Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_640 Physcomitrium patens HOM05D003512 ORTHO05D004013 5.3e-102 374.4 194 100.0
Pp3c23_22230 Physcomitrium patens HOM05D003512 ORTHO05D004013 4.3e-51 205.3 135 79.3
Pp3c24_20960 Physcomitrium patens HOM05D003512 ORTHO05D004013 1.7e-47 193.4 133 79.7
AagrBONN_evm.TU.Sc2ySwM_344.4760 Anthoceros agrestis HOM05D003512 ORTHO05D004013 6.4e-31 138.3 131 61.8
DCAR_012618 Daucus carota HOM05D003512 ORTHO05D004013 4.3e-27 125.6 144 54.9
Aqoxy5G00078 Aquilegia oxysepala HOM05D003512 ORTHO05D004013 2.1e-26 123.2 136 56.6
RcHm_v2.0_Chr6g0285621 Rosa chinensis HOM05D003512 ORTHO05D004013 4.7e-26 122.1 149 53.7
FAN27G0931 Fragaria x ananassa HOM05D003512 ORTHO05D004013 3.1e-25 119.4 138 53.6
FAN15G0220 Fragaria x ananassa HOM05D003512 ORTHO05D004013 4.0e-25 119.0 181 45.3
Solyc09g063130.3 Solanum lycopersicum HOM05D003512 ORTHO05D004013 5.2e-25 118.6 145 49.7
Sopen09g025300 Solanum pennellii HOM05D003512 ORTHO05D004013 5.2e-25 118.6 145 49.7
FvH4_2g19960 Fragaria vesca HOM05D003512 ORTHO05D004013 6.8e-25 118.2 181 44.8
Oeu047197.1 Olea europaea HOM05D003512 ORTHO05D004013 6.8e-25 118.2 135 50.4
QL09p043416 Quercus lobata HOM05D003512 ORTHO05D004013 6.8e-25 118.2 139 54.7
HanXRQChr13g0408961 Helianthus annuus HOM05D003512 ORTHO05D004013 1.5e-24 117.1 143 51.7
Lalb_Chr06g0170911 Lupinus albus HOM05D003512 ORTHO05D004013 2.0e-24 116.7 140 51.4
Medtr7g099390 Medicago truncatula HOM05D003512 ORTHO05D004013 3.4e-24 115.9 140 51.4
Ca_08765_v3 Cicer arietinum L. HOM05D003512 ORTHO05D004013 9.9e-24 114.4 140 52.1
PGSC0003DMG400022022 Solanum tuberosum HOM05D003512 ORTHO05D004013 9.9e-24 114.4 146 47.9
ECA236G1700 Erigeron canadensis HOM05D003512 ORTHO05D004013 1.3e-23 114.0 140 50.7
Oeu026192.1 Olea europaea HOM05D003512 ORTHO05D004013 1.3e-23 114.0 134 52.2
Peaxi162Scf00043g00067 Petunia axillaris HOM05D003512 ORTHO05D004013 2.9e-23 112.8 145 48.3
Rhsim13G0041600 Rhododendron simsii HOM05D003512 ORTHO05D004013 2.9e-23 112.8 134 51.5
Ca_09628_v3 Cicer arietinum L. HOM05D003512 ORTHO05D004013 4.9e-23 112.1 139 48.2
Lj5g0026666 Lotus japonicus HOM05D003512 ORTHO05D004013 4.9e-23 112.1 137 54.0
Phvul.007G155500 Phaseolus vulgaris HOM05D003512 ORTHO05D004013 4.9e-23 112.1 140 50.0
Lalb_Chr25g0289731 Lupinus albus HOM05D003512 ORTHO05D004013 6.4e-23 111.7 149 48.3
Manes.12G040000 Manihot esculenta HOM05D003512 ORTHO05D004013 6.4e-23 111.7 153 50.3
Medtr1g069235 Medicago truncatula HOM05D003512 ORTHO05D004013 1.1e-22 110.9 149 47.7
VMungo0720G2276 Vigna mungo HOM05D003512 ORTHO05D004013 1.1e-22 110.9 141 49.6
