Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 1.0e-166 590.1 328 100.0
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 4.5e-53 212.6 208 54.3
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 6.5e-52 208.8 221 57.9
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 1.4e-51 207.6 286 42.0
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 1.4e-51 207.6 207 62.3
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 1.9e-51 207.2 221 56.6
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 1.9e-51 207.2 221 56.6
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 2.5e-51 206.8 208 51.4
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 4.2e-51 206.1 221 50.2
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 7.2e-51 205.3 248 54.4
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 7.2e-51 205.3 243 48.1
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 7.2e-51 205.3 225 48.0
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 9.4e-51 204.9 224 55.4
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 2.7e-50 203.4 283 50.2
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 3.6e-50 203.0 234 55.1
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 6.1e-50 202.2 234 55.1
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 6.1e-50 202.2 202 51.5
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 1.0e-49 201.4 221 55.7
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 1.4e-49 201.1 202 55.9
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.8e-49 200.7 217 49.3
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 2.3e-49 200.3 205 48.8
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 2.3e-49 200.3 214 55.1
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 3.0e-49 199.9 219 48.9
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 3.9e-49 199.5 201 53.7
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 3.9e-49 199.5 203 56.7
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 5.2e-49 199.1 222 48.6
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.2e-49 199.1 252 46.4
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 6.7e-49 198.7 205 56.1
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 6.7e-49 198.7 220 57.3
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 6.7e-49 198.7 269 43.9
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 6.7e-49 198.7 202 50.0
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 6.7e-49 198.7 247 48.2
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 8.8e-49 198.4 232 52.6
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 8.8e-49 198.4 202 50.5
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 8.8e-49 198.4 202 57.9
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 8.8e-49 198.4 247 49.8
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 1.1e-48 198.0 202 50.5
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 2.0e-48 197.2 215 60.0
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 2.0e-48 197.2 219 55.3
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 2.6e-48 196.8 222 54.1
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 3.3e-48 196.4 230 49.1
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 4.4e-48 196.1 207 56.5
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 5.7e-48 195.7 202 55.0
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 5.7e-48 195.7 202 59.4
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 5.7e-48 195.7 212 57.1
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.7e-48 195.7 189 53.4
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 7.4e-48 195.3 201 59.2
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 7.4e-48 195.3 262 44.3
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 9.7e-48 194.9 275 46.2
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 9.7e-48 194.9 198 50.5
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 1.3e-47 194.5 202 58.9
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 1.3e-47 194.5 202 59.4
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 1.7e-47 194.1 278 46.0
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 1.7e-47 194.1 215 58.6
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.7e-47 194.1 202 57.9
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 1.7e-47 194.1 219 48.9
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 1.7e-47 194.1 208 47.6
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 2.2e-47 193.7 202 58.9
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 2.2e-47 193.7 202 57.9
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 2.2e-47 193.7 278 46.0
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 2.8e-47 193.4 225 48.0
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 3.7e-47 193.0 202 58.9
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 4.8e-47 192.6 202 57.9
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.8e-47 192.6 202 57.9
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.8e-47 192.6 202 57.9
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 4.8e-47 192.6 202 58.4
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 4.8e-47 192.6 223 48.0
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 4.8e-47 192.6 224 47.3
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 1.1e-46 191.4 226 52.2
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.1e-46 191.4 278 46.0
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.1e-46 191.4 203 58.6
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 1.4e-46 191.0 284 47.9
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.8e-46 190.7 252 48.0
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 2.4e-46 190.3 235 51.9
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.1e-46 189.5 202 57.4
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 5.3e-46 189.1 280 46.1
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 7.0e-46 188.7 213 46.5
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 5.9e-45 185.7 266 41.7
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 5.9e-45 185.7 207 48.3
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 1.0e-44 184.9 219 54.3
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.7e-44 184.1 246 51.6
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 2.9e-44 183.3 208 52.4
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 3.8e-44 183.0 284 46.1
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 1.1e-43 181.4 228 43.4
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 1.5e-43 181.0 209 49.8
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 5.5e-43 179.1 259 44.0
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 1.6e-42 177.6 260 44.6
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 6.1e-42 175.6 145 59.3
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 8.0e-42 175.3 266 48.5
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 4.0e-41 172.9 234 46.2
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 1.2e-40 171.4 215 45.1
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 2.0e-40 170.6 201 48.3
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 4.4e-40 169.5 286 39.5
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 5.7e-40 169.1 145 57.9
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 5.7e-40 169.1 170 60.0
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 7.5e-40 168.7 245 38.0
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 9.7e-40 168.3 186 56.5
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.7e-39 167.5 266 40.2
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 4.8e-39 166.0 216 47.7
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 6.3e-39 165.6 223 44.8
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 4.1e-38 162.9 242 40.1
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.6e-37 161.0 245 37.6
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 2.7e-34 150.2 231 39.8
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 2.6e-32 143.7 116 58.6
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 5.7e-32 142.5 176 43.2
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 8.3e-31 138.7 206 49.5
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 3.1e-30 136.7 172 55.2
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 7.5e-24 115.5 137 44.5
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 7.5e-24 115.5 135 57.0
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.2e-23 114.0 145 44.8
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 4.4e-16 89.7 109 45.9
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 2.3e-12 77.4 71 53.5
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 5.6e-11 72.8 139 38.1
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 9.5e-11 72.0 139 38.1
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 6.2e-10 69.3 137 34.3
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.0e-09 68.6 136 34.6
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.4e-09 68.2 131 31.3
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.8e-09 65.9 174 29.9
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.2e-08 65.1 116 37.1
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 5.8e-08 62.8 112 34.8
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 9.8e-08 62.0 112 34.8
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 2.9e-07 60.5 112 35.7
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 3.7e-07 60.1 109 34.9
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.4e-06 57.4 110 31.8
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 3.2e-06 57.0 56 48.2
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 4.1e-06 56.6 112 34.8
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.1e-06 56.6 78 42.3


User provided reference genes

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