Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_6200 Physcomitrium patens HOM05D003862 ORTHO05D004398 2.3e-47 191.8 91 100.0
Pp3c24_15930 Physcomitrium patens HOM05D003862 ORTHO05D004398 2.7e-40 168.3 91 90.1
AagrBONN_evm.TU.Sc2ySwM_368.1516 Anthoceros agrestis HOM05D003862 ORTHO05D004398 2.0e-35 152.1 91 80.2
Mapoly0020s0168 Marchantia polymorpha HOM05D003862 ORTHO05D004398 4.5e-35 151.0 87 81.6
Migut.D01636 Erythranthe guttata HOM05D003862 ORTHO05D004398 1.4e-33 146.0 87 80.5
Migut.D00467 Erythranthe guttata HOM05D003862 ORTHO05D004398 5.5e-33 144.1 87 80.5
GSVIVG01024961001 Vitis vinifera HOM05D003862 ORTHO05D004398 2.1e-32 142.1 87 78.2
CSS0028919 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 2.7e-32 141.7 87 77.0
CSS0038231 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 2.7e-32 141.7 87 77.0
Oeu014415.1 Olea europaea HOM05D003862 ORTHO05D004398 2.7e-32 141.7 87 77.0
EL10Ac5g11591 Beta vulgaris HOM05D003862 ORTHO05D004398 3.5e-32 141.4 87 75.9
CDE07G2069 Ceratophyllum demersum HOM05D003862 ORTHO05D004398 3.5e-32 141.4 87 78.2
unitig_21.g20465 Utricularia gibba HOM05D003164 ORTHO05D003575 3.5e-32 141.4 86 75.6
unitig_744.g24379 Utricularia gibba HOM05D003862 ORTHO05D004398 3.5e-32 141.4 87 74.7
MBI05_g22042_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 6.0e-32 140.6 87 75.9
Oeu032100.1 Olea europaea HOM05D003862 ORTHO05D004398 6.0e-32 140.6 87 75.9
PSO063G5647 Papaver somniferum HOM05D003862 ORTHO05D004398 6.0e-32 140.6 86 75.6
PSO339G2698 Papaver somniferum HOM05D003862 ORTHO05D004398 6.0e-32 140.6 86 75.6
PSO384G2795 Papaver somniferum HOM05D003862 ORTHO05D004398 6.0e-32 140.6 86 75.6
SalBow5G2575 Salvia bowleyana HOM05D003862 ORTHO05D004398 6.0e-32 140.6 87 75.9
Cc10_g12100 Coffea canephora HOM05D003862 ORTHO05D004398 7.9e-32 140.2 87 75.9
Dinv17003 Davidia involucrata HOM05D003862 ORTHO05D004398 7.9e-32 140.2 87 77.0
Dinv42952 Davidia involucrata HOM05D003862 ORTHO05D004398 7.9e-32 140.2 87 77.0
Dinv43148 Davidia involucrata HOM05D003862 ORTHO05D004398 7.9e-32 140.2 87 77.0
Hma1.2p1_0936F.1_g238710 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 1.3e-31 139.4 87 74.7
Hma1.2p1_1513F.1_g287975 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 1.3e-31 139.4 87 74.7
Peaxi162Scf00330g00415 Petunia axillaris HOM05D003862 ORTHO05D004398 2.3e-31 138.7 87 73.6
Cfa017379 Carpinus fangiana HOM05D003862 ORTHO05D004398 3.9e-31 137.9 88 75.0
Haze_20791 Corylus avellana HOM05D003862 ORTHO05D004398 3.9e-31 137.9 88 75.0
vmacro20157 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 3.9e-31 137.9 87 73.6
