Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 4.6e-121 438.0 227 100.0
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 6.3e-54 214.9 198 56.1
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 3.6e-49 199.1 195 54.9
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 7.0e-45 184.9 186 51.6
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 6.5e-43 178.3 198 46.5
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 1.1e-42 177.6 173 48.0
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 4.5e-36 155.6 182 42.3
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 1.0e-35 154.5 181 45.3
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 3.8e-35 152.5 181 44.8
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 3.8e-35 152.5 186 46.2
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 8.5e-35 151.4 183 45.9
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 1.1e-34 151.0 183 43.2
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 2.5e-34 149.8 182 44.0
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 3.2e-34 149.4 181 44.8
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 3.2e-34 149.4 194 44.8
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 3.2e-34 149.4 181 43.6
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 3.2e-34 149.4 181 42.5
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 4.2e-34 149.1 194 44.8
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 4.2e-34 149.1 181 45.3
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 4.2e-34 149.1 181 45.3
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 4.2e-34 149.1 181 42.0
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 5.5e-34 148.7 181 45.3
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 5.5e-34 148.7 184 42.9
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 7.2e-34 148.3 181 43.6
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 9.4e-34 147.9 181 42.5
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 9.4e-34 147.9 181 45.3
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 1.2e-33 147.5 183 44.3
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 1.2e-33 147.5 183 44.3
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 1.2e-33 147.5 186 45.7
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 1.2e-33 147.5 182 44.0
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 1.6e-33 147.1 181 43.1
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 2.7e-33 146.4 181 44.2
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 2.7e-33 146.4 197 43.1
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 4.7e-33 145.6 181 43.6
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 4.7e-33 145.6 181 43.6
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 4.7e-33 145.6 181 43.6
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 4.7e-33 145.6 181 42.0
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 4.7e-33 145.6 172 42.4
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 4.7e-33 145.6 196 41.8
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 6.1e-33 145.2 181 42.0
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 6.1e-33 145.2 181 43.1
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 6.1e-33 145.2 181 42.0
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 8.0e-33 144.8 181 43.1
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 1.0e-32 144.4 181 42.5
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 1.0e-32 144.4 181 43.6
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.4e-32 144.1 181 43.1
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.4e-32 144.1 181 42.5
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 1.4e-32 144.1 181 41.4
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 1.8e-32 143.7 159 44.7
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 2.3e-32 143.3 181 43.1
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 2.3e-32 143.3 181 43.1
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.3e-32 143.3 185 41.1
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 2.3e-32 143.3 203 41.4
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 3.0e-32 142.9 182 43.4
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 3.0e-32 142.9 177 40.7
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 4.0e-32 142.5 182 44.0
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 4.0e-32 142.5 181 41.4
