Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 7.7e-145 517.3 295 100.0
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 6.4e-91 338.2 298 66.4
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 8.1e-86 321.2 289 60.2
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 4.4e-84 315.5 292 63.0
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 9.9e-84 314.3 284 68.7
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 3.2e-82 309.3 293 65.9
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 4.2e-82 308.9 295 65.8
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 1.2e-81 307.4 295 65.4
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 2.7e-81 306.2 292 64.4
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 6.0e-81 305.1 292 61.3
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 6.0e-81 305.1 288 67.0
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 2.3e-80 303.1 312 60.9
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 3.0e-80 302.8 289 57.1
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 3.0e-80 302.8 303 60.4
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.5e-79 299.7 306 56.9
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 1.2e-78 297.4 303 61.7
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 1.2e-78 297.4 303 60.7
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 2.8e-78 296.2 288 62.5
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.6e-78 295.8 303 60.7
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 3.6e-78 295.8 287 58.9
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 6.2e-78 295.0 292 61.3
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 6.2e-78 295.0 306 55.9
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 1.8e-77 293.5 304 59.5
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.8e-77 293.5 278 62.6
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 1.8e-77 293.5 304 58.9
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 2.4e-77 293.1 289 64.0
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 2.4e-77 293.1 289 64.0
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 4.0e-77 292.4 297 56.9
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 6.9e-77 291.6 303 62.7
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 9.0e-77 291.2 267 59.6
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 1.5e-76 290.4 302 59.9
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.5e-76 290.4 284 55.3
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 2.0e-76 290.0 298 62.8
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.0e-76 290.0 275 67.6
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 5.8e-76 288.5 287 65.2
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 7.6e-76 288.1 301 58.5
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.7e-75 287.0 287 56.4
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 1.7e-75 287.0 296 58.4
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 2.2e-75 286.6 303 61.7
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 4.9e-75 285.4 286 64.0
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 6.4e-75 285.0 281 65.1
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 8.4e-75 284.6 288 54.5
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 8.4e-75 284.6 304 55.3
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 8.4e-75 284.6 277 64.6
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 1.9e-74 283.5 278 65.5
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 9.3e-74 281.2 297 57.9
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 2.7e-73 279.6 249 68.3
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 3.5e-73 279.3 281 60.9
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 4.6e-73 278.9 296 58.8
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 2.3e-72 276.6 284 58.1
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 2.3e-72 276.6 303 60.1
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 5.1e-72 275.4 300 60.7
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 8.7e-72 274.6 290 62.4
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 3.3e-71 272.7 291 56.7
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 7.3e-71 271.6 305 59.0
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 7.3e-71 271.6 304 56.2
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.6e-70 270.4 179 73.7
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 2.1e-70 270.0 286 58.7
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 4.8e-70 268.9 304 57.9
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 4.8e-70 268.9 342 54.7
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 8.1e-70 268.1 304 57.2
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 1.4e-69 267.3 273 64.5
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 3.1e-69 266.2 287 60.3
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 6.9e-69 265.0 292 57.9
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 1.5e-68 263.8 181 71.8
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 1.5e-68 263.8 267 52.4
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.6e-68 263.1 292 58.2
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 3.4e-68 262.7 292 58.2
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 2.2e-67 260.0 320 56.6
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 1.1e-66 257.7 332 53.9
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 9.9e-60 234.6 190 65.8
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 2.9e-59 233.0 297 53.9
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 2.5e-58 229.9 220 56.4
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 3.2e-58 229.6 281 50.5
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 9.3e-58 228.0 288 56.6
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 1.6e-57 227.3 304 54.9
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.1e-57 226.9 176 65.3
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.0e-56 224.6 283 56.2
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.5e-55 219.9 304 44.7
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.5e-55 219.9 304 44.7
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 8.2e-54 214.9 302 53.6
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 8.2e-54 214.9 293 52.2
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 2.4e-53 213.4 285 47.0
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 3.4e-52 209.5 289 53.6
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 3.4e-52 209.5 307 50.8
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 4.5e-52 209.1 307 50.5
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 5.8e-52 208.8 291 53.6
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 7.6e-52 208.4 308 47.4
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.3e-51 207.6 310 47.1
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 3.8e-51 206.1 307 45.3
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 3.8e-51 206.1 307 45.3
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 3.8e-51 206.1 307 45.3
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 4.9e-51 205.7 288 52.1
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 6.5e-51 205.3 292 50.0
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.4e-50 204.1 130 76.2
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.4e-50 204.1 284 53.5
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 1.2e-49 201.1 285 51.2
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 1.6e-49 200.7 302 47.0
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 3.5e-49 199.5 287 49.5
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.0e-48 198.0 300 49.3
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 1.8e-48 197.2 294 48.3
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 8.7e-48 194.9 295 48.5
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 9.7e-47 191.4 195 53.8
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 1.3e-46 191.0 295 50.8
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 2.2e-46 190.3 319 41.7
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.1e-45 188.0 176 60.2
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 5.3e-45 185.7 179 53.6
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 5.3e-45 185.7 289 50.9
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 5.3e-45 185.7 289 50.9
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 6.9e-45 185.3 181 55.8
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 4.5e-44 182.6 304 44.4
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.0e-43 181.4 137 69.3
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 7.9e-41 171.8 139 65.5
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 1.2e-33 147.9 230 43.5
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.3e-32 143.7 144 55.6
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.7e-32 142.1 163 50.3
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 4.2e-26 122.9 204 41.7
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 5.2e-24 115.9 161 60.9
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 6.7e-24 115.5 79 64.6
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 5.7e-23 112.5 66 81.8
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 2.5e-18 97.1 98 54.1
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.6e-17 94.4 67 71.6
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 4.7e-17 92.8 94 54.3
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 4.7e-17 92.8 94 54.3
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 6.3e-14 82.4 48 81.2
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 2.4e-13 80.5 64 62.5
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 1.2e-12 78.2 65 60.0
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 1.5e-10 71.2 129 48.8
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.4e-08 64.7 101 42.6
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.8e-08 64.3 105 41.9
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 4.0e-08 63.2 59 57.6
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 8.8e-08 62.0 105 41.0
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 2.0e-07 60.8 109 38.5
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 4.4e-07 59.7 128 34.4
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 7.5e-07 58.9 48 52.1
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 9.8e-07 58.5 109 36.7
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 9.8e-07 58.5 63 55.6
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 1.7e-06 57.8 98 38.8
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 2.2e-06 57.4 89 33.7
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 2.2e-06 57.4 116 35.3
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 2.2e-06 57.4 117 33.3
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 2.2e-06 57.4 95 37.9
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 2.8e-06 57.0 56 51.8
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 3.7e-06 56.6 109 35.8
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 3.7e-06 56.6 109 37.6
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 4.8e-06 56.2 94 42.6
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 4.8e-06 56.2 42 59.5
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 4.8e-06 56.2 29 79.3
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 4.8e-06 56.2 77 40.3
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 4.8e-06 56.2 116 35.3
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 4.8e-06 56.2 42 59.5
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 6.3e-06 55.8 115 37.4
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 6.3e-06 55.8 123 33.3
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 6.3e-06 55.8 56 51.8
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 6.3e-06 55.8 56 60.7
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 6.3e-06 55.8 120 35.0
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 8.3e-06 55.5 59 47.5
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 8.3e-06 55.5 42 59.5
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 8.3e-06 55.5 51 51.0
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 8.3e-06 55.5 51 51.0
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 8.3e-06 55.5 42 59.5
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 8.3e-06 55.5 120 35.8
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 8.3e-06 55.5 42 59.5


User provided reference genes

Program Settings