Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_10430 Physcomitrium patens HOM05D006119 ORTHO05D007641 2.3e-63 245.4 118 100.0
Pp3c18_18500 Physcomitrium patens HOM05D006119 ORTHO05D007641 1.1e-44 183.3 118 76.3
ATR0739G093 Amborella trichopoda HOM05D006119 ORTHO05D007641 4.2e-25 118.2 98 58.2
CDE05G1219 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 1.2e-24 116.7 106 52.8
Thhalv10015049m.g Eutrema salsugineum HOM05D006119 ORTHO05D007641 3.5e-24 115.2 101 52.5
AL8G34100 Arabidopsis lyrata HOM05D006119 ORTHO05D007641 6.0e-24 114.4 106 50.0
AT5G58005 Arabidopsis thaliana HOM05D006119 ORTHO05D007641 7.8e-24 114.0 106 50.0
BcaB01g04471 Brassica carinata HOM05D006119 ORTHO05D007641 7.8e-24 114.0 101 51.5
CARHR271810 Cardamine hirsuta HOM05D006119 ORTHO05D007641 1.3e-23 113.2 101 51.5
A03p12450 Brassica napus HOM05D000882 ORTHO05D001142 1.7e-23 112.8 100 52.0
BolC3t13907H Brassica oleracea HOM05D000882 ORTHO05D001142 1.7e-23 112.8 100 52.0
BraA03t10560Z Brassica rapa HOM05D000882 ORTHO05D001142 1.7e-23 112.8 100 52.0
Carub.0008s1855 Capsella rubella HOM05D006119 ORTHO05D007641 1.7e-23 112.8 106 49.1
TAR626G1228 Trochodendron aralioides HOM05D006119 ORTHO05D007641 1.7e-23 112.8 106 50.0
Aa31LG3G13820 Aethionema arabicum HOM05D006119 ORTHO05D007641 2.3e-23 112.5 101 51.5
C03p14650 Brassica napus HOM05D006119 ORTHO05D007641 2.3e-23 112.5 101 51.5
Lsat_1_v5_gn_5_91501 Lactuca sativa HOM05D006119 ORTHO05D007641 2.3e-23 112.5 101 53.5
Hund00673 Selenicereus undatus HOM05D006119 ORTHO05D007641 3.0e-23 112.1 101 52.5
SGA_v2.0_scaffold206G41813 Striga asiatica HOM05D006119 ORTHO05D007641 3.0e-23 112.1 101 53.5
CiPaw.15G174900 Carya illinoinensis HOM05D006119 ORTHO05D007641 8.7e-23 110.5 101 51.5
Migut.K00337 Erythranthe guttata HOM05D006119 ORTHO05D007641 8.7e-23 110.5 101 52.5
PSO111G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 8.7e-23 110.5 100 52.0
Cfa020842 Carpinus fangiana HOM05D006119 ORTHO05D007641 1.1e-22 110.2 101 50.5
ECA234G1280 Erigeron canadensis HOM05D006119 ORTHO05D007641 1.1e-22 110.2 93 57.0
RhsimUnG0039700 Rhododendron simsii HOM05D006119 ORTHO05D007641 1.1e-22 110.2 100 53.0
Zm00001eb041130 Zea mays HOM05D006119 ORTHO05D007641 1.1e-22 110.2 93 58.1
Oeu038007.1 Olea europaea HOM05D006119 ORTHO05D007641 1.5e-22 109.8 101 51.5
SMO137G0238 Selaginella moellendorffii HOM05D006119 ORTHO05D007641 1.5e-22 109.8 93 58.1
Haze_19227 Corylus avellana HOM05D006119 ORTHO05D007641 1.9e-22 109.4 101 50.5
Os08g0441400 Oryza sativa ssp. japonica HOM05D006119 ORTHO05D007641 1.9e-22 109.4 93 58.1
PSO561G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 1.9e-22 109.4 100 52.0
QL02p092825 Quercus lobata HOM05D006119 ORTHO05D007641 1.9e-22 109.4 101 49.5