Eucgr.B02162 Eucalyptus grandis HOM05D003512 ORTHO05D004013 1.4e-22 110.5 100 63.0
MD05G1183900 Malus domestica HOM05D003512 ORTHO05D004013 1.4e-22 110.5 150 48.7
Sp7g26760 Schrenkiella parvula HOM05D003512 ORTHO05D004013 1.4e-22 110.5 144 51.4
TWI34G1801 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 1.4e-22 110.5 101 58.4
HanXRQChr10g0287201 Helianthus annuus HOM05D003512 ORTHO05D004013 1.9e-22 110.2 136 49.3
PGR142G3520 Punica granatum HOM05D003512 ORTHO05D004013 1.9e-22 110.2 147 47.6
Zm00001eb096870 Zea mays HOM05D003512 ORTHO05D004013 1.9e-22 110.2 142 49.3
A01p09160 Brassica napus HOM05D003512 ORTHO05D004013 2.4e-22 109.8 145 52.4
C01p10750 Brassica napus HOM05D003512 ORTHO05D004013 2.4e-22 109.8 145 53.1
BolC1t01034H Brassica oleracea HOM05D003512 ORTHO05D004013 2.4e-22 109.8 145 53.1
Phvul.008G133700 Phaseolus vulgaris HOM05D003512 ORTHO05D004013 4.1e-22 109.0 140 48.6
Sed0015250 Sechium edule HOM05D003512 ORTHO05D004013 5.4e-22 108.6 133 51.1
vmacro02722 Vaccinium macrocarpon HOM05D003512 ORTHO05D004013 5.4e-22 108.6 130 50.0
arahy.Tifrunner.gnm1.ann1.QW0L8Q Arachis hypogaea HOM05D003512 ORTHO05D004013 7.1e-22 108.2 143 48.3
TWI23G0432 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 7.1e-22 108.2 144 53.5
BraA01t00862Z Brassica rapa HOM05D003512 ORTHO05D004013 9.2e-22 107.8 145 52.4
BcaNung07172 Brassica carinata HOM05D003512 ORTHO05D004013 1.2e-21 107.5 145 48.3
MD10G1171800 Malus domestica HOM05D003512 ORTHO05D004013 1.2e-21 107.5 145 47.6
Sp3g33490 Schrenkiella parvula HOM05D003512 ORTHO05D004013 1.2e-21 107.5 150 44.7
Aa31LG2G21620 Aethionema arabicum HOM05D003512 ORTHO05D004013 1.6e-21 107.1 140 48.6
BcaB03g12587 Brassica carinata HOM05D003512 ORTHO05D004013 1.6e-21 107.1 144 50.0
COL.COLO4_36321 Corchorus olitorius HOM05D003512 ORTHO05D004013 1.6e-21 107.1 148 49.3
Nitab4.5_0004777g0040 Nicotiana tabacum HOM05D003512 ORTHO05D004013 2.1e-21 106.7 151 47.0
CDE09G0441 Ceratophyllum demersum HOM05D003512 ORTHO05D004013 2.7e-21 106.3 134 50.0
Cre10.g420350 Chlamydomonas reinhardtii HOM05D003512 ORTHO05D004013 2.7e-21 106.3 91 64.8
Zm00001eb306070 Zea mays HOM05D003512 ORTHO05D004013 2.7e-21 106.3 145 48.3
Lsat_1_v5_gn_8_90440 Lactuca sativa HOM05D003512 ORTHO05D004013 4.6e-21 105.5 140 48.6
Lalb_Chr21g0314191 Lupinus albus HOM05D003512 ORTHO05D004013 4.6e-21 105.5 151 47.0
Potri.002G253800 Populus trichocarpa HOM05D003512 ORTHO05D004013 4.6e-21 105.5 147 49.0
Hund18341 Selenicereus undatus HOM05D003512 ORTHO05D004013 4.6e-21 105.5 112 51.8
HanXRQChr15g0468101 Helianthus annuus HOM05D003512 ORTHO05D004013 6.0e-21 105.1 144 45.8
