Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_1380 Physcomitrium patens HOM05D006484 ORTHO05D008002 8.6e-154 547.0 279 100.0
Mapoly0095s0016 Marchantia polymorpha HOM05D006484 ORTHO05D008002 1.6e-62 243.8 222 55.0
AagrBONN_evm.TU.Sc2ySwM_344.2636 Anthoceros agrestis HOM05D006484 ORTHO05D008002 5.9e-62 241.9 217 56.2
Hund05806 Selenicereus undatus HOM05D006484 ORTHO05D008002 7.5e-49 198.4 202 50.0
Os05g0526200 Oryza sativa ssp. japonica HOM05D006484 ORTHO05D008002 3.7e-48 196.1 201 48.8
MELO3C009955.2 Cucumis melo HOM05D006484 ORTHO05D008002 2.4e-47 193.4 201 49.3
CBR_g163 Chara braunii HOM05D006484 ORTHO05D008002 5.4e-47 192.2 227 44.1
arahy.Tifrunner.gnm1.ann1.ND36BV Arachis hypogaea HOM05D006484 ORTHO05D008002 7.0e-47 191.8 250 45.6
CsaV3_3G042410 Cucumis sativus L. HOM05D006484 ORTHO05D008002 7.0e-47 191.8 201 49.3
Duzib147G0204 Durio zibethinus HOM05D006484 ORTHO05D008002 9.1e-47 191.4 248 46.0
Sc10g0003790 Simmondsia chinensis HOM05D006484 ORTHO05D008002 9.1e-47 191.4 232 44.8
TWI56G0797 Tripterygium wilfordii HOM05D006484 ORTHO05D008002 9.1e-47 191.4 202 48.0
Manes.17G122200 Manihot esculenta HOM05D006484 ORTHO05D008002 1.2e-46 191.0 194 49.5
Sabra16G0230700 Salix brachista HOM05D006484 ORTHO05D008002 1.2e-46 191.0 209 49.3
THA.LOC104805398 Tarenaya hassleriana HOM05D006484 ORTHO05D008002 1.2e-46 191.0 208 48.1
arahy.Tifrunner.gnm1.ann1.J6NIZK Arachis hypogaea HOM05D006484 ORTHO05D008002 1.6e-46 190.7 248 44.4
QL02p076682 Quercus lobata HOM05D006484 ORTHO05D008002 1.6e-46 190.7 208 49.0
Cfa007430 Carpinus fangiana HOM05D006484 ORTHO05D008002 2.0e-46 190.3 201 48.8
Haze_14667 Corylus avellana HOM05D006484 ORTHO05D008002 2.0e-46 190.3 201 48.8
Potri.017G073000 Populus trichocarpa HOM05D006484 ORTHO05D008002 2.0e-46 190.3 216 47.2
CiPaw.03G037700 Carya illinoinensis HOM05D006484 ORTHO05D008002 2.7e-46 189.9 193 52.3
MD17G1035000 Malus domestica HOM05D006484 ORTHO05D008002 2.7e-46 189.9 241 42.3
SMO165G0092 Selaginella moellendorffii HOM05D006484 ORTHO05D008002 3.5e-46 189.5 196 51.0
ClCG10G014230 Citrullus lanatus HOM05D006484 ORTHO05D008002 4.5e-46 189.1 204 48.5
MBI16_g26453_MAGBIO Magnolia biondii HOM05D006484 ORTHO05D008002 4.5e-46 189.1 246 45.5
BcaB02g08436 Brassica carinata HOM05D006484 ORTHO05D008002 5.9e-46 188.7 208 46.6
A09p48180 Brassica napus HOM05D006484 ORTHO05D008002 5.9e-46 188.7 202 47.0
Prupe.3G283800 Prunus persica HOM05D006484 ORTHO05D008002 7.7e-46 188.3 201 48.3
FvH4_6g50620 Fragaria vesca HOM05D006484 ORTHO05D008002 1.0e-45 188.0 215 47.4
