Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.2e-141 506.5 253 100.0
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 2.7e-66 256.1 221 54.8
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 6.1e-66 255.0 219 55.7
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 3.0e-57 226.1 220 50.0
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 2.0e-48 196.8 220 43.2
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 4.9e-47 192.2 223 44.8
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 6.3e-47 191.8 220 42.3
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 1.1e-46 191.0 226 43.4
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 1.8e-46 190.3 237 40.5
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 3.1e-46 189.5 222 44.1
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 4.1e-46 189.1 220 43.6
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.6e-45 187.2 213 42.7
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 2.7e-45 186.4 221 43.9
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 4.5e-45 185.7 231 40.7
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 4.5e-45 185.7 222 41.9
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 7.8e-45 184.9 222 43.2
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 1.0e-44 184.5 220 43.2
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 1.0e-44 184.5 220 43.6
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 2.3e-44 183.3 218 43.6
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 3.8e-44 182.6 221 43.9
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 3.8e-44 182.6 222 42.3
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 3.8e-44 182.6 219 42.0
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 3.8e-44 182.6 221 41.6
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 3.8e-44 182.6 220 43.6
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 5.0e-44 182.2 220 44.5
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 6.6e-44 181.8 219 43.4
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 1.1e-43 181.0 220 44.1
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 1.5e-43 180.6 231 40.3
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 1.9e-43 180.3 237 40.1
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 1.9e-43 180.3 237 40.1
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 1.9e-43 180.3 220 43.2
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 3.3e-43 179.5 220 41.8
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 4.3e-43 179.1 220 42.7
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 7.3e-43 178.3 222 41.0
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 7.3e-43 178.3 220 42.7
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 9.5e-43 177.9 220 41.4
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 9.5e-43 177.9 220 43.6
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 9.5e-43 177.9 224 41.5
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 1.6e-42 177.2 221 40.7
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.6e-42 177.2 233 41.2
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 1.6e-42 177.2 220 40.9
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 1.6e-42 177.2 220 41.8
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.1e-42 176.8 226 41.6
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 2.1e-42 176.8 243 39.1
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 4.7e-42 175.6 220 40.9
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 6.1e-42 175.3 221 40.7
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 6.1e-42 175.3 221 40.7
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 6.1e-42 175.3 226 41.2
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 6.1e-42 175.3 226 40.7
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 1.0e-41 174.5 220 40.5
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 1.4e-41 174.1 225 41.3
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 1.4e-41 174.1 218 39.9
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 1.8e-41 173.7 195 43.1
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 1.8e-41 173.7 238 39.5
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.8e-41 173.7 221 43.0
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 3.0e-41 172.9 219 39.7
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 4.0e-41 172.6 220 41.4
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 5.2e-41 172.2 220 40.5
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 5.2e-41 172.2 230 39.6
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 6.8e-41 171.8 222 40.1
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 6.8e-41 171.8 220 40.9
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 8.9e-41 171.4 225 40.9
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 1.5e-40 170.6 222 41.9
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 1.5e-40 170.6 209 41.1
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 2.6e-40 169.9 194 42.8
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 7.5e-40 168.3 216 41.7
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 9.8e-40 167.9 216 41.7
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 9.8e-40 167.9 220 40.9
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 2.2e-39 166.8 220 40.0
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 6.4e-39 165.2 220 40.5
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 6.4e-39 165.2 219 38.4
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 1.1e-38 164.5 208 42.3
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 1.4e-38 164.1 219 37.9
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 1.8e-38 163.7 220 38.6
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.4e-38 163.3 216 41.2
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 2.4e-38 163.3 222 39.2
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 4.1e-38 162.5 220 40.0
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 7.0e-38 161.8 219 37.9
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 9.2e-38 161.4 219 38.8
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 1.6e-37 160.6 220 39.1
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 1.6e-37 160.6 220 39.5
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 1.7e-36 157.1 220 36.8
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 1.7e-36 157.1 220 36.8
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 3.9e-36 156.0 182 42.3
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 6.6e-36 155.2 222 37.4
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 8.6e-36 154.8 189 41.3
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 1.1e-35 154.5 220 36.8
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 1.1e-35 154.5 220 36.8
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 1.5e-35 154.1 220 36.8
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 4.3e-35 152.5 221 38.5
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 2.8e-34 149.8 178 42.7
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 3.1e-33 146.4 221 36.7
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 3.1e-33 146.4 201 40.8
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 4.0e-33 146.0 161 47.8
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 2.6e-32 143.3 166 43.4
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 2.6e-32 143.3 161 47.2
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 3.2e-30 136.3 221 35.7
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 1.3e-28 131.0 183 38.8
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 6.2e-26 122.1 182 36.3
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.1e-25 121.3 167 40.7
AagrBONN_evm.TU.Sc2ySwM_117.2950 Anthoceros agrestis HOM05D006617 ORTHO05D008247 1.4e-25 120.9 216 32.4
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.7e-23 114.0 114 47.4
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 4.1e-22 109.4 161 35.4
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 1.1e-19 101.3 114 44.7
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 1.6e-18 97.4 93 46.2
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.1e-17 94.7 176 34.7
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.4e-17 94.4 162 34.6
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 5.2e-17 92.4 127 38.6
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 8.9e-17 91.7 114 39.5
Pp3c15_7020 Physcomitrium patens HOM05D003252 ORTHO05D003640 7.6e-16 88.6 218 28.0
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 2.9e-15 86.7 93 41.9
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 4.9e-15 85.9 176 32.4
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 2.7e-13 80.1 129 33.3
SMO307G0050 Selaginella moellendorffii HOM05D037974 ORTHO05D008247 1.5e-11 74.3 224 25.9
Aqoxy7G04115 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 1.2e-10 71.2 226 24.8
CsaV3_2G001200 Cucumis sativus L. HOM05D003252 ORTHO05D003640 1.4e-09 67.8 108 36.1
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 1.8e-09 67.4 98 41.8
ClCG11G001480 Citrullus lanatus HOM05D003252 ORTHO05D003640 4.0e-09 66.2 103 36.9
PSO386G0167 Papaver somniferum HOM05D003252 ORTHO05D003640 6.9e-09 65.5 220 24.5
MELO3C004648.2 Cucumis melo HOM05D003252 ORTHO05D003640 1.2e-08 64.7 102 35.3
PSO210G6784 Papaver somniferum HOM05D003252 ORTHO05D003640 1.2e-08 64.7 234 22.2
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 5.8e-08 62.4 49 59.2
PGR044G0627 Punica granatum HOM05D003252 ORTHO05D003640 2.2e-07 60.5 104 33.7
QL02p060735 Quercus lobata HOM05D003252 ORTHO05D003640 2.9e-07 60.1 99 35.4
Sabra11G0116400 Salix brachista HOM05D003252 ORTHO05D003640 3.8e-07 59.7 111 31.5
Ah.01g023250 Amaranthus hybridus HOM05D003252 ORTHO05D003640 1.1e-06 58.2 226 21.2
QL02p060441 Quercus lobata HOM05D003252 ORTHO05D003640 1.9e-06 57.4 99 34.3
SEGI_09665 Sequoiadendron giganteum HOM05D003252 ORTHO05D003640 9.3e-06 55.1 101 30.7


User provided reference genes

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