SMO201G0191 Selaginella moellendorffii HOM05D003512 ORTHO05D004013 6.0e-21 105.1 79 65.8
CARHR236540 Cardamine hirsuta HOM05D003512 ORTHO05D004013 7.8e-21 104.8 140 50.0
BcaNung01368 Brassica carinata HOM05D003512 ORTHO05D004013 1.0e-20 104.4 145 51.7
Migut.D00498 Erythranthe guttata HOM05D003512 ORTHO05D004013 1.0e-20 104.4 105 57.1
Os07g0435300 Oryza sativa ssp. japonica HOM05D003512 ORTHO05D004013 1.0e-20 104.4 67 71.6
Peaxi162Scf00517g00118 Petunia axillaris HOM05D003512 ORTHO05D004013 1.0e-20 104.4 77 66.2
CARHR110760 Cardamine hirsuta HOM05D003512 ORTHO05D004013 1.3e-20 104.0 145 44.8
COL.COLO4_07003 Corchorus olitorius HOM05D003512 ORTHO05D004013 1.3e-20 104.0 85 63.5
Mapoly0061s0118 Marchantia polymorpha HOM05D003512 ORTHO05D004013 1.3e-20 104.0 138 47.8
Duzib138G0098 Durio zibethinus HOM05D003512 ORTHO05D004013 1.7e-20 103.6 67 71.6
Lalb_Chr02g0152921 Lupinus albus HOM05D003512 ORTHO05D004013 1.7e-20 103.6 158 44.9
Carub.0007s1189 Capsella rubella HOM05D003512 ORTHO05D004013 2.3e-20 103.2 143 48.3
TWI32G0368 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 2.3e-20 103.2 84 64.3
Carub.0003s3459 Capsella rubella HOM05D003512 ORTHO05D004013 3.0e-20 102.8 151 42.4
CAN.G771.48 Capsicum annuum HOM05D003512 ORTHO05D004013 3.0e-20 102.8 77 63.6
PGSC0003DMG400020154 Solanum tuberosum HOM05D003512 ORTHO05D004013 3.0e-20 102.8 73 67.1
THA.LOC104814542 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 3.0e-20 102.8 142 45.1
Aa31LG8G17250 Aethionema arabicum HOM05D003512 ORTHO05D004013 3.9e-20 102.4 112 51.8
AL7G23750 Arabidopsis lyrata HOM05D003512 ORTHO05D004013 3.9e-20 102.4 145 49.0
Glyma.10G042000 Glycine max HOM05D003512 ORTHO05D004013 3.9e-20 102.4 147 46.9
MCO05G318 Micromonas commoda HOM05D003512 ORTHO05D004013 3.9e-20 102.4 94 57.4
Haze_24736 Corylus avellana HOM05D003512 ORTHO05D004013 5.1e-20 102.1 146 47.9
DCAR_018535 Daucus carota HOM05D003512 ORTHO05D004013 5.1e-20 102.1 141 48.9
Oeu017338.1 Olea europaea HOM05D003512 ORTHO05D004013 5.1e-20 102.1 108 54.6
Prupe.8G210000 Prunus persica HOM05D003512 ORTHO05D004013 5.1e-20 102.1 81 64.2
Thecc.05G265600 Theobroma cacao HOM05D003512 ORTHO05D004013 5.1e-20 102.1 83 61.4
TWI59G0010 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 5.1e-20 102.1 138 47.8
ClCG11G010230 Citrullus lanatus HOM05D003512 ORTHO05D004013 6.6e-20 101.7 70 70.0
Glyma.13G129400 Glycine max HOM05D003512 ORTHO05D004013 6.6e-20 101.7 141 46.1
TAR365G0283 Trochodendron aralioides HOM05D003512 ORTHO05D004013 6.6e-20 101.7 65 72.3
