Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 3.5e-175 618.2 324 100.0
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 3.0e-118 429.1 324 72.5
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 3.4e-69 266.2 231 61.9
SEGI_22580 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.5e-45 187.6 219 45.2
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 8.4e-28 128.6 225 36.4
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 1.6e-26 124.4 207 38.6
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.8e-25 120.9 205 37.6
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 2.2e-20 104.0 311 28.9
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 2.9e-20 103.6 211 31.3
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 3.9e-17 93.2 214 31.8
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 5.1e-17 92.8 205 31.2
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 1.5e-16 91.3 243 28.8
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 3.3e-16 90.1 234 26.5
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 5.7e-16 89.4 198 31.8
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 5.7e-16 89.4 235 27.7
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 2.2e-15 87.4 210 29.5
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 2.8e-15 87.0 213 29.6
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 2.8e-15 87.0 197 28.4
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 3.7e-15 86.7 216 26.9
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 4.8e-15 86.3 234 28.6
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.8e-14 84.3 216 27.8
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 4.1e-14 83.2 245 27.8
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 4.1e-14 83.2 160 31.2
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.2e-13 81.6 197 28.4
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 1.2e-13 81.6 230 27.0
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 1.2e-13 81.6 213 26.8
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.5e-13 81.3 214 27.1
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 2.0e-13 80.9 230 27.0
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 2.6e-13 80.5 207 26.6
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 7.7e-13 79.0 231 27.3
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 7.7e-13 79.0 253 26.9
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 1.0e-12 78.6 213 29.1
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.0e-12 78.6 213 29.1
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.3e-12 78.2 213 28.6
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 1.3e-12 78.2 236 25.8
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 2.2e-12 77.4 230 27.0
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 2.9e-12 77.0 203 27.6
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 2.9e-12 77.0 195 27.2
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 6.5e-12 75.9 220 25.0
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 8.5e-12 75.5 206 28.2
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 1.4e-11 74.7 153 26.1
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.4e-11 74.7 153 26.1
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 1.4e-11 74.7 205 27.8
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 1.4e-11 74.7 212 27.8
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 1.9e-11 74.3 269 24.9
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 2.5e-11 73.9 141 27.0
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 2.5e-11 73.9 207 26.1
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 3.2e-11 73.6 206 28.2
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 4.2e-11 73.2 256 25.4
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 5.5e-11 72.8 111 28.8
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 7.2e-11 72.4 205 27.8
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 7.2e-11 72.4 210 27.1
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 9.4e-11 72.0 213 29.1
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 1.6e-10 71.2 209 27.8
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 2.1e-10 70.9 213 29.1
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 2.1e-10 70.9 212 29.2
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 2.7e-10 70.5 205 28.3
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 2.7e-10 70.5 217 27.6
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 2.7e-10 70.5 217 27.6
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 2.7e-10 70.5 223 27.8
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 6.1e-10 69.3 226 26.1
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 7.9e-10 68.9 211 27.0
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 7.9e-10 68.9 226 25.7
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 1.0e-09 68.6 212 26.4
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 1.0e-09 68.6 214 25.7
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 1.8e-09 67.8 213 25.8
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 3.9e-09 66.6 211 27.0
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 3.9e-09 66.6 229 25.8
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 3.9e-09 66.6 213 27.7
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 3.9e-09 66.6 221 27.1
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 5.1e-09 66.2 211 27.5
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 5.1e-09 66.2 205 28.3
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 5.1e-09 66.2 211 27.5
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 1.1e-08 65.1 212 26.9
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 1.1e-08 65.1 212 26.9
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 1.1e-08 65.1 220 24.5
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 1.5e-08 64.7 207 25.6
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 1.5e-08 64.7 229 25.3
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 2.6e-08 63.9 209 29.2
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 4.4e-08 63.2 224 25.9
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 7.4e-08 62.4 236 25.0
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 7.4e-08 62.4 216 25.0
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 1.3e-07 61.6 218 26.6
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.3e-07 61.6 213 28.6
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 2.2e-07 60.8 251 25.5
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 6.3e-07 59.3 251 24.7
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 1.1e-06 58.5 221 24.0
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 1.4e-06 58.2 251 23.5
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 1.8e-06 57.8 235 24.7
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 3.1e-06 57.0 193 26.4
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 4.1e-06 56.6 96 31.2
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 5.3e-06 56.2 231 26.4
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 5.3e-06 56.2 228 24.1
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 5.3e-06 56.2 236 22.9
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 9.1e-06 55.5 245 25.7


User provided reference genes

Program Settings