Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 0.0e+00 1453.3 735 100.0
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 8.0e-159 565.1 628 47.1
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 8.1e-119 432.2 492 46.1
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 5.3e-118 429.5 496 45.4
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 6.9e-118 429.1 499 46.1
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 7.6e-117 425.6 518 44.6
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 3.8e-116 423.3 508 44.1
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 6.4e-116 422.5 498 46.0
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 9.3e-115 418.7 504 45.6
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 1.2e-114 418.3 498 45.4
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.2e-114 418.3 500 44.4
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.7e-114 417.2 501 43.9
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 6.0e-114 416.0 498 45.4
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 7.8e-114 415.6 493 44.8
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 1.0e-113 415.2 497 45.3
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 1.7e-113 414.5 531 44.1
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 3.0e-113 413.7 508 44.1
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 3.0e-113 413.7 519 43.4
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 3.9e-113 413.3 523 43.6
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 5.1e-113 412.9 501 43.5
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 6.6e-113 412.5 510 43.5
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 1.9e-112 411.0 493 46.2
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 9.6e-112 408.7 493 44.2
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 3.6e-111 406.8 471 44.6
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 6.2e-111 406.0 494 44.9
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 8.1e-111 405.6 490 43.9
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 1.1e-110 405.2 524 43.3
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.1e-110 405.2 491 44.6
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 2.4e-110 404.1 508 45.3
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.4e-110 404.1 499 45.5
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 3.1e-110 403.7 494 43.9
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 1.2e-109 401.7 492 43.3
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 1.2e-109 401.7 504 43.3
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.0e-109 401.0 499 44.5
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 2.0e-109 401.0 545 41.8
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 4.5e-109 399.8 501 43.1
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 5.8e-109 399.4 517 42.2
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 5.8e-109 399.4 493 43.4
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 7.6e-109 399.1 514 42.6
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 9.9e-109 398.7 532 42.3
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 9.9e-109 398.7 497 43.5
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.3e-108 398.3 607 40.4
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 2.2e-108 397.5 485 44.9
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 2.2e-108 397.5 490 43.9
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 2.2e-108 397.5 498 44.8
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 6.4e-108 396.0 497 44.3
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 6.4e-108 396.0 548 42.3
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 1.9e-107 394.4 491 43.4
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 1.9e-107 394.4 491 43.2
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 3.2e-107 393.7 508 44.3
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 3.2e-107 393.7 492 42.9
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 3.2e-107 393.7 492 43.7
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 4.2e-107 393.3 494 43.7
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 4.2e-107 393.3 493 44.4
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 5.4e-107 392.9 493 43.6
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 5.4e-107 392.9 497 43.3
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 7.1e-107 392.5 518 41.1
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 9.3e-107 392.1 509 42.6
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.2e-106 391.7 519 43.5
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 1.6e-106 391.3 514 42.4
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.1e-106 391.0 516 42.6
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 2.1e-106 391.0 546 40.8
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 2.7e-106 390.6 503 42.1
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 8.7e-105 385.6 492 43.5
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 1.1e-104 385.2 505 42.8
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.1e-104 385.2 537 40.0
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 1.1e-104 385.2 502 41.8
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 1.1e-104 385.2 490 42.9
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 2.5e-104 384.0 494 43.1
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 4.3e-104 383.3 501 42.1
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 4.3e-104 383.3 502 41.8
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 4.3e-104 383.3 498 42.6
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 1.3e-103 381.7 469 43.1
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 1.6e-103 381.3 529 41.4
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.8e-103 380.6 498 41.6
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 8.1e-103 379.0 558 39.6
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 2.4e-102 377.5 495 42.2
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 3.1e-102 377.1 508 42.3
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 6.9e-102 375.9 528 41.5
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 2.6e-101 374.0 468 43.4
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 7.6e-101 372.5 546 40.3
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 1.3e-100 371.7 491 42.4
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 1.3e-100 371.7 491 42.8
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 1.1e-99 368.6 491 42.2
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 3.5e-98 363.6 488 42.0
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 4.6e-98 363.2 494 40.9
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.1e-96 358.6 493 41.2
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 1.3e-95 355.1 496 40.1
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.3e-95 355.1 509 39.7
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.6e-95 354.8 505 39.4
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 2.4e-94 350.9 452 42.0
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 3.1e-94 350.5 572 36.4
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 6.9e-94 349.4 484 39.7
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.1e-91 342.0 401 46.6
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 2.2e-87 327.8 418 43.3
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 4.1e-86 323.6 385 43.9
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 5.9e-85 319.7 503 36.2
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 2.9e-84 317.4 544 37.3
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 3.2e-83 313.9 489 39.9
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 1.8e-81 308.1 373 44.0
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 5.1e-81 306.6 505 36.6
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 3.3e-80 303.9 386 41.5
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 8.2e-79 299.3 436 41.1
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 2.5e-75 287.7 389 41.1
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 9.4e-75 285.8 346 44.2
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.0e-73 282.3 454 37.9
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 6.7e-73 279.6 338 45.6
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 1.4e-70 271.9 322 44.1
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 4.1e-70 270.4 322 44.4
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 2.6e-69 267.7 512 33.8
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 3.8e-68 263.8 519 36.2
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.7e-66 257.7 336 44.9
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 1.8e-65 255.0 496 34.3
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 3.7e-63 247.3 311 42.1
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 1.1e-62 245.7 311 42.4
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 3.1e-62 244.2 357 40.9
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 5.3e-62 243.4 334 41.3
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 8.0e-58 229.6 262 45.8
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 8.3e-55 219.5 336 37.5
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 6.1e-50 203.4 258 43.0
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 8.0e-50 203.0 263 40.3
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.3e-49 201.4 218 47.2
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 8.3e-47 193.0 252 43.3
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.3e-43 181.0 219 43.4
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.6e-40 171.4 216 44.0
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 3.5e-37 161.0 147 53.1
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 1.3e-31 142.5 142 47.2
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 5.4e-30 137.1 204 38.7
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 7.0e-30 136.7 130 50.8
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.0e-28 132.9 167 41.3
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 9.5e-27 126.3 170 41.2
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 8.6e-20 103.2 88 60.2
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.1e-18 98.6 88 55.7
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 2.0e-16 92.0 89 53.9
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 4.4e-16 90.9 114 44.7
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 9.9e-16 89.7 130 36.2
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 3.2e-14 84.7 88 53.4
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 1.6e-13 82.4 123 39.8
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 1.6e-13 82.4 74 54.1
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.0e-12 78.2 147 27.9
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 6.2e-10 70.5 77 53.2
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 1.2e-08 66.2 68 48.5
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 4.9e-07 60.8 116 36.2


User provided reference genes

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