TAR625G1054 Trochodendron aralioides HOM05D006119 ORTHO05D007641 1.9e-22 109.4 101 51.5
Hma1.2p1_0028F.1_g017420 Hydrangea macrophylla HOM05D006119 ORTHO05D007641 2.5e-22 109.0 101 52.5
HPP92_017474 Vanilla planifolia HOM05D006119 ORTHO05D007641 2.5e-22 109.0 93 54.8
Gorai.009G055300 Gossypium raimondii HOM05D006119 ORTHO05D007641 3.3e-22 108.6 101 49.5
Manes.06G037000 Manihot esculenta HOM05D006119 ORTHO05D007641 4.3e-22 108.2 106 47.2
Sed0003082 Sechium edule HOM05D006119 ORTHO05D007641 4.3e-22 108.2 100 53.0
Sopen12g005020 Solanum pennellii HOM05D006119 ORTHO05D007641 5.6e-22 107.8 96 52.1
PGSC0003DMG400007897 Solanum tuberosum HOM05D006119 ORTHO05D007641 5.6e-22 107.8 96 52.1
Nn8g39847 Nelumbo nucifera HOM05D006119 ORTHO05D007641 7.3e-22 107.5 96 54.2
GSVIVG01023584001 Vitis vinifera HOM05D006119 ORTHO05D007641 7.3e-22 107.5 96 53.1
Dinv42873 Davidia involucrata HOM05D006119 ORTHO05D007641 9.6e-22 107.1 96 55.2
Dinv43227 Davidia involucrata HOM05D006119 ORTHO05D007641 9.6e-22 107.1 96 55.2
Eucgr.L03135 Eucalyptus grandis HOM05D006119 ORTHO05D007641 9.6e-22 107.1 101 50.5
AUR62043251 Chenopodium quinoa HOM05D006119 ORTHO05D007641 1.3e-21 106.7 100 51.0
MBI15_g26716_MAGBIO Magnolia biondii HOM05D006119 ORTHO05D007641 1.3e-21 106.7 99 53.5
Actinidia04288 Actinidia chinensis HOM05D006119 ORTHO05D007641 2.1e-21 105.9 96 53.1
Aqoxy7G03440 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 2.1e-21 105.9 90 57.8
Peaxi162Scf00347g01022 Petunia axillaris HOM05D006119 ORTHO05D007641 2.1e-21 105.9 97 51.5
Cpa.g.sc46.139 Carica papaya HOM05D006119 ORTHO05D007641 2.8e-21 105.5 96 52.1
Eucgr.C02591 Eucalyptus grandis HOM05D006119 ORTHO05D007641 2.8e-21 105.5 101 49.5
MSTRG.26287 Avicennia marina HOM05D006119 ORTHO05D007641 3.6e-21 105.1 96 52.1
EL10Ac8g18851 Beta vulgaris HOM05D006119 ORTHO05D007641 3.6e-21 105.1 92 55.4
ClCG06G012280 Citrullus lanatus HOM05D006119 ORTHO05D007641 3.6e-21 105.1 93 54.8
Ciclev10009941m.g Citrus clementina HOM05D006119 ORTHO05D007641 3.6e-21 105.1 102 50.0
Rhsim01G0035400 Rhododendron simsii HOM05D006119 ORTHO05D007641 3.6e-21 105.1 97 52.6
Solyc12g010150.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 3.6e-21 105.1 95 51.6
Gohir.A05G052000 Gossypium hirsutum HOM05D006119 ORTHO05D007641 4.8e-21 104.8 96 51.0
Mapoly0012s0137 Marchantia polymorpha HOM05D006119 ORTHO05D007641 4.8e-21 104.8 90 61.1
Peaxi162Scf00062g00419 Petunia axillaris HOM05D006119 ORTHO05D007641 4.8e-21 104.8 96 50.0
Atru.chr7.85 Acer truncatum HOM05D006119 ORTHO05D007641 6.2e-21 104.4 108 46.3
arahy.Tifrunner.gnm1.ann1.TAM15G Arachis hypogaea HOM05D006119 ORTHO05D007641 6.2e-21 104.4 101 50.5
Manes.14G112500 Manihot esculenta HOM05D006119 ORTHO05D007641 6.2e-21 104.4 93 53.8