BcaC02g09737 Brassica carinata HOM05D006484 ORTHO05D008002 1.3e-45 187.6 208 46.6
A04p04700 Brassica napus HOM05D006484 ORTHO05D008002 1.3e-45 187.6 208 46.6
C04p37040 Brassica napus HOM05D006484 ORTHO05D008002 1.3e-45 187.6 208 46.6
BolC4t25282H Brassica oleracea HOM05D006484 ORTHO05D008002 1.3e-45 187.6 208 46.6
BraA04t16182Z Brassica rapa HOM05D006484 ORTHO05D008002 1.3e-45 187.6 208 46.6
BraA09t40274Z Brassica rapa HOM05D006484 ORTHO05D008002 1.3e-45 187.6 202 47.0
FAN02G1518 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.3e-45 187.6 215 47.4
Sed0007993 Sechium edule HOM05D006484 ORTHO05D008002 1.3e-45 187.6 218 46.3
TPR.G2295 Trifolium pratense HOM05D006484 ORTHO05D008002 1.3e-45 187.6 199 49.2
Ciclev10016148m.g Citrus clementina HOM05D006484 ORTHO05D008002 1.7e-45 187.2 230 45.7
Nitab4.5_0003337g0080 Nicotiana tabacum HOM05D006484 ORTHO05D008002 1.7e-45 187.2 218 43.6
Nitab4.5_0005176g0030 Nicotiana tabacum HOM05D006484 ORTHO05D008002 1.7e-45 187.2 218 43.6
RcHm_v2.0_Chr2g0171411 Rosa chinensis HOM05D006484 ORTHO05D008002 1.7e-45 187.2 216 47.2
FAN14G3872 Fragaria x ananassa HOM05D006484 ORTHO05D008002 2.3e-45 186.8 215 47.0
SalBow7G4444 Salvia bowleyana HOM05D006484 ORTHO05D008002 2.9e-45 186.4 202 46.5
C08p30440 Brassica napus HOM05D006484 ORTHO05D008002 3.8e-45 186.0 202 46.5
Hma1.2p1_0802F.1_g220370 Hydrangea macrophylla HOM05D006484 ORTHO05D008002 3.8e-45 186.0 193 48.7
Thecc.04G008700 Theobroma cacao HOM05D006484 ORTHO05D008002 3.8e-45 186.0 193 48.7
ATR0730G086 Amborella trichopoda HOM05D006484 ORTHO05D008002 5.0e-45 185.7 207 48.3
BcaC07g39842 Brassica carinata HOM05D006484 ORTHO05D008002 5.0e-45 185.7 202 46.5
Solyc02g086890.3 Solanum lycopersicum HOM05D006484 ORTHO05D008002 5.0e-45 185.7 193 46.1
CANSAT64G2071 Cannabis sativa HOM05D006484 ORTHO05D008002 6.5e-45 185.3 193 47.2
Gohir.D11G071200 Gossypium hirsutum HOM05D006484 ORTHO05D008002 6.5e-45 185.3 193 49.7
Gorai.007G076500 Gossypium raimondii HOM05D006484 ORTHO05D008002 6.5e-45 185.3 193 49.7
Lsat_1_v5_gn_0_26201 Lactuca sativa HOM05D006484 ORTHO05D008002 6.5e-45 185.3 220 45.9
SGA_v2.0_scaffold30G12470 Striga asiatica HOM05D006484 ORTHO05D008002 6.5e-45 185.3 193 47.7
Thhalv10010599m.g Eutrema salsugineum HOM05D006484 ORTHO05D008002 1.1e-44 184.5 204 47.1
Gohir.A11G067300 Gossypium hirsutum HOM05D006484 ORTHO05D008002 1.1e-44 184.5 217 46.5
Cc07_g02300 Coffea canephora HOM05D006484 ORTHO05D008002 1.5e-44 184.1 189 48.7
Sopen02g031660 Solanum pennellii HOM05D006484 ORTHO05D008002 1.5e-44 184.1 193 45.6
