Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_7810 Physcomitrium patens HOM05D005999 ORTHO05D003360 8.1e-234 813.9 602 100.0
Pp3c8_14440 Physcomitrium patens HOM05D005999 ORTHO05D003360 2.1e-80 304.3 543 46.8
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 3.5e-11 74.3 317 26.5
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 6.0e-11 73.6 78 50.0
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 7.8e-11 73.2 73 52.1
Dinv08545 Davidia involucrata HOM05D005999 ORTHO05D003360 1.0e-10 72.8 73 50.7
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 3.9e-10 70.9 72 51.4
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 3.9e-10 70.9 72 51.4
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 3.9e-10 70.9 72 52.8
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 5.1e-10 70.5 292 26.7
Duzib187G1063 Durio zibethinus HOM05D005999 ORTHO05D003360 8.7e-10 69.7 72 52.8
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 1.1e-09 69.3 325 26.8
Cpa.g.sc6.319 Carica papaya HOM05D005999 ORTHO05D003360 1.5e-09 68.9 72 51.4
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 1.5e-09 68.9 67 55.2
ATR0661G352 Amborella trichopoda HOM05D005999 ORTHO05D003360 2.5e-09 68.2 73 47.9
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 3.3e-09 67.8 318 26.7
Medtr5g023090 Medicago truncatula HOM05D005999 ORTHO05D003360 3.3e-09 67.8 374 25.7
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 3.3e-09 67.8 314 26.8
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 4.3e-09 67.4 328 26.5
Hma1.2p1_0315F.1_g122640 Hydrangea macrophylla HOM05D005999 ORTHO05D003360 4.3e-09 67.4 73 46.6
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 4.3e-09 67.4 71 47.9
Carub.0008s2845 Capsella rubella HOM05D005999 ORTHO05D003360 5.6e-09 67.0 332 26.8
Eucgr.I02298 Eucalyptus grandis HOM05D005999 ORTHO05D003360 5.6e-09 67.0 70 50.0
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 5.6e-09 67.0 70 48.6
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 7.3e-09 66.6 72 47.2
TAR628G0133 Trochodendron aralioides HOM05D005999 ORTHO05D003360 7.3e-09 66.6 72 48.6
Gohir.A02G174800 Gossypium hirsutum HOM05D005999 ORTHO05D003360 9.6e-09 66.2 319 26.6
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 9.6e-09 66.2 68 51.5
AUR62026216 Chenopodium quinoa HOM05D005999 ORTHO05D003360 1.6e-08 65.5 67 49.3
AUR62026380 Chenopodium quinoa HOM05D005999 ORTHO05D003360 1.6e-08 65.5 67 49.3
COL.COLO4_22501 Corchorus olitorius HOM05D005999 ORTHO05D003360 1.6e-08 65.5 72 47.2
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 1.6e-08 65.5 71 47.9
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 1.6e-08 65.5 71 46.5
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 1.6e-08 65.5 71 46.5
Ah.02g129080 Amaranthus hybridus HOM05D005999 ORTHO05D003360 2.1e-08 65.1 71 46.5
Prupe.7G175600 Prunus persica HOM05D005999 ORTHO05D003360 2.1e-08 65.1 308 26.3
TAR371G0800 Trochodendron aralioides HOM05D007469 ORTHO05D003360 2.1e-08 65.1 56 57.1
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 2.8e-08 64.7 71 46.5
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 2.8e-08 64.7 71 46.5
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 2.8e-08 64.7 326 26.4
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 2.8e-08 64.7 70 50.0
Potri.007G060400 Populus trichocarpa HOM05D005999 ORTHO05D003360 2.8e-08 64.7 73 45.2
Zm00001eb002820 Zea mays HOM05D005999 ORTHO05D003360 2.8e-08 64.7 71 46.5
Glyma.01G161900 Glycine max HOM05D005999 ORTHO05D003360 3.6e-08 64.3 70 48.6
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 3.6e-08 64.3 71 46.5
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 3.6e-08 64.3 71 47.9