Oeu021261.1 Olea europaea HOM05D006119 ORTHO05D007641 6.2e-21 104.4 95 51.6
CSS0002774 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 8.1e-21 104.0 100 50.0
CSS0027400 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 8.1e-21 104.0 100 50.0
FvH4_1g01100 Fragaria vesca HOM05D006119 ORTHO05D007641 8.1e-21 104.0 100 51.0
FAN19G0026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 8.1e-21 104.0 100 51.0
Sc18g0007620 Simmondsia chinensis HOM05D006119 ORTHO05D007641 8.1e-21 104.0 94 54.3
Thecc.09G032800 Theobroma cacao HOM05D006119 ORTHO05D007641 1.1e-20 103.6 101 47.5
Gohir.D05G053500 Gossypium hirsutum HOM05D006119 ORTHO05D007641 1.4e-20 103.2 96 50.0
SalBow1G1238 Salvia bowleyana HOM05D006119 ORTHO05D007641 1.4e-20 103.2 95 52.6
FAN23G1211 Fragaria x ananassa HOM05D006119 ORTHO05D007641 2.4e-20 102.4 100 50.0
Lj4g0015042 Lotus japonicus HOM05D006119 ORTHO05D007641 2.4e-20 102.4 101 47.5
Potri.018G109400 Populus trichocarpa HOM05D006119 ORTHO05D007641 2.4e-20 102.4 106 47.2
Sabra18G0092300 Salix brachista HOM05D006119 ORTHO05D007641 2.4e-20 102.4 106 46.2
Actinidia23551 Actinidia chinensis HOM05D006119 ORTHO05D007641 3.1e-20 102.1 101 48.5
FAN28G1026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 3.1e-20 102.1 100 50.0
PGR102G3064 Punica granatum HOM05D006119 ORTHO05D007641 3.1e-20 102.1 106 46.2
FAN26G3335 Fragaria x ananassa HOM05D006119 ORTHO05D007641 4.0e-20 101.7 100 50.0
Lalb_Chr07g0179791 Lupinus albus HOM05D006119 ORTHO05D007641 4.0e-20 101.7 96 51.0
arahy.Tifrunner.gnm1.ann1.I28AR0 Arachis hypogaea HOM05D006119 ORTHO05D007641 5.3e-20 101.3 101 49.5
TWI63G1376 Tripterygium wilfordii HOM05D006119 ORTHO05D007641 6.9e-20 100.9 101 46.5
CANSAT11G0807 Cannabis sativa HOM05D006119 ORTHO05D007641 9.0e-20 100.5 96 50.0
Ca_21116_v3 Cicer arietinum L. HOM05D006119 ORTHO05D007641 1.2e-19 100.1 96 49.0
Cc06_g15170 Coffea canephora HOM05D006119 ORTHO05D007641 1.5e-19 99.8 96 47.9
unitig_899.g15448 Utricularia gibba HOM05D006119 ORTHO05D007641 1.5e-19 99.8 88 53.4
Duzib187G0693 Durio zibethinus HOM05D006119 ORTHO05D007641 2.6e-19 99.0 96 49.0
Potri.006G186500 Populus trichocarpa HOM05D006119 ORTHO05D007641 2.6e-19 99.0 106 44.3
Glyma.02G202700 Glycine max HOM05D006119 ORTHO05D007641 4.5e-19 98.2 96 50.0
Sopen07g001370 Solanum pennellii HOM05D006119 ORTHO05D007641 7.6e-19 97.4 106 42.5
COL.COLO4_18789 Corchorus olitorius HOM05D006119 ORTHO05D007641 9.9e-19 97.1 101 44.6
RcHm_v2.0_Chr2g0085901 Rosa chinensis HOM05D006119 ORTHO05D007641 9.9e-19 97.1 88 53.4
Solyc07g005410.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 9.9e-19 97.1 106 42.5
CsaV3_1G028790 Cucumis sativus L. HOM05D006119 ORTHO05D007641 1.7e-18 96.3 87 54.0
TPR.G39188 Trifolium pratense HOM05D006119 ORTHO05D007641 1.7e-18 96.3 99 49.5
