Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.5e-119 433.0 231 100.0
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 6.3e-110 401.0 231 93.9
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 1.7e-70 270.0 240 62.5
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 3.7e-54 215.7 192 57.8
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 8.9e-48 194.5 200 47.0
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 1.5e-47 193.7 223 46.2
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 5.8e-47 191.8 226 44.7
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 5.8e-47 191.8 226 44.7
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 1.3e-46 190.7 230 46.1
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 4.9e-46 188.7 157 60.5
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 1.4e-45 187.2 221 45.2
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 3.2e-45 186.0 200 46.5
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.4e-45 185.3 200 45.0
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 7.1e-45 184.9 230 44.3
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 1.2e-44 184.1 198 47.0
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 1.6e-44 183.7 200 45.5
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 2.7e-44 183.0 200 45.5
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 4.6e-44 182.2 201 45.3
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 6.0e-44 181.8 224 45.1
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 6.0e-44 181.8 200 47.0
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 1.0e-43 181.0 200 47.0
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 1.0e-43 181.0 231 44.6
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 1.0e-43 181.0 198 46.5
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.7e-43 180.3 230 41.7
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 2.3e-43 179.9 200 44.0
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 2.3e-43 179.9 200 44.5
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 3.0e-43 179.5 190 46.8
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 3.0e-43 179.5 224 44.2
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 3.9e-43 179.1 200 46.0
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 5.1e-43 178.7 190 46.8
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 5.1e-43 178.7 200 46.5
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 5.1e-43 178.7 207 44.4
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 8.7e-43 177.9 200 46.0
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 8.7e-43 177.9 194 45.4
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 8.7e-43 177.9 200 46.5
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 1.1e-42 177.6 219 45.7
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.1e-42 177.6 228 42.1
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.1e-42 177.6 198 46.5
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.5e-42 177.2 190 46.3
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 1.5e-42 177.2 200 44.5
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 1.5e-42 177.2 227 41.4
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 1.5e-42 177.2 200 44.5
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.5e-42 177.2 200 44.5
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 1.9e-42 176.8 227 41.9
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 1.9e-42 176.8 204 43.1
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 1.9e-42 176.8 224 43.3
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 3.3e-42 176.0 186 47.3
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 4.3e-42 175.6 233 42.9
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 4.3e-42 175.6 198 45.5
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 4.3e-42 175.6 200 43.5
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 5.6e-42 175.3 200 44.0
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 7.3e-42 174.9 202 42.6
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 7.3e-42 174.9 190 45.8
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 7.3e-42 174.9 235 43.0
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 9.6e-42 174.5 184 46.7
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 9.6e-42 174.5 200 44.0
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 1.2e-41 174.1 200 45.0
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.1e-41 173.3 235 41.3
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 2.1e-41 173.3 237 40.1
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 2.1e-41 173.3 224 42.9
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 2.8e-41 172.9 200 46.0
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.8e-41 172.9 201 43.8
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 2.8e-41 172.9 190 46.8
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 3.6e-41 172.6 186 47.3
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.6e-41 172.6 200 44.0
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 3.6e-41 172.6 187 46.0
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 3.6e-41 172.6 202 42.1
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 3.6e-41 172.6 200 45.0
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 4.7e-41 172.2 200 44.0
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 4.7e-41 172.2 200 44.0
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 4.7e-41 172.2 202 42.1
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 6.2e-41 171.8 230 40.0
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 6.2e-41 171.8 200 43.5
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 6.2e-41 171.8 202 41.6
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 6.2e-41 171.8 211 43.6
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 8.1e-41 171.4 200 44.0
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 8.1e-41 171.4 229 40.6
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 8.1e-41 171.4 229 40.6
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 1.1e-40 171.0 200 44.0
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.1e-40 171.0 228 39.9
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 1.4e-40 170.6 200 44.5
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 1.4e-40 170.6 230 40.9
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 1.8e-40 170.2 215 41.9
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 1.8e-40 170.2 233 40.8
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 2.4e-40 169.9 200 44.0
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 3.1e-40 169.5 202 42.1
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 3.1e-40 169.5 203 41.9
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 4.0e-40 169.1 200 42.5
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 4.0e-40 169.1 203 42.4
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 4.0e-40 169.1 201 43.3
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 5.3e-40 168.7 201 42.3
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 5.3e-40 168.7 206 41.3