AT5G66055 Arabidopsis thaliana HOM05D005999 ORTHO05D003360 4.7e-08 63.9 294 24.8
Psat2g151600 Pisum sativum HOM05D005999 ORTHO05D003360 4.7e-08 63.9 67 50.7
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 6.2e-08 63.5 71 47.9
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 6.2e-08 63.5 71 47.9
CSS0035556 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 8.1e-08 63.2 71 46.5
Nitab4.5_0005409g0010 Nicotiana tabacum HOM05D005999 ORTHO05D003360 8.1e-08 63.2 72 45.8
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 8.1e-08 63.2 71 49.3
TPR.G25134 Trifolium pratense HOM05D005999 ORTHO05D003360 8.1e-08 63.2 72 44.4
vmacro18444 Vaccinium macrocarpon HOM05D005999 ORTHO05D003360 8.1e-08 63.2 71 49.3
CSS0001074 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 1.1e-07 62.8 71 46.5
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 1.1e-07 62.8 72 45.8
PGR119G0821 Punica granatum HOM05D005999 ORTHO05D003360 1.1e-07 62.8 73 46.6
MSTRG.3620 Avicennia marina HOM05D005999 ORTHO05D003360 1.4e-07 62.4 72 45.8
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 1.4e-07 62.4 70 47.1
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 1.4e-07 62.4 70 45.7
QL02p077481 Quercus lobata HOM05D007469 ORTHO05D003360 1.4e-07 62.4 51 58.8
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 1.4e-07 62.4 71 46.5
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 1.4e-07 62.4 71 47.9
BolC9t54096H Brassica oleracea HOM05D005999 ORTHO05D003360 1.8e-07 62.0 302 26.5
Cfa007462 Carpinus fangiana HOM05D007469 ORTHO05D003360 1.8e-07 62.0 53 54.7
CDE05G3499 Ceratophyllum demersum HOM05D005999 ORTHO05D003360 1.8e-07 62.0 273 27.5
DCAR_011582 Daucus carota HOM05D005999 ORTHO05D003360 1.8e-07 62.0 71 47.9
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 1.8e-07 62.0 334 27.8
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 1.8e-07 62.0 88 39.8
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 1.8e-07 62.0 72 44.4
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 1.8e-07 62.0 338 26.3
Cc01_g06010 Coffea canephora HOM05D005999 ORTHO05D003360 2.4e-07 61.6 72 44.4
Dinv35031 Davidia involucrata HOM05D000028 ORTHO05D000390 2.4e-07 61.6 56 51.8
Glyma.11G081900 Glycine max HOM05D005999 ORTHO05D003360 2.4e-07 61.6 49 57.1
MELO3C007947.2 Cucumis melo HOM05D005999 ORTHO05D003360 3.1e-07 61.2 273 24.9
MBI14_g12788_MAGBIO Magnolia biondii HOM05D007469 ORTHO05D003360 3.1e-07 61.2 46 63.0
Aqoxy5G01092 Aquilegia oxysepala HOM05D005999 ORTHO05D002169 4.0e-07 60.8 67 47.8
BcaC04g23109 Brassica carinata HOM05D005999 ORTHO05D003360 4.0e-07 60.8 229 27.1
CiPaw.03G035300 Carya illinoinensis HOM05D007469 ORTHO05D003360 4.0e-07 60.8 53 54.7
ClCG01G020640 Citrullus lanatus HOM05D005999 ORTHO05D003360 4.0e-07 60.8 360 25.0
Haze_14632 Corylus avellana HOM05D007469 ORTHO05D003360 4.0e-07 60.8 53 56.6
Lalb_Chr08g0233251 Lupinus albus HOM05D007469 ORTHO05D003360 4.0e-07 60.8 64 50.0
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 4.0e-07 60.8 69 43.5
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 4.0e-07 60.8 71 46.5
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 4.0e-07 60.8 67 49.3
GSVIVG01032525001 Vitis vinifera HOM05D007469 ORTHO05D003360 4.0e-07 60.8 56 53.6
PGR083G2689 Punica granatum HOM05D007469 ORTHO05D003360 5.2e-07 60.5 52 51.9
Rhsim10G0026300 Rhododendron simsii HOM05D007469 ORTHO05D003360 5.2e-07 60.5 72 45.8
Rhsim10G0026800 Rhododendron simsii HOM05D007469 ORTHO05D003360 5.2e-07 60.5 72 45.8
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 6.9e-07 60.1 49 57.1
DCAR_013974 Daucus carota HOM05D007469 ORTHO05D003360 6.9e-07 60.1 53 54.7
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 6.9e-07 60.1 72 47.2
