Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 2.1e-211 738.8 389 100.0
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 1.5e-87 327.4 296 52.7
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 4.1e-85 319.3 357 46.8
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 2.7e-81 306.6 294 52.0
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 1.4e-66 257.7 319 47.0
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 1.6e-41 174.5 157 51.6
Cre01.g005950 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D018306 3.3e-34 150.2 289 35.3
PRCOL_00003073 Prasinoderma coloniale HOM05D004215 ORTHO05D018306 1.2e-23 115.2 283 30.0
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 2.0e-15 87.8 267 25.1
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 3.4e-15 87.0 169 29.0
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 2.9e-14 84.0 267 25.5
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 2.9e-14 84.0 269 26.0
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 6.4e-14 82.8 267 26.6
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 8.3e-14 82.4 268 26.9
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.1e-13 82.0 267 24.7
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.9e-13 81.3 142 33.1
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 3.2e-13 80.5 236 25.8
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 9.2e-13 79.0 267 24.7
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 1.6e-12 78.2 267 24.0
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.6e-12 78.2 267 25.5
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.1e-12 77.8 142 29.6
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 2.7e-12 77.4 142 31.0
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 2.7e-12 77.4 158 29.1
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 3.5e-12 77.0 142 30.3
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 4.6e-12 76.6 158 27.8
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 4.6e-12 76.6 267 24.3
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 4.6e-12 76.6 142 31.0
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 4.6e-12 76.6 142 28.2
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 6.0e-12 76.3 269 26.0
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 6.0e-12 76.3 142 30.3
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 7.8e-12 75.9 158 25.9
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 7.8e-12 75.9 156 28.2
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.0e-11 75.5 142 31.0
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 1.0e-11 75.5 142 31.7
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.3e-11 75.1 142 28.2
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.3e-11 75.1 142 30.3
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.7e-11 74.7 158 27.8
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.7e-11 74.7 158 27.8
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.7e-11 74.7 158 27.8
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.7e-11 74.7 142 29.6
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.7e-11 74.7 142 29.6
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 1.7e-11 74.7 143 28.0
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.7e-11 74.7 142 28.9
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 1.7e-11 74.7 269 22.3
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 1.7e-11 74.7 271 24.0
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 2.3e-11 74.3 142 28.2
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 2.3e-11 74.3 142 28.9
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 3.0e-11 73.9 158 27.8
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 3.0e-11 73.9 158 27.2
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 3.0e-11 73.9 142 31.0
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 3.0e-11 73.9 142 29.6
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 5.1e-11 73.2 142 29.6
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 5.1e-11 73.2 142 30.3
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 5.1e-11 73.2 142 29.6
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 6.6e-11 72.8 131 29.0
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 6.6e-11 72.8 142 28.9
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 6.6e-11 72.8 161 28.0
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.6e-11 72.4 142 29.6
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.6e-11 72.4 142 28.9
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 8.6e-11 72.4 158 26.6
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 8.6e-11 72.4 158 26.6
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 8.6e-11 72.4 158 26.6
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 8.6e-11 72.4 178 30.9
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 8.6e-11 72.4 272 25.0
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.1e-10 72.0 142 29.6
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.1e-10 72.0 142 30.3
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 1.1e-10 72.0 142 29.6
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.5e-10 71.6 158 26.6
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.5e-10 71.6 142 28.9
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 1.5e-10 71.6 169 27.2
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 1.9e-10 71.2 130 29.2
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.9e-10 71.2 130 29.2
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.9e-10 71.2 130 29.2
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.9e-10 71.2 130 29.2
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 1.9e-10 71.2 296 23.3
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 2.5e-10 70.9 158 26.6
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.5e-10 70.9 169 27.2
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 2.5e-10 70.9 142 29.6
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 2.5e-10 70.9 142 29.6
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 3.3e-10 70.5 158 25.9
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 3.3e-10 70.5 158 25.9
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 3.3e-10 70.5 142 29.6
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 3.3e-10 70.5 189 25.9
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 3.3e-10 70.5 253 25.3
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 3.3e-10 70.5 169 26.6
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 3.3e-10 70.5 142 30.3
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 4.3e-10 70.1 158 25.9
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 5.6e-10 69.7 142 28.2
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 5.6e-10 69.7 155 27.1
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 5.6e-10 69.7 142 28.9
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 5.6e-10 69.7 142 28.2
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 5.6e-10 69.7 157 27.4
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 7.3e-10 69.3 142 26.8
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 7.3e-10 69.3 130 27.7
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 7.3e-10 69.3 169 27.8
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 9.5e-10 68.9 130 29.2
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 9.5e-10 68.9 130 29.2
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 9.5e-10 68.9 131 29.0
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 1.2e-09 68.6 158 26.6
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 1.2e-09 68.6 142 27.5
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 2.1e-09 67.8 142 28.2
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 2.1e-09 67.8 142 27.5
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 2.8e-09 67.4 129 30.2
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 3.6e-09 67.0 159 26.4
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 3.6e-09 67.0 159 26.4
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 3.6e-09 67.0 142 27.5
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 3.6e-09 67.0 129 29.5
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 4.7e-09 66.6 158 28.5
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 4.7e-09 66.6 142 28.2
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 4.7e-09 66.6 129 30.2
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 4.7e-09 66.6 130 29.2
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 4.7e-09 66.6 130 30.0
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 6.2e-09 66.2 156 26.9
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.1e-09 65.9 126 31.0
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 8.1e-09 65.9 161 26.1
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 1.4e-08 65.1 143 27.3
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 1.8e-08 64.7 133 27.1
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.3e-08 64.3 131 29.0
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 3.1e-08 63.9 316 22.5
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 3.1e-08 63.9 142 26.1
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 4.0e-08 63.5 247 23.5
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 5.2e-08 63.2 130 26.9
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 5.2e-08 63.2 128 27.3
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 6.8e-08 62.8 271 25.5
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 6.8e-08 62.8 129 27.9
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 6.8e-08 62.8 129 27.9
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 2.0e-07 61.2 136 27.2
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.4e-07 60.5 163 25.2
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.4e-07 60.1 152 25.7
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 2.9e-06 57.4 154 27.9
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 2.9e-06 57.4 142 28.9
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 4.9e-06 56.6 100 30.0
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 6.4e-06 56.2 150 27.3


User provided reference genes

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