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 6.9e-40 168.3 230 38.7
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 9.0e-40 167.9 207 44.4
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 9.0e-40 167.9 217 41.9
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 1.2e-39 167.5 198 42.9
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 1.2e-39 167.5 186 44.6
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 1.5e-39 167.2 204 40.7
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 1.5e-39 167.2 206 40.3
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 1.5e-39 167.2 204 40.7
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 1.5e-39 167.2 206 40.3
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 1.5e-39 167.2 220 39.1
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 1.5e-39 167.2 220 39.1
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 2.0e-39 166.8 233 37.8
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 2.0e-39 166.8 231 41.6
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 2.6e-39 166.4 221 38.9
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 2.6e-39 166.4 209 40.2
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 2.6e-39 166.4 220 39.1
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 2.6e-39 166.4 220 39.1
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 2.6e-39 166.4 233 37.3
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 2.6e-39 166.4 216 40.3
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 2.6e-39 166.4 213 42.3
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 3.4e-39 166.0 186 44.6
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 3.4e-39 166.0 202 41.6
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 3.4e-39 166.0 230 39.6
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 3.4e-39 166.0 203 41.4
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 3.4e-39 166.0 240 37.9
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 4.4e-39 165.6 203 43.3
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 9.9e-39 164.5 207 42.0
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 9.9e-39 164.5 213 40.8
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 1.3e-38 164.1 229 37.6
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 1.3e-38 164.1 229 37.6
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 2.2e-38 163.3 200 42.5
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 2.9e-38 162.9 213 40.4
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 3.8e-38 162.5 229 38.9
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 4.9e-38 162.2 219 41.1
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 4.9e-38 162.2 200 42.5
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 6.4e-38 161.8 186 44.6
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 6.4e-38 161.8 233 37.3
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 8.4e-38 161.4 203 40.4
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 1.9e-37 160.2 230 39.6
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 2.4e-37 159.8 229 36.7
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 2.4e-37 159.8 230 40.9
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 5.4e-37 158.7 229 38.0
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 7.1e-37 158.3 198 40.9
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 3.5e-36 156.0 188 43.1
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 4.6e-36 155.6 189 41.3
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 1.0e-35 154.5 212 39.2
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.0e-35 154.5 188 42.6
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.3e-35 154.1 188 43.1
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.0e-35 152.9 188 42.6
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 2.5e-34 149.8 199 43.2
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 4.8e-33 145.6 212 37.7
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 1.1e-32 144.4 194 38.1
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 1.4e-32 144.1 248 36.7
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 2.0e-31 140.2 186 38.2
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 1.1e-29 134.4 185 38.4
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 1.1e-29 134.4 345 29.9
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.2e-29 132.9 193 40.4
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.1e-28 130.2 294 30.3
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 3.5e-28 129.4 188 39.9
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 9.6e-26 121.3 232 34.9
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 1.6e-25 120.6 116 50.0
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 2.1e-25 120.2 116 50.9
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 3.1e-24 116.3 142 40.8
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 3.4e-23 112.8 160 40.0
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.8e-23 112.1 258 31.8
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 5.5e-21 105.5 191 35.1
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 1.6e-20 104.0 228 29.4
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 3.3e-18 96.3 198 30.3
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 2.1e-17 93.6 104 45.2
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 6.9e-16 88.6 139 36.0
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 5.8e-15 85.5 153 35.3
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 1.1e-13 81.3 127 39.4
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.9e-13 80.5 98 40.8
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.1e-10 71.2 70 48.6
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.5e-10 70.9 74 45.9
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.3e-10 69.7 70 45.7
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.7e-10 68.9 70 45.7
MCO11G452 Micromonas commoda HOM05D003160 ORTHO05D005967 1.6e-09 67.4 198 25.8
MELO3C025005.2 Cucumis melo HOM05D003160 ORTHO05D005967 9.0e-08 61.6 178 25.3
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.2e-07 61.2 79 38.0
Sed0000690 Sechium edule HOM05D003160 ORTHO05D005967 1.2e-07 61.2 178 25.8
SMO013G0019 Selaginella moellendorffii HOM05D003160 ORTHO05D005967 2.0e-07 60.5 178 27.0
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 4.5e-07 59.3 69 39.1
arahy.Tifrunner.gnm1.ann1.2I1I1C Arachis hypogaea HOM05D003160 ORTHO05D005967 1.0e-06 58.2 178 24.7
Phvul.003G211100 Phaseolus vulgaris HOM05D003160 ORTHO05D005967 1.7e-06 57.4 178 25.3
Glyma.17G130100 Glycine max HOM05D003160 ORTHO05D005967 3.8e-06 56.2 173 24.3
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 6.5e-06 55.5 69 40.6
Mapoly0006s0050 Marchantia polymorpha HOM05D003160 ORTHO05D005967 6.5e-06 55.5 230 26.5
THA.LOC104816203 Tarenaya hassleriana HOM05D003160 ORTHO05D005967 6.5e-06 55.5 178 23.6
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 8.5e-06 55.1 80 35.0


User provided reference genes

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