Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 3.1e-50 201.4 97 100.0
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 1.2e-30 136.3 89 68.5
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 3.5e-30 134.8 91 67.0
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 7.9e-30 133.7 91 63.7
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 1.8e-29 132.5 91 67.0
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 3.9e-29 131.3 91 62.6
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 6.7e-29 130.6 91 64.8
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 8.7e-29 130.2 91 61.5
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 8.7e-29 130.2 91 62.6
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 1.1e-28 129.8 91 63.7
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 1.1e-28 129.8 91 63.7
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 1.1e-28 129.8 91 65.9
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 1.5e-28 129.4 91 63.7
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 1.5e-28 129.4 91 62.6
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 1.9e-28 129.0 90 66.7
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 2.5e-28 128.6 91 62.6
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 3.3e-28 128.3 91 63.7
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 3.3e-28 128.3 91 63.7
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 3.3e-28 128.3 90 62.2
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 4.3e-28 127.9 91 60.4
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 5.6e-28 127.5 91 62.6
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 5.6e-28 127.5 91 62.6
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 5.6e-28 127.5 91 62.6
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 5.6e-28 127.5 91 62.6
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 7.4e-28 127.1 91 62.6
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 7.4e-28 127.1 91 61.5
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 9.6e-28 126.7 91 62.6
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 9.6e-28 126.7 91 62.6
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 9.6e-28 126.7 91 62.6
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 9.6e-28 126.7 91 61.5
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 9.6e-28 126.7 91 61.5
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 9.6e-28 126.7 91 61.5
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 1.3e-27 126.3 91 62.6
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 1.3e-27 126.3 91 62.6
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 1.3e-27 126.3 91 61.5
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 1.3e-27 126.3 91 60.4
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 1.6e-27 125.9 91 59.3
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 1.6e-27 125.9 91 61.5
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 1.6e-27 125.9 89 61.8
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 2.1e-27 125.6 91 61.5
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 2.1e-27 125.6 91 61.5
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 2.1e-27 125.6 91 61.5
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 2.1e-27 125.6 91 61.5
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 2.1e-27 125.6 91 61.5
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 2.1e-27 125.6 91 59.3
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 2.1e-27 125.6 91 60.4
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 2.1e-27 125.6 91 60.4
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 2.8e-27 125.2 91 61.5
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 2.8e-27 125.2 91 62.6
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 2.8e-27 125.2 91 60.4
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 3.7e-27 124.8 91 61.5
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 4.8e-27 124.4 91 60.4
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 4.8e-27 124.4 91 60.4
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 4.8e-27 124.4 91 60.4
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 4.8e-27 124.4 91 59.3
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 4.8e-27 124.4 91 59.3
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 6.2e-27 124.0 91 59.3
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 8.1e-27 123.6 91 60.4
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 8.1e-27 123.6 90 63.3
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 8.1e-27 123.6 91 59.3
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 8.1e-27 123.6 91 60.4
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 8.1e-27 123.6 91 61.5
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 1.1e-26 123.2 87 64.4
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 1.1e-26 123.2 91 60.4
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 1.1e-26 123.2 91 60.4
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 1.1e-26 123.2 91 60.4
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 1.1e-26 123.2 91 59.3
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.4e-26 122.9 91 58.2
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 1.4e-26 122.9 91 58.2
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 1.4e-26 122.9 91 58.2
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 1.4e-26 122.9 91 58.2
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 1.4e-26 122.9 91 59.3
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 1.4e-26 122.9 91 60.4
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 1.4e-26 122.9 91 59.3
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 1.4e-26 122.9 91 60.4
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 1.8e-26 122.5 91 60.4
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 1.8e-26 122.5 91 58.2
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 1.8e-26 122.5 91 58.2
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 2.4e-26 122.1 91 58.2
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 2.4e-26 122.1 91 58.2
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 2.4e-26 122.1 61 90.2
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 3.1e-26 121.7 91 57.1
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 3.1e-26 121.7 91 57.1
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 3.1e-26 121.7 91 58.2
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 5.3e-26 120.9 90 62.2
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 5.3e-26 120.9 91 59.3
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 5.3e-26 120.9 91 59.3
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 5.3e-26 120.9 91 58.2
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 5.3e-26 120.9 91 58.2
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 6.9e-26 120.6 91 57.1
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 9.0e-26 120.2 91 57.1
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 1.2e-25 119.8 91 58.2
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 1.2e-25 119.8 91 56.0
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 1.5e-25 119.4 91 58.2
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 1.5e-25 119.4 91 58.2
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 1.5e-25 119.4 91 58.2
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 2.0e-25 119.0 90 57.8
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 3.4e-25 118.2 91 56.0
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 3.4e-25 118.2 90 56.7
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 3.4e-25 118.2 91 58.2
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 4.5e-25 117.9 91 54.9
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 4.5e-25 117.9 92 56.5
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 7.6e-25 117.1 91 58.2
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 1.3e-24 116.3 87 57.5
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 1.7e-24 115.9 91 53.8
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 1.7e-24 115.9 81 64.2
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.7e-24 115.9 105 52.4
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 3.8e-24 114.8 91 56.0
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 4.9e-24 114.4 91 54.9
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 1.1e-23 113.2 112 50.0
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 1.4e-23 112.8 96 55.2
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 1.4e-23 112.8 91 56.0
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 1.9e-23 112.5 91 54.9
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 3.2e-23 111.7 91 56.0
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 5.5e-23 110.9 91 54.9
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 9.3e-23 110.2 91 54.9
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 1.2e-22 109.8 91 53.8
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 1.2e-22 109.8 91 52.7
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 2.7e-22 108.6 91 54.9
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.7e-22 108.6 91 53.8
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 4.6e-22 107.8 91 54.9
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 4.6e-22 107.8 91 54.9
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 4.6e-22 107.8 91 54.9
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 3.0e-21 105.1 73 61.6
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 5.1e-21 104.4 101 46.5
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 1.5e-20 102.8 72 62.5
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 1.9e-20 102.4 64 68.8
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 5.6e-20 100.9 70 62.9
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 5.6e-20 100.9 142 38.7
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 2.1e-19 99.0 90 50.0
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 2.8e-19 98.6 63 69.8
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 4.0e-18 94.7 64 60.9
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 5.3e-18 94.4 64 62.5
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 6.9e-18 94.0 90 47.8
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 9.0e-18 93.6 64 60.9
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 9.0e-18 93.6 64 59.4
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 1.2e-17 93.2 64 59.4
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 1.5e-17 92.8 63 63.5
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 3.4e-17 91.7 64 62.5
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 7.6e-17 90.5 65 56.9
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 1.7e-16 89.4 60 63.3
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 2.2e-16 89.0 63 57.1
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 1.1e-15 86.7 63 57.1
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 1.2e-14 83.2 91 46.2
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 1.2e-14 83.2 78 51.3
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 2.1e-14 82.4 65 52.3
MCO03G395 Micromonas commoda HOM05D005067 ORTHO05D006105 7.9e-14 80.5 83 43.4


User provided reference genes

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