Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_1570 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.3e-154 549.7 270 100.0
Mapoly0103s0031 Marchantia polymorpha HOM05D007819 ORTHO05D009848 3.6e-80 302.4 255 60.0
PSO339G1273 Papaver somniferum HOM05D007819 ORTHO05D009848 6.7e-79 298.1 263 53.2
Oeu017391.1 Olea europaea HOM05D007819 ORTHO05D009848 8.8e-79 297.7 255 55.7
PSO384G2242 Papaver somniferum HOM05D007819 ORTHO05D009848 8.8e-79 297.7 261 54.0
Nn2g10668 Nelumbo nucifera HOM05D007819 ORTHO05D009848 2.5e-78 296.2 288 51.4
TAR623G0280 Trochodendron aralioides HOM05D007819 ORTHO05D009848 2.8e-77 292.7 259 52.9
Manes.04G025500 Manihot esculenta HOM05D007819 ORTHO05D009848 6.3e-77 291.6 264 51.1
TWI75G0698 Tripterygium wilfordii HOM05D007819 ORTHO05D009848 1.1e-76 290.8 282 50.0
CANSAT54G2163 Cannabis sativa HOM05D007819 ORTHO05D009848 5.3e-76 288.5 267 51.3
Atru.chr3.3713 Acer truncatum HOM05D007819 ORTHO05D009848 9.1e-76 287.7 256 53.1
Gohir.A09G105900 Gossypium hirsutum HOM05D007819 ORTHO05D009848 2.6e-75 286.2 268 50.4
Sopen06g001100 Solanum pennellii HOM05D007819 ORTHO05D009848 1.3e-74 283.9 257 52.9
Migut.N02626 Erythranthe guttata HOM05D007819 ORTHO05D009848 2.2e-74 283.1 267 51.3
Gorai.006G121000 Gossypium raimondii HOM05D007819 ORTHO05D009848 2.9e-74 282.7 266 49.6
Thecc.09G261200 Theobroma cacao HOM05D007819 ORTHO05D009848 5.0e-74 282.0 264 50.4
PGR102G1079 Punica granatum HOM05D007819 ORTHO05D009848 3.2e-73 279.3 250 51.6
FAN21G3467 Fragaria x ananassa HOM05D007819 ORTHO05D009848 1.2e-72 277.3 269 50.6
COL.COLO4_25254 Corchorus olitorius HOM05D007819 ORTHO05D009848 1.6e-72 276.9 253 50.2
Duzib168G1088 Durio zibethinus HOM05D007819 ORTHO05D009848 2.1e-72 276.6 278 48.2
RcHm_v2.0_Chr5g0060991 Rosa chinensis HOM05D007819 ORTHO05D009848 2.1e-72 276.6 267 49.1
FAN25G2530 Fragaria x ananassa HOM05D007819 ORTHO05D009848 2.7e-72 276.2 269 50.9
Cc01_g11630 Coffea canephora HOM05D007819 ORTHO05D009848 2.6e-70 269.6 253 50.6
Gohir.A05G074800 Gossypium hirsutum HOM05D007819 ORTHO05D009848 3.3e-70 269.2 269 47.2
Gohir.D09G102600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 3.3e-70 269.2 248 50.8
Gohir.D05G077600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 4.4e-70 268.9 269 47.2
Gorai.009G079100 Gossypium raimondii HOM05D007819 ORTHO05D009848 4.4e-70 268.9 269 47.2
Eucgr.B02464 Eucalyptus grandis HOM05D007819 ORTHO05D009848 8.2e-69 264.6 244 51.2
Gohir.A05G074866 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.4e-68 263.8 269 46.5
CiPaw.13G106200 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.2e-67 260.8 253 47.4
MD11G1124900 Malus domestica HOM05D007819 ORTHO05D009848 4.5e-67 258.8 263 47.1
Hma1.2p1_2033F.1_g311900 Hydrangea macrophylla HOM05D007819 ORTHO05D009848 7.7e-67 258.1 244 48.8
MD03G1111000 Malus domestica HOM05D007819 ORTHO05D009848 3.8e-66 255.8 263 47.5
Lsat_1_v5_gn_2_25861 Lactuca sativa HOM05D007819 ORTHO05D009848 5.0e-66 255.4 243 50.6
Nitab4.5_0007369g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 3.2e-65 252.7 281 45.6
Nitab4.5_0000888g0180 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.2e-64 250.8 274 46.0
SGA_v2.0_scaffold2G00920 Striga asiatica HOM05D007819 ORTHO05D009848 1.5e-62 243.8 214 53.7
QL01p036876 Quercus lobata HOM05D007819 ORTHO05D009848 9.7e-62 241.1 268 44.0
FAN16G1444 Fragaria x ananassa HOM05D007819 ORTHO05D009848 3.7e-61 239.2 343 39.4
CiPaw.14G077600 Carya illinoinensis HOM05D007819 ORTHO05D009848 4.1e-60 235.7 261 44.1
FvH4_3g33520 Fragaria vesca HOM05D007819 ORTHO05D009848 5.3e-60 235.3 191 56.0
DCAR_005475 Daucus carota HOM05D007819 ORTHO05D009848 2.6e-59 233.0 218 50.9
unitig_699.g19198 Utricularia gibba HOM05D007819 ORTHO05D009848 2.6e-59 233.0 277 44.8
Cpa.g.sc318.6 Carica papaya HOM05D007819 ORTHO05D009848 1.0e-58 231.1 180 57.2
Sc21g0003720 Simmondsia chinensis HOM05D007819 ORTHO05D009848 3.8e-58 229.2 180 56.1