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 5.2e-32 142.1 181 42.0
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 5.2e-32 142.1 181 43.6
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 5.2e-32 142.1 181 41.4
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 5.2e-32 142.1 194 42.8
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 6.8e-32 141.7 181 42.0
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 6.8e-32 141.7 182 43.4
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 6.8e-32 141.7 181 41.4
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 6.8e-32 141.7 182 42.3
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 8.8e-32 141.4 181 43.1
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 8.8e-32 141.4 181 42.0
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 8.8e-32 141.4 161 42.9
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 1.2e-31 141.0 181 42.5
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 1.2e-31 141.0 191 39.8
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 2.0e-31 140.2 194 41.8
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 2.0e-31 140.2 182 43.4
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 2.6e-31 139.8 181 41.4
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 3.4e-31 139.4 210 36.7
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 3.4e-31 139.4 181 42.5
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 3.4e-31 139.4 181 42.5
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 4.4e-31 139.0 182 42.9
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 4.4e-31 139.0 181 42.0
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 4.4e-31 139.0 183 40.4
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 9.8e-31 137.9 183 41.0
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 1.3e-30 137.5 181 39.8
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 1.7e-30 137.1 181 39.8
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 1.7e-30 137.1 213 36.2
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 4.8e-30 135.6 181 41.4
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 6.3e-30 135.2 191 37.7
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 1.1e-29 134.4 181 40.3
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 1.4e-29 134.0 183 37.7
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 1.4e-29 134.0 183 39.9
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 1.8e-29 133.7 169 43.8
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 2.4e-29 133.3 181 39.8
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 3.1e-29 132.9 181 38.7
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 7.0e-29 131.7 182 41.2
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 9.1e-29 131.3 180 38.9
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 9.1e-29 131.3 164 42.1
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 2.0e-28 130.2 181 41.4
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 2.0e-28 130.2 181 40.3
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 2.7e-28 129.8 181 38.7
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 3.5e-28 129.4 184 40.2
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 4.5e-28 129.0 181 37.6
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 5.9e-28 128.6 176 42.0
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 5.9e-28 128.6 182 35.7
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 1.7e-27 127.1 176 37.5
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 8.5e-27 124.8 187 39.0
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.1e-26 124.4 198 38.4
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 1.1e-26 124.4 181 37.6
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.9e-26 123.6 185 37.8
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 2.0e-23 113.6 160 39.4
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 4.4e-23 112.5 159 37.7
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 7.5e-23 111.7 181 37.0
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.4e-21 107.5 187 35.3
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 3.1e-21 106.3 197 33.5
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 9.1e-21 104.8 193 32.6
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.0e-20 103.6 147 41.5
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 2.7e-20 103.2 145 37.9
