.5e-53 212.6 165 60.0
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 4.5e-53 212.2 176 55.1
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 5.9e-53 211.8 165 59.4
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 5.9e-53 211.8 163 59.5
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 7.7e-53 211.5 188 55.3
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 7.7e-53 211.5 163 59.5
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.3e-52 210.7 167 57.5
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 1.7e-52 210.3 168 57.7
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 1.7e-52 210.3 215 50.7
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 8.5e-52 208.0 237 47.7
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 8.5e-52 208.0 178 54.5
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.1e-51 207.6 164 59.8
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.1e-51 207.6 163 58.9
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 3.2e-51 206.1 175 56.6
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 5.5e-51 205.3 165 59.4
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.5e-51 205.3 178 53.4
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 9.4e-51 204.5 170 53.5
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 9.4e-51 204.5 168 56.0
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 1.2e-50 204.1 173 57.2
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.6e-50 203.8 174 56.9
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.6e-50 203.8 176 55.7
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 2.1e-50 203.4 177 54.2
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 2.1e-50 203.4 204 51.0
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 3.6e-50 202.6 165 58.2
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 3.6e-50 202.6 165 58.2
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 4.7e-50 202.2 165 58.2
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 6.1e-50 201.8 178 54.5
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 6.1e-50 201.8 178 54.5
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 6.1e-50 201.8 165 58.8
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 8.0e-50 201.4 146 62.3
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 1.5e-48 197.2 141 63.1
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 2.8e-47 193.0 164 52.4
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.8e-47 193.0 139 61.9
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.8e-47 192.2 139 62.6
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 7.7e-45 184.9 174 52.3
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 7.7e-45 184.9 183 53.0
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 2.9e-44 183.0 138 62.3
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.5e-43 180.6 164 52.4
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.9e-43 180.3 177 51.4
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.7e-42 175.6 177 48.6
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 6.1e-42 175.3 137 56.9
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 1.0e-41 174.5 166 50.6
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 3.4e-40 169.5 136 58.1
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.7e-39 167.2 158 53.8
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.8e-39 165.6 140 59.3
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.1e-38 164.5 143 58.0
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.7e-37 159.8 184 47.3
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 3.8e-36 156.0 111 66.7
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 2.4e-30 136.7 168 44.6
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 5.4e-30 135.6 173 42.8
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.7e-29 133.3 94 64.9
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 3.5e-29 132.9 164 43.3
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 2.1e-26 123.6 212 32.5
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 2.2e-23 113.6 141 41.1
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 4.9e-23 112.5 137 46.7
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 7.0e-22 108.6 138 44.2
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 7.0e-22 108.6 78 61.5
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.6e-20 102.1 135 40.7
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.5e-19 100.1 75 62.7
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 5.8e-16 89.0 96 47.9
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 2.9e-15 86.7 63 65.1
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 6.4e-15 85.5 52 67.3
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.4e-14 84.3 73 56.2
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.7e-13 80.1 68 52.9
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 4.6e-13 79.3 76 46.1
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 4.7e-10 69.3 70 44.3
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.9e-07 59.3 51 51.0
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 8.3e-07 58.5 44 56.8


User provided reference genes

Program Settings