vmacro06086 Vaccinium macrocarpon HOM05D006119 ORTHO05D007641 1.7e-18 96.3 112 45.5
MELO3C029440.2 Cucumis melo HOM05D006119 ORTHO05D007641 2.2e-18 95.9 104 49.0
MD15G1154500 Malus domestica HOM05D006119 ORTHO05D007641 2.2e-18 95.9 101 46.5
Nitab4.5_0004815g0030 Nicotiana tabacum HOM05D006119 ORTHO05D007641 2.2e-18 95.9 123 40.7
Prupe.7G260900 Prunus persica HOM05D006119 ORTHO05D007641 2.2e-18 95.9 101 45.5
CAN.G1116.12 Capsicum annuum HOM05D006119 ORTHO05D007641 2.9e-18 95.5 95 47.4
Phvul.003G157000 Phaseolus vulgaris HOM05D006119 ORTHO05D007641 3.8e-18 95.1 96 47.9
Medtr4g131150 Medicago truncatula HOM05D006119 ORTHO05D007641 4.9e-18 94.7 94 47.9
Psat0ss6646g0160 Pisum sativum HOM05D006119 ORTHO05D007641 1.9e-17 92.8 100 48.0
DCAR_020878 Daucus carota HOM05D006119 ORTHO05D007641 3.2e-17 92.0 78 57.7
Nitab4.5_0006408g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 5.4e-17 91.3 80 51.2
Nitab4.5_0001813g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 9.3e-17 90.5 84 48.8
MD02G1009100 Malus domestica HOM05D006119 ORTHO05D007641 2.7e-16 89.0 96 46.9
Sed0018834 Sechium edule HOM05D006119 ORTHO05D007641 6.0e-16 87.8 79 54.4
Nitab4.5_0013449g0010 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.0e-15 87.0 93 45.2
Rhsim03G0256600 Rhododendron simsii HOM05D006119 ORTHO05D007641 1.3e-15 86.7 122 41.8
Pp3c22_3250 Physcomitrium patens HOM05D006119 ORTHO05D007641 1.8e-15 86.3 70 58.6
HanXRQChr10g0314681 Helianthus annuus HOM05D006119 ORTHO05D007641 5.1e-15 84.7 93 44.1
Actinidia38675 Actinidia chinensis HOM05D006119 ORTHO05D007641 6.7e-15 84.3 84 47.6
PGSC0003DMG400011173 Solanum tuberosum HOM05D006119 ORTHO05D007641 6.7e-15 84.3 80 47.5
Nitab4.5_0002315g0130 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.1e-14 83.6 101 42.6
Nitab4.5_0001478g0060 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.3e-13 80.1 101 41.6
AagrBONN_evm.TU.Sc2ySwM_228.1886 Anthoceros agrestis HOM05D006119 ORTHO05D007641 2.1e-13 79.3 68 54.4
SEGI_38164 Sequoiadendron giganteum HOM05D006119 ORTHO05D007641 2.1e-13 79.3 68 54.4
Glyma.17G075100 Glycine max HOM05D006119 ORTHO05D007641 2.8e-13 79.0 79 50.6
Sp6g19680 Schrenkiella parvula HOM05D006119 ORTHO05D007641 3.1e-12 75.5 78 47.4
Aqoxy4G01852 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 4.0e-12 75.1 67 52.2
CAN.G551.35 Capsicum annuum HOM05D006119 ORTHO05D007641 3.8e-10 68.6 68 45.6
BcaNung07255 Brassica carinata HOM05D000882 ORTHO05D001142 1.9e-09 66.2 53 49.1
Nitab4.5_0003612g0050 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.8e-07 59.7 67 49.3
CDE05G1090 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 4.3e-06 55.1 68 39.7


User provided reference genes

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