Pp3c15_22830 Physcomitrium patens HOM05D007819 ORTHO05D009848 3.2e-57 226.1 285 44.2
AUR62006507 Chenopodium quinoa HOM05D007819 ORTHO05D009848 4.2e-57 225.7 271 43.2
HPP92_025075 Vanilla planifolia HOM05D007819 ORTHO05D009848 7.2e-57 224.9 257 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1297 Anthoceros agrestis HOM05D007819 ORTHO05D009848 1.2e-56 224.2 256 47.3
CiPaw.14G077700 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.2e-56 224.2 180 56.1
Zm00001eb013150 Zea mays HOM05D007819 ORTHO05D009848 1.0e-55 221.1 258 43.4
Mapoly0035s0019 Marchantia polymorpha HOM05D007819 ORTHO05D009848 2.3e-55 219.9 256 46.1
Pp3c9_23950 Physcomitrium patens HOM05D007819 ORTHO05D009848 3.0e-55 219.5 286 42.7
Mapoly0155s0016 Marchantia polymorpha HOM05D007819 ORTHO05D009848 5.2e-55 218.8 254 46.1
Mapoly0008s0213 Marchantia polymorpha HOM05D007819 ORTHO05D009848 2.6e-54 216.5 256 44.9
AagrBONN_evm.TU.Sc2ySwM_344.3840 Anthoceros agrestis HOM05D007819 ORTHO05D009848 4.4e-54 215.7 256 45.3
CiPaw.13G106300 Carya illinoinensis HOM05D007819 ORTHO05D009848 7.0e-52 208.4 170 55.3
Haze_23935 Corylus avellana HOM05D007819 ORTHO05D009848 1.6e-51 207.2 185 51.9
Lj1A183T52 Lonicera japonica HOM05D007819 ORTHO05D009848 2.0e-51 206.8 251 42.2
Peaxi162Scf00389g00619 Petunia axillaris HOM05D007819 ORTHO05D009848 2.7e-51 206.5 247 45.3
Nitab4.5_0001578g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 4.7e-48 195.7 211 44.1
PGSC0003DMG401025397 Solanum tuberosum HOM05D007819 ORTHO05D009848 4.7e-48 195.7 153 55.6
Ciclev10029813m.g Citrus clementina HOM05D007819 ORTHO05D009848 7.5e-46 188.3 249 40.2
Nitab4.5_0000022g0250 Nicotiana tabacum HOM05D007819 ORTHO05D009848 6.3e-45 185.3 181 52.5
Prupe.6G093600 Prunus persica HOM05D007819 ORTHO05D009848 6.3e-45 185.3 182 47.8
Dinv32800 Davidia involucrata HOM05D007819 ORTHO05D009848 3.5e-43 179.5 188 45.2
Solyc06g005100.3 Solanum lycopersicum HOM05D007819 ORTHO05D009848 1.1e-41 174.5 174 45.4
CAN.G1171.1 Capsicum annuum HOM05D007819 ORTHO05D009848 1.5e-38 164.1 240 40.0
Pp3c3_24540 Physcomitrium patens HOM05D007819 ORTHO05D009848 5.9e-35 152.1 240 33.8
GSVIVG01025124001 Vitis vinifera HOM05D007819 ORTHO05D009848 7.8e-35 151.8 158 44.9
MSTRG.12613 Avicennia marina HOM05D007819 ORTHO05D009848 1.7e-34 150.6 156 48.1
Pp3c12_18930 Physcomitrium patens HOM05D000370 ORTHO05D009848 2.9e-34 149.8 244 32.0
Pp3c12_18938 Physcomitrium patens HOM05D000370 ORTHO05D009848 2.9e-34 149.8 244 32.0
Mapoly0088s0067 Marchantia polymorpha HOM05D000370 ORTHO05D001335 6.8e-31 138.7 261 29.5
AUR62025022 Chenopodium quinoa HOM05D007819 ORTHO05D009848 2.0e-30 137.1 147 47.6
SalBow3G4000 Salvia bowleyana HOM05D007819 ORTHO05D009848 3.2e-28 129.8 99 61.6
MSTRG.12612 Avicennia marina HOM05D007819 ORTHO05D009848 2.0e-27 127.1 97 58.8
CSS0001112 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 1.4e-23 114.4 97 56.7
CSS0025937 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 1.4e-23 114.4 97 56.7
Migut.O00707 Erythranthe guttata HOM05D007819 ORTHO05D009848 5.2e-23 112.5 130 41.5
QL01p036766 Quercus lobata HOM05D007819 ORTHO05D009848 5.2e-23 112.5 88 56.8
Os03g0287100 Oryza sativa ssp. japonica HOM05D007819 ORTHO05D009848 1.5e-22 110.9 104 48.1
EL10Ac9g22426 Beta vulgaris HOM05D007819 ORTHO05D009848 3.9e-18 96.3 129 36.4
EL10Ac9g22427 Beta vulgaris HOM05D007819 ORTHO05D009848 2.8e-16 90.1 117 42.7
FAN11G3664 Fragaria x ananassa HOM05D007819 ORTHO05D009848 5.2e-15 85.9 66 63.6
QL01p036758 Quercus lobata HOM05D007819 ORTHO05D009848 1.4e-12 77.8 55 58.2
Oeu012676.1 Olea europaea HOM05D007819 ORTHO05D009848 1.6e-08 64.3 40 65.0
AagrBONN_evm.TU.Sc2ySwM_117.2524 Anthoceros agrestis HOM05D007819 ORTHO05D009848 1.8e-07 60.8 53 49.1
CiPaw.09G094500 Carya illinoinensis HOM05D007819 ORTHO05D009848 4.4e-06 56.2 44 56.8


User provided reference genes

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