BolC8t50667H Brassica oleracea HOM05D006484 ORTHO05D008002 1.9e-44 183.7 202 46.0
CSS0043741 Camellia sinensis var. sinensis HOM05D006484 ORTHO05D008002 2.5e-44 183.3 225 46.7
TAR629G1796 Trochodendron aralioides HOM05D006484 ORTHO05D008002 3.2e-44 183.0 201 48.3
GSVIVG01032484001 Vitis vinifera HOM05D006484 ORTHO05D008002 3.2e-44 183.0 186 50.0
Ca_04198_v3 Cicer arietinum L. HOM05D006484 ORTHO05D008002 4.2e-44 182.6 190 49.5
Glyma.13G169000 Glycine max HOM05D006484 ORTHO05D008002 7.2e-44 181.8 267 41.6
COL.COLO4_28946 Corchorus olitorius HOM05D006484 ORTHO05D008002 9.5e-44 181.4 216 45.4
PGR142G1659 Punica granatum HOM05D006484 ORTHO05D008002 9.5e-44 181.4 211 46.0
FAN09G0334 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.2e-43 181.0 223 45.7
Migut.K01368 Erythranthe guttata HOM05D006484 ORTHO05D008002 1.6e-43 180.6 206 45.1
Psat1g058640 Pisum sativum HOM05D006484 ORTHO05D008002 1.6e-43 180.6 193 49.2
Rhsim08G0055200 Rhododendron simsii HOM05D006484 ORTHO05D008002 1.6e-43 180.6 208 48.1
Sp5g07210 Schrenkiella parvula HOM05D006484 ORTHO05D008002 1.6e-43 180.6 193 46.6
CARHR165250 Cardamine hirsuta HOM05D006484 ORTHO05D008002 2.1e-43 180.3 204 46.1
PGSC0003DMG401000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 2.8e-43 179.9 213 43.2
PGSC0003DMG402000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 2.8e-43 179.9 213 43.2
Peaxi162Scf00129g00106 Petunia axillaris HOM05D006484 ORTHO05D008002 3.6e-43 179.5 215 41.9
Glyma.19G009200 Glycine max HOM05D006484 ORTHO05D008002 4.7e-43 179.1 208 45.7
Medtr6g007180 Medicago truncatula HOM05D006484 ORTHO05D008002 6.1e-43 178.7 194 48.5
HanXRQChr15g0474541 Helianthus annuus HOM05D006484 ORTHO05D008002 8.0e-43 178.3 216 44.9
Lalb_Chr21g0319431 Lupinus albus HOM05D006484 ORTHO05D008002 1.0e-42 177.9 186 46.8
AL5G36370 Arabidopsis lyrata HOM05D006484 ORTHO05D008002 1.4e-42 177.6 255 41.6
EL10Ac6g14629 Beta vulgaris HOM05D006484 ORTHO05D008002 1.4e-42 177.6 196 45.4
Lj2g0018435 Lotus japonicus HOM05D006484 ORTHO05D008002 1.8e-42 177.2 239 41.0
AT3G55250 Arabidopsis thaliana HOM05D006484 ORTHO05D008002 2.3e-42 176.8 257 41.6
MSTRG.15510 Avicennia marina HOM05D006484 ORTHO05D008002 2.3e-42 176.8 193 46.6
Carub.0005s2191 Capsella rubella HOM05D006484 ORTHO05D008002 3.0e-42 176.4 204 45.6
Eucgr.I01814 Eucalyptus grandis HOM05D006484 ORTHO05D008002 4.0e-42 176.0 190 48.4
CDE05G1394 Ceratophyllum demersum HOM05D001719 ORTHO05D008883 5.2e-42 175.6 181 49.2
Dinv33496 Davidia involucrata HOM05D006484 ORTHO05D008002 6.8e-42 175.3 220 45.5
ECA246G1918 Erigeron canadensis HOM05D006484 ORTHO05D008002 1.2e-41 174.5 196 45.4