Nn4g22877 Nelumbo nucifera HOM05D007469 ORTHO05D003360 6.9e-07 60.1 50 56.0
CAN.G865.12 Capsicum annuum HOM05D005999 ORTHO05D003360 9.0e-07 59.7 73 42.5
Ca_24948_v3 Cicer arietinum L. HOM05D005999 ORTHO05D003360 9.0e-07 59.7 64 50.0
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 9.0e-07 59.7 71 47.9
CANSAT64G0136 Cannabis sativa HOM05D007469 ORTHO05D003360 1.2e-06 59.3 50 58.0
CANSAT64G2834 Cannabis sativa HOM05D007469 ORTHO05D003360 1.2e-06 59.3 50 58.0
Ciclev10013529m.g Citrus clementina HOM05D007469 ORTHO05D003360 1.2e-06 59.3 57 50.9
Cc02_g31090 Coffea canephora HOM05D007469 ORTHO05D003360 1.2e-06 59.3 55 54.5
Oeu047333.1 Olea europaea HOM05D007469 ORTHO05D003360 1.2e-06 59.3 51 56.9
unitig_0.g2798 Utricularia gibba HOM05D007469 ORTHO05D003360 1.2e-06 59.3 63 49.2
EL10Ac6g13337 Beta vulgaris HOM05D005999 ORTHO05D003360 1.5e-06 58.9 278 29.1
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 1.5e-06 58.9 316 24.7
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 1.5e-06 58.9 72 43.1
Glyma.01G161800 Glycine max HOM05D005999 ORTHO05D003360 1.5e-06 58.9 100 34.0
Actinidia28736 Actinidia chinensis HOM05D005999 ORTHO05D003360 2.0e-06 58.5 66 47.0
A09p10170 Brassica napus HOM05D005999 ORTHO05D003360 2.0e-06 58.5 224 26.3
C09p12060 Brassica napus HOM05D005999 ORTHO05D003360 2.0e-06 58.5 229 26.2
Dinv33523 Davidia involucrata HOM05D007469 ORTHO05D003360 2.0e-06 58.5 52 50.0
Actinidia36064 Actinidia chinensis HOM05D007469 ORTHO05D003360 2.6e-06 58.2 59 47.5
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 2.6e-06 58.2 51 51.0
Cpa.g.sc88.45 Carica papaya HOM05D007469 ORTHO05D003360 2.6e-06 58.2 56 50.0
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 2.6e-06 58.2 291 24.1
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 2.6e-06 58.2 62 46.8
Sabra16G0184600 Salix brachista HOM05D007469 ORTHO05D003360 2.6e-06 58.2 56 51.8
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.6e-06 58.2 57 56.1
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 3.4e-06 57.8 224 28.1
AUR62021431 Chenopodium quinoa HOM05D007469 ORTHO05D003360 3.4e-06 57.8 63 47.6
Eucgr.J02176 Eucalyptus grandis HOM05D007469 ORTHO05D003360 3.4e-06 57.8 53 52.8
Lj7C409T15 Lonicera japonica HOM05D007469 ORTHO05D003360 3.4e-06 57.8 56 50.0
Nitab4.5_0001969g0030 Nicotiana tabacum HOM05D007469 ORTHO05D003360 3.4e-06 57.8 51 51.0
Nitab4.5_0004567g0040 Nicotiana tabacum HOM05D007469 ORTHO05D003360 3.4e-06 57.8 54 48.1
Sc18g0006210 Simmondsia chinensis HOM05D007469 ORTHO05D003360 3.4e-06 57.8 56 51.8
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 3.4e-06 57.8 49 53.1
EL10Ac8g18402 Beta vulgaris HOM05D007469 ORTHO05D003360 4.4e-06 57.4 63 44.4
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 4.4e-06 57.4 63 47.6
Manes.15G180348 Manihot esculenta HOM05D007469 ORTHO05D003360 4.4e-06 57.4 56 51.8
Hund20037 Selenicereus undatus HOM05D007469 ORTHO05D009499 4.4e-06 57.4 56 48.2
HanXRQChr09g0257041 Helianthus annuus HOM05D005999 ORTHO05D003360 5.8e-06 57.0 262 25.2
vmacro05796 Vaccinium macrocarpon HOM05D007469 ORTHO05D003360 5.8e-06 57.0 43 58.1
Aqoxy3G00905 Aquilegia oxysepala HOM05D007469 ORTHO05D003360 7.6e-06 56.6 66 48.5
Potri.001G295200 Populus trichocarpa HOM05D007469 ORTHO05D003360 7.6e-06 56.6 56 50.0
CSS0038198 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 9.9e-06 56.2 56 44.6
CSS0050487 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 9.9e-06 56.2 56 44.6
CAN.G824.9 Capsicum annuum HOM05D007469 ORTHO05D003360 9.9e-06 56.2 64 45.3
SGA_v2.0_scaffold58G20568 Striga asiatica HOM05D005999 ORTHO05D003360 9.9e-06 56.2 72 43.1


User provided reference genes

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