Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 6.2e-132 474.2 246 100.0
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 6.1e-63 245.0 226 56.2
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 7.8e-58 228.0 226 55.3
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 1.0e-57 227.6 240 53.8
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.3e-57 227.3 229 54.6
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 1.3e-57 227.3 229 54.6
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 3.3e-56 222.6 231 52.4
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 4.3e-56 222.2 238 53.8
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 5.6e-56 221.9 226 54.4
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 5.6e-56 221.9 226 54.9
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 1.6e-55 220.3 226 52.7
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 3.6e-55 219.2 248 50.8
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 6.2e-55 218.4 243 51.9
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 6.2e-55 218.4 225 52.9
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 8.0e-55 218.0 241 50.2
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 8.0e-55 218.0 226 52.2
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 8.0e-55 218.0 249 49.4
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 1.0e-54 217.6 238 50.0
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 1.0e-54 217.6 233 50.6
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 1.0e-54 217.6 243 49.4
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 1.0e-54 217.6 243 49.4
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 1.0e-54 217.6 238 50.0
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 1.0e-54 217.6 238 50.0
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 1.0e-54 217.6 226 53.5
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 1.4e-54 217.2 226 51.8
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 1.4e-54 217.2 243 51.0
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 1.8e-54 216.9 226 53.1
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 3.1e-54 216.1 226 52.2
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 3.1e-54 216.1 243 49.4
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 3.1e-54 216.1 226 52.7
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 3.1e-54 216.1 226 53.5
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 4.0e-54 215.7 236 51.3
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 5.2e-54 215.3 244 50.0
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 5.2e-54 215.3 226 52.7
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 5.2e-54 215.3 240 48.8
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 5.2e-54 215.3 241 50.6
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 6.8e-54 214.9 226 52.2
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 6.8e-54 214.9 244 49.6
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 6.8e-54 214.9 226 53.1
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 8.9e-54 214.5 243 49.0
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 8.9e-54 214.5 243 49.4
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 1.2e-53 214.2 226 50.4
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 1.2e-53 214.2 226 52.2
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 1.2e-53 214.2 240 49.6
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 1.2e-53 214.2 226 51.3
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 1.2e-53 214.2 242 48.8
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.5e-53 213.8 236 51.7
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 1.5e-53 213.8 243 50.2
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 1.5e-53 213.8 226 52.2
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 2.0e-53 213.4 226 50.9
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 2.0e-53 213.4 241 50.6
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.0e-53 213.4 226 52.2
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 2.0e-53 213.4 226 51.3
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 2.0e-53 213.4 226 52.2
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 2.0e-53 213.4 226 51.3
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 3.4e-53 212.6 226 51.8
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 3.4e-53 212.6 226 50.9
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 3.4e-53 212.6 226 50.4
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 5.8e-53 211.8 226 51.8
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 5.8e-53 211.8 226 51.3
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 5.8e-53 211.8 243 49.4
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 7.5e-53 211.5 226 52.2
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 7.5e-53 211.5 240 49.6
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 9.8e-53 211.1 230 50.9
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 9.8e-53 211.1 228 51.3
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 9.8e-53 211.1 226 51.8
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 9.8e-53 211.1 226 51.3
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-52 210.7 238 50.0
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-52 210.7 238 50.0
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 1.3e-52 210.7 226 52.7
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 1.7e-52 210.3 226 51.3
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 1.7e-52 210.3 226 51.8
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 2.2e-52 209.9 243 48.1
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 2.2e-52 209.9 226 51.3
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 2.2e-52 209.9 248 48.4
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 2.9e-52 209.5 231 48.9
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 2.9e-52 209.5 226 53.5
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 4.9e-52 208.8 226 51.3
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 6.4e-52 208.4 226 50.9
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 1.4e-51 207.2 238 49.2
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 1.9e-51 206.8 226 52.2
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.2e-50 204.1 231 48.9
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 2.0e-50 203.4 226 49.6
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 4.6e-50 202.2 222 49.5
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 6.0e-50 201.8 226 49.1
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 3.0e-49 199.5 226 50.4
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 3.9e-49 199.1 226 48.2
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 8.1e-47 191.4 226 47.8
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 4.0e-46 189.1 220 47.7
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 7.5e-45 184.9 263 41.4
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 8.3e-44 181.4 217 47.0
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 2.7e-42 176.4 213 48.4
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 6.0e-42 175.3 226 46.5
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 3.9e-41 172.6 208 46.6
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 5.1e-41 172.2 205 46.3
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 2.8e-39 166.4 207 47.3
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 1.8e-38 163.7 200 48.0
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 1.2e-37 161.0 171 51.5
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 5.4e-35 152.1 199 45.2
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 1.2e-34 151.0 172 48.3
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 8.1e-31 138.3 151 53.0
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 2.6e-29 133.3 246 37.4
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 1.3e-28 131.0 261 37.5
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.7e-28 130.6 226 39.4
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 2.4e-27 126.7 226 36.7
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 7.1e-27 125.2 157 45.2
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 9.3e-27 124.8 170 45.3
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 4.3e-24 115.9 140 45.7
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 8.1e-23 111.7 226 35.0
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 3.1e-22 109.8 98 55.1
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 4.5e-21 105.9 226 32.7
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.6e-15 87.4 203 33.5
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 8.1e-15 85.1 202 31.7
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 1.8e-14 84.0 80 51.2
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 4.2e-11 72.8 55 58.2
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 3.9e-09 66.2 111 38.7
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 5.1e-09 65.9 210 31.9
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 4.8e-07 59.3 46 56.5


User provided reference genes

Program Settings