FAN05G1767 Fragaria x ananassa HOM05D006484 ORTHO05D008002 2.0e-41 173.7 249 41.4
Lj7A591T78 Lonicera japonica HOM05D006484 ORTHO05D008002 3.4e-41 172.9 193 46.1
PSO832G1464 Papaver somniferum HOM05D006484 ORTHO05D008002 5.7e-41 172.2 194 48.5
Phvul.004G016700 Phaseolus vulgaris HOM05D006484 ORTHO05D008002 7.5e-41 171.8 193 45.6
unitig_88.g27777 Utricularia gibba HOM05D000190 ORTHO05D000113 9.8e-41 171.4 202 44.6
VMungo0464G2075 Vigna mungo HOM05D006484 ORTHO05D008002 1.3e-40 171.0 208 44.2
Ah.02g127510 Amaranthus hybridus HOM05D006484 ORTHO05D008002 1.7e-40 170.6 189 46.0
Aa31LG10G9850 Aethionema arabicum HOM05D006484 ORTHO05D008002 3.1e-39 166.4 218 42.7
Aqoxy3G01007 Aquilegia oxysepala HOM05D006484 ORTHO05D008002 3.1e-39 166.4 203 41.4
PSO063G6163 Papaver somniferum HOM05D006484 ORTHO05D008002 4.1e-39 166.0 208 45.7
DCAR_021681 Daucus carota HOM05D006484 ORTHO05D008002 5.9e-38 162.2 236 40.3
HPP92_024318 Vanilla planifolia HOM05D006484 ORTHO05D008002 1.3e-37 161.0 206 43.7
Actinidia35740 Actinidia chinensis HOM05D006484 ORTHO05D008002 1.9e-36 157.1 165 49.7
BcaB01g00117 Brassica carinata HOM05D006484 ORTHO05D008002 3.7e-32 142.9 202 40.1
Nn4g22800 Nelumbo nucifera HOM05D006484 ORTHO05D008002 3.7e-32 142.9 246 38.6
Cpa.g.sc39.92 Carica papaya HOM05D006484 ORTHO05D008002 5.4e-31 139.0 141 48.2
BolC3t16636H Brassica oleracea HOM05D006484 ORTHO05D008002 1.3e-29 134.4 137 48.2
Zm00001eb215070 Zea mays HOM05D006484 ORTHO05D008002 1.9e-28 130.6 136 47.1
AUR62007841 Chenopodium quinoa HOM05D006484 ORTHO05D008002 9.8e-25 118.2 196 38.3
BolC7t43763H Brassica oleracea HOM05D006484 ORTHO05D008002 9.2e-23 111.7 157 38.9
vmacro18241 Vaccinium macrocarpon HOM05D006484 ORTHO05D008002 8.6e-21 105.1 221 34.8
HPP92_024280 Vanilla planifolia HOM05D006484 ORTHO05D008002 1.6e-19 100.9 132 43.9
Cre03.g183400 Chlamydomonas reinhardtii HOM05D006484 ORTHO05D008002 7.5e-17 92.0 184 34.2
Atru.chr6.2293 Acer truncatum HOM05D006484 ORTHO05D008002 2.4e-15 87.0 82 50.0
CAN.G685.18 Capsicum annuum HOM05D006484 ORTHO05D008002 2.4e-15 87.0 91 47.3
AUR62003035 Chenopodium quinoa HOM05D006484 ORTHO05D008002 3.2e-15 86.7 164 35.4
CAN.G473.120 Capsicum annuum HOM05D006484 ORTHO05D008002 5.6e-12 75.9 115 35.7
BcaC06g34142 Brassica carinata HOM05D006484 ORTHO05D008002 1.8e-10 70.9 76 46.1
MD09G1034600 Malus domestica HOM05D006484 ORTHO05D000001 1.2e-09 68.2 107 38.3
arahy.Tifrunner.gnm1.ann1.QWBN9A Arachis hypogaea HOM05D006484 ORTHO05D008002 6.0e-06 55.8 46 52.2


User provided reference genes

Program Settings