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 5.9e-20 102.1 192 32.8
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 5.9e-20 102.1 119 42.0
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 2.9e-19 99.8 135 43.0
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 3.3e-18 96.3 104 47.1
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 1.1e-13 81.3 108 41.7
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.4e-13 80.9 81 49.4
Mapoly0114s0002 Marchantia polymorpha HOM05D003111 ORTHO05D003502 1.2e-12 77.8 175 29.1
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 2.3e-11 73.6 90 41.1
AagrBONN_evm.TU.Sc2ySwM_344.1359 Anthoceros agrestis HOM05D003111 ORTHO05D003502 1.1e-10 71.2 176 26.7
HPP92_019617 Vanilla planifolia HOM05D003111 ORTHO05D003502 3.6e-09 66.2 177 24.9
HPP92_019623 Vanilla planifolia HOM05D003111 ORTHO05D003502 6.2e-09 65.5 125 29.6
DCAR_016220 Daucus carota HOM05D003111 ORTHO05D003502 1.8e-08 63.9 132 26.5
Lj5C60T4 Lonicera japonica HOM05D003111 ORTHO05D003502 2.3e-08 63.5 129 24.8
Nn8g39209 Nelumbo nucifera HOM05D003111 ORTHO05D003502 4.0e-08 62.8 141 24.8
EL10Ac8g18506 Beta vulgaris HOM05D003111 ORTHO05D003502 6.8e-08 62.0 173 19.7
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 6.8e-08 62.0 90 36.7
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 6.8e-08 62.0 72 44.4
HanXRQChr14g0456011 Helianthus annuus HOM05D003111 ORTHO05D003502 8.9e-08 61.6 141 27.7
MSTRG.9457 Avicennia marina HOM05D003111 ORTHO05D003502 1.2e-07 61.2 176 25.0
Hma1.2p1_0092F.1_g046660 Hydrangea macrophylla HOM05D003111 ORTHO05D003502 1.2e-07 61.2 129 25.6
Eucgr.F03017 Eucalyptus grandis HOM05D003111 ORTHO05D003502 1.5e-07 60.8 153 23.5
GSVIVG01015401001 Vitis vinifera HOM05D003111 ORTHO05D003502 3.4e-07 59.7 166 23.5
Mapoly0005s0222 Marchantia polymorpha HOM05D000172 ORTHO05D000273 4.4e-07 59.3 140 29.3
Ciclev10026444m.g Citrus clementina HOM05D003111 ORTHO05D003502 5.8e-07 58.9 160 21.2
Lj3g0007717 Lotus japonicus HOM05D003111 ORTHO05D003502 5.8e-07 58.9 159 22.0
Cpa.g.sc68.12 Carica papaya HOM05D003111 ORTHO05D003502 7.5e-07 58.5 132 22.7
PSO782G1457 Papaver somniferum HOM05D003111 ORTHO05D003502 7.5e-07 58.5 128 27.3
SGA_v2.0_scaffold5G02583 Striga asiatica HOM05D003111 ORTHO05D003502 7.5e-07 58.5 154 27.9
Oeu028156.1 Olea europaea HOM05D003111 ORTHO05D003502 9.8e-07 58.2 163 24.5
Oeu033488.1 Olea europaea HOM05D003111 ORTHO05D003502 9.8e-07 58.2 129 26.4
Sc12g0009300 Simmondsia chinensis HOM05D003111 ORTHO05D003502 9.8e-07 58.2 129 26.4
TWI34G0805 Tripterygium wilfordii HOM05D003111 ORTHO05D003502 9.8e-07 58.2 152 23.7
Aa31sc99G30 Aethionema arabicum HOM05D003111 ORTHO05D003502 1.3e-06 57.8 123 29.3
SalBow2G0718 Salvia bowleyana HOM05D003111 ORTHO05D003502 1.3e-06 57.8 129 26.4
Cfa015758 Carpinus fangiana HOM05D000012 ORTHO05D001372 1.7e-06 57.4 172 19.2
SGA_v2.0_scaffold4G01998 Striga asiatica HOM05D003111 ORTHO05D003502 1.7e-06 57.4 128 26.6
PSO063G2693 Papaver somniferum HOM05D003111 ORTHO05D003502 2.2e-06 57.0 128 27.3
Prupe.3G070600 Prunus persica HOM05D003111 ORTHO05D003502 2.2e-06 57.0 158 21.5
THA.LOC104817997 Tarenaya hassleriana HOM05D003111 ORTHO05D003502 2.2e-06 57.0 151 21.9
CARHR042460 Cardamine hirsuta HOM05D003111 ORTHO05D003502 2.9e-06 56.6 151 22.5
Migut.I00870 Erythranthe guttata HOM05D003111 ORTHO05D003502 2.9e-06 56.6 129 27.1
Lsat_1_v5_gn_5_130241 Lactuca sativa HOM05D003111 ORTHO05D003502 2.9e-06 56.6 129 26.4
HanXRQChr10g0313371 Helianthus annuus HOM05D003111 ORTHO05D003502 3.7e-06 56.2 160 23.8
arahy.Tifrunner.gnm1.ann1.IA5R8C Arachis hypogaea HOM05D003111 ORTHO05D003502 4.9e-06 55.8 127 22.8
arahy.Tifrunner.gnm1.ann1.TT0KBN Arachis hypogaea HOM05D003111 ORTHO05D003502 4.9e-06 55.8 127 22.8
CiPaw.01G238900 Carya illinoinensis HOM05D003111 ORTHO05D003502 4.9e-06 55.8 156 22.4
MSTRG.22688 Avicennia marina HOM05D003111 ORTHO05D003502 6.4e-06 55.5 154 26.6
Cc04_g03400 Coffea canephora HOM05D003111 ORTHO05D003502 6.4e-06 55.5 141 24.8
COL.COLO4_30384 Corchorus olitorius HOM05D003111 ORTHO05D003502 6.4e-06 55.5 132 20.5
Duzib235G0853 Durio zibethinus HOM05D003111 ORTHO05D003502 6.4e-06 55.5 185 19.5
BraA05t20807Z Brassica rapa HOM05D003111 ORTHO05D003502 8.3e-06 55.1 152 21.7
Lj7A649T23 Lonicera japonica HOM05D003111 ORTHO05D003502 8.3e-06 55.1 127 22.8


User provided reference genes

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