Ciclev10022750m.g Citrus clementina HOM05D003512 ORTHO05D004013 8.6e-20 101.3 82 64.6
Glyma.13G129500 Glycine max HOM05D003512 ORTHO05D004013 8.6e-20 101.3 141 48.2
Gohir.A07G202600 Gossypium hirsutum HOM05D003512 ORTHO05D004013 8.6e-20 101.3 67 70.1
Gohir.D07G208800 Gossypium hirsutum HOM05D003512 ORTHO05D004013 8.6e-20 101.3 67 70.1
Nitab4.5_0004333g0020 Nicotiana tabacum HOM05D003512 ORTHO05D004013 8.6e-20 101.3 74 64.9
HPP92_027295 Vanilla planifolia HOM05D003512 ORTHO05D004013 8.6e-20 101.3 61 73.8
GSVIVG01028481001 Vitis vinifera HOM05D003512 ORTHO05D004013 8.6e-20 101.3 105 57.1
Cpa.g.sc8.213 Carica papaya HOM05D003512 ORTHO05D004013 1.1e-19 100.9 76 65.8
CDE02G1659 Ceratophyllum demersum HOM05D003512 ORTHO05D004013 1.1e-19 100.9 134 47.8
Glyma.10G042100 Glycine max HOM05D003512 ORTHO05D004013 1.1e-19 100.9 141 47.5
TPR.G20608 Trifolium pratense HOM05D003512 ORTHO05D004013 1.1e-19 100.9 63 73.0
CANSAT01G3044 Cannabis sativa HOM05D003512 ORTHO05D004013 1.5e-19 100.5 81 63.0
CBR_g17684 Chara braunii HOM05D003512 ORTHO05D004013 1.5e-19 100.5 65 75.4
Duzib211G0535 Durio zibethinus HOM05D003512 ORTHO05D004013 1.5e-19 100.5 62 74.2
Sed0000934 Sechium edule HOM05D003512 ORTHO05D004013 1.5e-19 100.5 141 48.2
arahy.Tifrunner.gnm1.ann1.HB1P9N Arachis hypogaea HOM05D003512 ORTHO05D004013 1.9e-19 100.1 150 44.7
Sabra02G0192900 Salix brachista HOM05D003512 ORTHO05D004013 1.9e-19 100.1 162 45.1
AT4G28750 Arabidopsis thaliana HOM05D003512 ORTHO05D004013 2.5e-19 99.8 145 46.2
AUR62025395 Chenopodium quinoa HOM05D003512 ORTHO05D004013 2.5e-19 99.8 88 54.5
Eucgr.H00828 Eucalyptus grandis HOM05D003512 ORTHO05D004013 2.5e-19 99.8 63 71.4
Thhalv10002106m.g Eutrema salsugineum HOM05D003512 ORTHO05D004013 2.5e-19 99.8 154 40.3
Gohir.D08G056700 Gossypium hirsutum HOM05D003512 ORTHO05D004013 2.5e-19 99.8 67 68.7
Gorai.004G057800 Gossypium raimondii HOM05D003512 ORTHO05D004013 2.5e-19 99.8 67 68.7
PSO764G0144 Papaver somniferum HOM05D003512 ORTHO05D004013 2.5e-19 99.8 80 63.8
PSO832G4467 Papaver somniferum HOM05D003512 ORTHO05D004013 2.5e-19 99.8 80 63.8
arahy.Tifrunner.gnm1.ann1.110G34 Arachis hypogaea HOM05D003512 ORTHO05D004013 3.3e-19 99.4 157 44.6
CsaV3_2G010090 Cucumis sativus L. HOM05D003512 ORTHO05D004013 3.3e-19 99.4 74 64.9
Dinv19249 Davidia involucrata HOM05D003512 ORTHO05D004013 3.3e-19 99.4 80 62.5
Sopen06g035100 Solanum pennellii HOM05D003512 ORTHO05D004013 3.3e-19 99.4 137 46.0
THA.LOC104820062 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 3.3e-19 99.4 67 68.7
arahy.Tifrunner.gnm1.ann1.PI6GK2 Arachis hypogaea HOM05D003512 ORTHO05D004013 4.3e-19 99.0 150 44.7
