Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 4.1e-125 451.4 232 100.0
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.1e-44 183.3 172 50.6
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.1e-44 183.3 178 50.0
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 6.7e-43 178.3 173 49.1
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.4e-40 170.6 187 48.1
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.8e-40 170.2 173 46.8
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.4e-40 169.9 173 46.8
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 5.3e-40 168.7 197 43.1
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 9.0e-40 167.9 173 47.4
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.2e-39 167.5 172 45.9
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.2e-39 167.5 209 44.5
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.2e-39 167.5 236 44.5
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 2.0e-39 166.8 197 42.6
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 2.0e-39 166.8 197 42.6
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.4e-39 166.0 209 42.1
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 5.8e-39 165.2 173 45.1
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 5.8e-39 165.2 172 45.9
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 5.8e-39 165.2 172 45.9
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 7.6e-39 164.9 173 44.5
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.7e-38 163.7 173 44.5
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.7e-38 163.7 230 41.7
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.7e-38 163.7 240 38.3
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.7e-38 163.7 225 40.9
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 2.2e-38 163.3 216 40.3
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.9e-38 162.9 192 42.2
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 4.9e-38 162.2 177 46.9
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 4.9e-38 162.2 230 42.6
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 4.9e-38 162.2 205 42.0
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 6.4e-38 161.8 171 46.2
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 6.4e-38 161.8 216 40.7
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 6.4e-38 161.8 171 46.8
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 6.4e-38 161.8 208 40.9
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 6.4e-38 161.8 212 40.1
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 8.4e-38 161.4 216 40.7
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.1e-37 161.0 173 45.1
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.9e-37 160.2 211 40.8
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.9e-37 160.2 232 39.2
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.4e-37 159.8 173 46.2
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 3.2e-37 159.5 227 38.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 7.1e-37 158.3 219 39.3
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 7.1e-37 158.3 217 40.6
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 7.1e-37 158.3 217 40.6
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.1e-37 158.3 172 44.8
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 9.3e-37 157.9 216 40.3
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.2e-36 157.5 173 43.4
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.6e-36 157.1 214 42.1
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.1e-36 156.8 162 48.1
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 2.1e-36 156.8 218 42.7
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 2.1e-36 156.8 218 42.7
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.1e-36 156.8 216 39.8
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 2.1e-36 156.8 199 42.7
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 2.1e-36 156.8 231 42.4
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 2.7e-36 156.4 221 39.8
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 2.7e-36 156.4 190 44.7
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 3.5e-36 156.0 224 41.1
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 4.6e-36 155.6 221 39.4
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 6.0e-36 155.2 212 39.2
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 6.0e-36 155.2 232 39.7
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 6.0e-36 155.2 172 44.2
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 7.9e-36 154.8 187 42.8
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.0e-35 154.5 171 46.2
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.0e-35 154.5 230 37.0
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.0e-35 154.5 234 38.9
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.0e-35 154.5 167 47.3
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.3e-35 154.1 214 39.7
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.3e-35 154.1 172 44.2
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.3e-35 154.1 227 38.8
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.8e-35 153.7 210 41.9
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 2.3e-35 153.3 223 39.0
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.0e-35 152.9 171 43.9
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.0e-35 152.9 171 43.9
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 3.0e-35 152.9 230 38.7
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 3.0e-35 152.9 208 39.9
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.0e-35 152.9 214 39.3
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 3.9e-35 152.5 171 43.9
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 3.9e-35 152.5 184 43.5
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 3.9e-35 152.5 213 40.4
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.1e-35 152.1 172 43.6
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.1e-35 152.1 172 43.6
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 5.1e-35 152.1 168 45.8
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 5.1e-35 152.1 168 45.8
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 6.7e-35 151.8 168 45.8
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 6.7e-35 151.8 172 44.2
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 6.7e-35 151.8 212 40.6
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 8.7e-35 151.4 192 39.6
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 8.7e-35 151.4 202 40.1
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.1e-34 151.0 184 42.9
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.5e-34 150.6 216 38.9
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.5e-34 150.6 172 42.4
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 2.5e-34 149.8 199 38.7
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.5e-34 149.8 205 39.5
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 2.5e-34 149.8 217 38.7
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 4.3e-34 149.1 200 40.0
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 4.3e-34 149.1 171 43.3
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.4e-34 148.3 205 40.5
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.6e-33 147.1 232 39.2
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.6e-33 147.1 205 38.5
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 2.1e-33 146.7 219 38.8
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.1e-33 146.7 202 38.6
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.8e-33 146.4 212 36.8
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 2.8e-33 146.4 173 42.2
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 3.7e-33 146.0 228 38.2
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 3.7e-33 146.0 231 38.1
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 4.8e-33 145.6 202 38.1
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 6.2e-33 145.2 165 44.2
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 6.2e-33 145.2 235 37.4
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.1e-32 144.4 171 43.3
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.1e-32 144.4 210 39.0
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.4e-32 144.1 206 39.3
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.4e-32 144.1 187 40.1
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.4e-32 144.1 150 46.7
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.4e-32 144.1 147 46.3
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.4e-32 144.1 171 41.5
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.4e-32 144.1 171 42.7
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.4e-32 144.1 168 43.5
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.8e-32 143.7 237 37.6
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 2.4e-32 143.3 209 38.8
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 2.4e-32 143.3 171 40.4
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.1e-32 142.9 220 36.8
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 3.1e-32 142.9 171 39.2
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 6.9e-32 141.7 180 41.1
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 6.9e-32 141.7 179 43.6
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.2e-31 141.0 202 38.1
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 4.5e-31 139.0 237 34.6
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 7.6e-31 138.3 240 37.9
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.6e-31 138.3 146 45.9
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.3e-30 137.5 222 36.5
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.7e-30 137.1 227 37.4
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 3.8e-30 136.0 241 36.1
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 6.5e-30 135.2 182 40.1
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 6.5e-30 135.2 237 35.0
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.1e-29 134.4 171 40.9
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 2.5e-29 133.3 166 43.4
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 9.3e-29 131.3 167 39.5
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.3e-27 127.5 212 37.7
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.8e-27 127.1 219 36.5
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.9e-27 125.9 158 41.1
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 6.7e-27 125.2 164 37.2
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.9e-26 123.6 158 39.2
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.5e-26 123.2 206 36.9
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.5e-26 123.2 197 36.5
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 5.3e-24 115.5 109 50.5
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.5e-23 114.0 202 33.2
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.0e-22 111.3 209 31.1
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.9e-22 109.8 133 39.1
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.8e-22 109.4 117 48.7
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.5e-22 108.6 166 36.7
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.8e-19 100.5 193 33.7
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 6.7e-19 98.6 105 44.8
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 2.9e-14 83.2 170 30.6
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-12 77.8 76 48.7
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.3e-09 67.8 150 28.0


User provided reference genes

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