Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 1.8e-75 285.8 139 100.0
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 2.8e-36 155.6 126 61.1
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 8.1e-36 154.1 102 67.6
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 1.4e-35 153.3 105 64.8
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.8e-35 152.9 102 66.7
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 2.3e-35 152.5 122 59.8
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 2.3e-35 152.5 122 59.8
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 2.3e-35 152.5 105 65.7
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 3.1e-35 152.1 105 64.8
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 3.1e-35 152.1 102 66.7
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 4.0e-35 151.8 105 64.8
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 4.0e-35 151.8 112 62.5
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 5.2e-35 151.4 102 66.7
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.2e-35 151.4 102 66.7
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.2e-35 151.4 102 66.7
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.2e-35 151.4 102 66.7
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 5.2e-35 151.4 102 64.7
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 8.9e-35 150.6 102 64.7
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 1.2e-34 150.2 102 65.7
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.2e-34 150.2 102 64.7
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 1.5e-34 149.8 105 62.9
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 1.5e-34 149.8 105 64.8
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.5e-34 149.8 105 64.8
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 2.0e-34 149.4 105 62.9
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 2.0e-34 149.4 105 62.9
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 2.0e-34 149.4 105 63.8
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 2.0e-34 149.4 105 63.8
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 2.6e-34 149.1 105 65.7
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 2.6e-34 149.1 105 62.9
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 4.4e-34 148.3 105 61.9
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 4.4e-34 148.3 105 63.8
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 4.4e-34 148.3 102 64.7
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 5.8e-34 147.9 122 57.4
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 7.5e-34 147.5 101 66.3
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 9.8e-34 147.1 105 64.8
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 9.8e-34 147.1 106 63.2
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 9.8e-34 147.1 103 65.0
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.3e-33 146.7 105 63.8
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.3e-33 146.7 105 63.8
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.7e-33 146.4 102 64.7
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.2e-33 146.0 102 61.8
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 2.2e-33 146.0 102 63.7
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 2.2e-33 146.0 103 65.0
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 2.9e-33 145.6 105 62.9
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 3.7e-33 145.2 122 56.6
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 3.7e-33 145.2 102 64.7
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 3.7e-33 145.2 102 64.7
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 3.7e-33 145.2 112 62.5
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 4.9e-33 144.8 102 63.7
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 4.9e-33 144.8 101 62.4
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 4.9e-33 144.8 122 56.6
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 4.9e-33 144.8 122 56.6
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 4.9e-33 144.8 102 64.7
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 8.3e-33 144.1 102 60.8
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 8.3e-33 144.1 105 62.9
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.1e-32 143.7 105 62.9
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.1e-32 143.7 112 58.9
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.4e-32 143.3 105 62.9
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.4e-32 143.3 102 62.7
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.9e-32 142.9 102 63.7
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 2.4e-32 142.5 105 60.0
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 2.4e-32 142.5 119 57.1
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 3.2e-32 142.1 102 62.7
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 3.2e-32 142.1 100 64.0
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 3.2e-32 142.1 106 63.2
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 3.2e-32 142.1 105 61.9
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 3.2e-32 142.1 102 61.8
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 4.1e-32 141.7 102 62.7
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 4.1e-32 141.7 102 62.7
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 4.1e-32 141.7 105 61.9
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 4.1e-32 141.7 101 62.4
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 5.4e-32 141.4 102 62.7
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 5.4e-32 141.4 101 62.4
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 5.4e-32 141.4 99 64.6
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 7.1e-32 141.0 117 57.3
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 1.2e-31 140.2 102 61.8
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.6e-31 139.8 91 67.0
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 1.6e-31 139.8 102 62.7
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.6e-31 139.8 116 58.6
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.6e-31 139.8 102 61.8
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 2.1e-31 139.4 102 59.8
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 2.7e-31 139.0 97 63.9
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 4.6e-31 138.3 102 61.8
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 4.6e-31 138.3 102 60.8
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 6.0e-31 137.9 101 62.4
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 6.0e-31 137.9 101 63.4
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 6.0e-31 137.9 101 62.4
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 6.0e-31 137.9 120 55.8
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 6.0e-31 137.9 101 62.4
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 1.3e-30 136.7 101 62.4
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.3e-30 136.7 101 62.4
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 1.3e-30 136.7 105 60.0
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 1.3e-30 136.7 102 61.8
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 1.3e-30 136.7 101 62.4
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 1.7e-30 136.3 101 62.4
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 1.7e-30 136.3 101 62.4
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 1.7e-30 136.3 101 62.4
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.7e-30 136.3 101 62.4
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 1.7e-30 136.3 101 62.4
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 1.7e-30 136.3 101 62.4
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.7e-30 136.3 102 61.8
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 2.3e-30 136.0 101 61.4
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 2.3e-30 136.0 101 61.4
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 2.3e-30 136.0 101 61.4
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 2.3e-30 136.0 102 60.8
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 5.1e-30 134.8 102 59.8
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 6.6e-30 134.4 106 59.4
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 8.6e-30 134.0 102 57.8
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 1.5e-29 133.3 91 64.8
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 3.3e-29 132.1 91 62.6
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 9.5e-29 130.6 119 52.9
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 8.1e-28 127.5 102 59.8
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 8.1e-28 127.5 102 55.9
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 6.8e-27 124.4 85 64.7
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 6.8e-27 124.4 85 64.7
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 1.5e-26 123.2 88 63.6
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 2.6e-26 122.5 88 62.5
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 3.4e-26 122.1 112 57.1
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 7.6e-26 120.9 85 62.4
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 1.3e-25 120.2 99 56.6
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 2.2e-25 119.4 85 62.4
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 2.9e-25 119.0 85 62.4
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 2.9e-25 119.0 85 64.7
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.9e-25 119.0 117 49.6
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 8.4e-25 117.5 85 62.4
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 1.9e-24 116.3 88 59.1
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 3.2e-24 115.5 88 60.2
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 3.5e-23 112.1 74 66.2
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 2.3e-22 109.4 84 60.7
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 8.6e-22 107.5 83 59.0
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 1.9e-21 106.3 89 57.3
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 4.3e-21 105.1 89 56.2
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 4.3e-21 105.1 115 48.7
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 6.8e-19 97.8 65 64.6
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 8.9e-19 97.4 102 49.0
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 2.6e-18 95.9 77 57.1
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 7.6e-18 94.4 65 61.5
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.7e-17 93.2 119 43.7
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 2.9e-17 92.4 79 55.7
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 4.9e-17 91.7 94 51.1
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 6.0e-15 84.7 105 41.9
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 5.1e-14 81.6 105 42.9
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 4.0e-11 72.0 73 47.9
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 4.0e-11 72.0 57 54.4
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 5.3e-11 71.6 53 58.5
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 6.9e-11 71.2 80 43.8
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.2e-10 70.5 56 57.1
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.8e-10 68.2 69 46.4
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 9.9e-10 67.4 72 43.1
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 9.3e-08 60.8 49 55.1
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 1.7e-06 56.6 63 47.6
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 6.6e-06 54.7 53 49.1


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