CiPaw.03G273300 Carya illinoinensis HOM05D003512 ORTHO05D004013 4.3e-19 99.0 78 65.4
Gohir.A08G046200 Gossypium hirsutum HOM05D003512 ORTHO05D004013 4.3e-19 99.0 67 68.7
arahy.Tifrunner.gnm1.ann1.TN6DUA Arachis hypogaea HOM05D003512 ORTHO05D004013 5.6e-19 98.6 63 69.8
BcaC07g38359 Brassica carinata HOM05D003512 ORTHO05D004013 5.6e-19 98.6 145 46.9
C08p11070 Brassica napus HOM05D003512 ORTHO05D004013 5.6e-19 98.6 145 46.9
Gohir.A11G135000 Gossypium hirsutum HOM05D003512 ORTHO05D004013 5.6e-19 98.6 62 72.6
Gohir.D11G141200 Gossypium hirsutum HOM05D003512 ORTHO05D004013 5.6e-19 98.6 62 72.6
Gorai.001G235800 Gossypium raimondii HOM05D003512 ORTHO05D004013 5.6e-19 98.6 155 44.5
Gorai.007G151500 Gossypium raimondii HOM05D003512 ORTHO05D004013 5.6e-19 98.6 62 72.6
BolC8t48776H Brassica oleracea HOM05D003512 ORTHO05D004013 7.3e-19 98.2 145 46.2
vmacro19972 Vaccinium macrocarpon HOM05D003512 ORTHO05D004013 7.3e-19 98.2 67 67.2
FAN24G0321 Fragaria x ananassa HOM05D003512 ORTHO05D004013 9.6e-19 97.8 223 35.9
SEGI_17443 Sequoiadendron giganteum HOM05D003512 ORTHO05D004013 9.6e-19 97.8 70 68.6
ATR0787G081 Amborella trichopoda HOM05D003512 ORTHO05D004013 1.2e-18 97.4 125 48.8
A08p19920 Brassica napus HOM05D003512 ORTHO05D004013 1.2e-18 97.4 142 45.1
BraA08t33949Z Brassica rapa HOM05D003512 ORTHO05D004013 1.2e-18 97.4 142 45.1
CSS0050291 Camellia sinensis var. sinensis HOM05D003512 ORTHO05D004013 1.2e-18 97.4 65 69.2
HanXRQChr11g0327281 Helianthus annuus HOM05D003512 ORTHO05D004013 1.2e-18 97.4 151 43.0
Rhsim05G0169700 Rhododendron simsii HOM05D003512 ORTHO05D004013 1.2e-18 97.4 83 60.2
Ah.08g213830 Amaranthus hybridus HOM05D003512 ORTHO05D004013 1.6e-18 97.1 124 45.2
CiPaw.04G192200 Carya illinoinensis HOM05D003512 ORTHO05D004013 1.6e-18 97.1 59 74.6
ECA247G0853 Erigeron canadensis HOM05D003512 ORTHO05D004013 1.6e-18 97.1 140 47.9
Oeu039643.2 Olea europaea HOM05D003512 ORTHO05D004013 1.6e-18 97.1 65 67.7
Solyc06g083680.3 Solanum lycopersicum HOM05D003512 ORTHO05D004013 1.6e-18 97.1 136 45.6
arahy.Tifrunner.gnm1.ann1.DHZ2RQ Arachis hypogaea HOM05D003512 ORTHO05D004013 2.1e-18 96.7 148 44.6
Duzib133G0561 Durio zibethinus HOM05D003512 ORTHO05D004013 2.1e-18 96.7 143 47.6
TAR362G0114 Trochodendron aralioides HOM05D003512 ORTHO05D004013 2.1e-18 96.7 62 69.4
MSTRG.21447 Avicennia marina HOM05D003512 ORTHO05D004013 2.8e-18 96.3 82 59.8
Manes.13G042400 Manihot esculenta HOM05D003512 ORTHO05D004013 3.6e-18 95.9 144 46.5
THA.LOC104804030 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 3.6e-18 95.9 149 42.3
Migut.N02242 Erythranthe guttata HOM05D003512 ORTHO05D004013 4.7e-18 95.5 143 47.6
Hma1.2p1_0123F.1_g058160 Hydrangea macrophylla HOM05D003512 ORTHO05D004013 4.7e-18 95.5 146 43.8
SalBow6G4606 Salvia bowleyana HOM05D003512 ORTHO05D004013 4.7e-18 95.5 61 73.8
Atru.chr5.1920 Acer truncatum HOM05D003512 ORTHO05D004013 8.1e-18 94.7 146 43.2
AT2G20260 Arabidopsis thaliana HOM05D003512 ORTHO05D004013 8.1e-18 94.7 151 43.0
BcaC06g32605 Brassica carinata HOM05D003512 ORTHO05D004013 8.1e-18 94.7 144 44.4
Actinidia30108 Actinidia chinensis HOM05D003512 ORTHO05D004013 1.1e-17 94.4 90 55.6
Dinv43039 Davidia involucrata HOM05D003512 ORTHO05D004013 1.1e-17 94.4 61 68.9
Thecc.01G245400 Theobroma cacao HOM05D003512 ORTHO05D004013 1.1e-17 94.4 141 43.3
unitig_22.g6316 Utricularia gibba HOM05D003512 ORTHO05D004013 1.4e-17 94.0 143 42.0
Ah.15g093440 Amaranthus hybridus HOM05D003512 ORTHO05D004013 2.4e-17 93.2 76 60.5
Lsat_1_v5_gn_2_15600 Lactuca sativa HOM05D003512 ORTHO05D004013 2.4e-17 93.2 145 44.8
Lsat_1_v5_gn_9_12001 Lactuca sativa HOM05D003512 ORTHO05D004013 2.4e-17 93.2 60 70.0
Hund21755 Selenicereus undatus HOM05D003512 ORTHO05D004013 4.0e-17 92.4 128 46.9
CSS0026330 Camellia sinensis var. sinensis HOM05D003512 ORTHO05D004013 5.2e-17 92.0 86 55.8
Cc01_g17500 Coffea canephora HOM05D003512 ORTHO05D004013 6.9e-17 91.7 142 43.7
unitig_85.g27272 Utricularia gibba HOM05D003512 ORTHO05D004013 8.9e-17 91.3 140 38.6
PRCOL_00005723 Prasinoderma coloniale HOM05D003512 ORTHO05D004013 1.2e-16 90.9 58 74.1
unitig_699.g19325 Utricularia gibba HOM05D003512 ORTHO05D004013 4.4e-16 89.0 140 42.1
Nitab4.5_0001557g0070 Nicotiana tabacum HOM05D003512 ORTHO05D004013 1.7e-15 87.0 138 42.0
Nitab4.5_0000385g0230 Nicotiana tabacum HOM05D003512 ORTHO05D004013 2.2e-15 86.7 58 69.0
SGA_v2.0_scaffold1G00682 Striga asiatica HOM05D003512 ORTHO05D004013 3.8e-15 85.9 73 58.9
AUR62008851 Chenopodium quinoa HOM05D003512 ORTHO05D004013 8.4e-15 84.7 57 64.9
HanXRQChr01g0014791 Helianthus annuus HOM05D003512 ORTHO05D004013 4.2e-14 82.4 53 67.9
AL3G47830 Arabidopsis lyrata HOM05D003512 ORTHO05D004013 3.5e-13 79.3 182 36.8
CAN.G311.8 Capsicum annuum HOM05D003512 ORTHO05D004013 1.3e-12 77.4 142 38.7
Prupe.2G015600 Prunus persica HOM05D003512 ORTHO05D004013 1.7e-12 77.0 48 72.9
Nn3g19853 Nelumbo nucifera HOM05D003512 ORTHO05D004013 1.1e-11 74.3 140 41.4
Actinidia37567 Actinidia chinensis HOM05D003512 ORTHO05D004013 5.8e-08 62.0 39 71.8
Thhalv10026332m.g Eutrema salsugineum HOM05D003512 ORTHO05D004013 2.2e-07 60.1 129 36.4


User provided reference genes

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