CAN.G1195.10 Capsicum annuum HOM05D003862 ORTHO05D004398 5.1e-31 137.5 87 73.6
MD04G1129100 Malus domestica HOM05D003862 ORTHO05D004398 5.1e-31 137.5 91 71.4
Nitab4.5_0000349g0310 Nicotiana tabacum HOM05D003862 ORTHO05D004398 5.1e-31 137.5 87 72.4
Nitab4.5_0001911g0090 Nicotiana tabacum HOM05D003862 ORTHO05D004398 5.1e-31 137.5 87 72.4
Solyc10g086510.2 Solanum lycopersicum HOM05D003862 ORTHO05D004398 5.1e-31 137.5 87 73.6
Sopen10g035890 Solanum pennellii HOM05D003862 ORTHO05D004398 5.1e-31 137.5 87 73.6
PGSC0003DMG400019201 Solanum tuberosum HOM05D003862 ORTHO05D004398 5.1e-31 137.5 87 73.6
HPP92_018126 Vanilla planifolia HOM05D003862 ORTHO05D004398 5.1e-31 137.5 87 77.0
HPP92_018144 Vanilla planifolia HOM05D003862 ORTHO05D004398 5.1e-31 137.5 87 77.0
CiPaw.09G192600 Carya illinoinensis HOM05D003862 ORTHO05D004398 6.7e-31 137.1 88 75.0
AUR62038108 Chenopodium quinoa HOM05D003862 ORTHO05D004398 6.7e-31 137.1 87 73.6
TAR636G2804 Trochodendron aralioides HOM05D003862 ORTHO05D004398 6.7e-31 137.1 87 73.6
Prupe.6G255300 Prunus persica HOM05D003862 ORTHO05D004398 1.1e-30 136.3 91 70.3
Sed0022625 Sechium edule HOM05D003862 ORTHO05D004398 1.1e-30 136.3 88 73.9
DCAR_030095 Daucus carota HOM05D003862 ORTHO05D004398 1.5e-30 136.0 87 72.4
ClCG10G021140 Citrullus lanatus HOM05D003862 ORTHO05D004398 1.9e-30 135.6 88 72.7
Os12g0571200 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 1.9e-30 135.6 87 71.3
AUR62025808 Chenopodium quinoa HOM05D003862 ORTHO05D004398 2.5e-30 135.2 87 72.4
MD12G1141800 Malus domestica HOM05D003862 ORTHO05D004398 3.3e-30 134.8 91 70.3
TAR369G0814 Trochodendron aralioides HOM05D003862 ORTHO05D004398 3.3e-30 134.8 87 73.6
Ah.02g115390 Amaranthus hybridus HOM05D003862 ORTHO05D004398 4.3e-30 134.4 87 71.3
Carub.0005s1283 Capsella rubella HOM05D003862 ORTHO05D004398 4.3e-30 134.4 88 72.7
MELO3C009258.2 Cucumis melo HOM05D003862 ORTHO05D004398 4.3e-30 134.4 88 71.6
CsaV3_3G034900 Cucumis sativus L. HOM05D003862 ORTHO05D004398 4.3e-30 134.4 88 71.6
Sed0018689 Sechium edule HOM05D003862 ORTHO05D004398 4.3e-30 134.4 88 72.7
Gohir.A13G227500 Gossypium hirsutum HOM05D003862 ORTHO05D004398 5.6e-30 134.0 88 72.7
Prupe.6G077400 Prunus persica HOM05D003862 ORTHO05D004398 7.4e-30 133.7 87 72.4
HanXRQChr05g0136091 Helianthus annuus HOM05D003862 ORTHO05D004398 9.6e-30 133.3 86 73.3
MD11G1108200 Malus domestica HOM05D003862 ORTHO05D004398 9.6e-30 133.3 87 72.4
RcHm_v2.0_Chr3g0466561 Rosa chinensis HOM05D003862 ORTHO05D004398 9.6e-30 133.3 91 69.2
Lalb_Chr03g0026631 Lupinus albus HOM05D003862 ORTHO05D004398 1.3e-29 132.9 87 71.3
RcHm_v2.0_Chr5g0064531 Rosa chinensis HOM05D003862 ORTHO05D004398 1.3e-29 132.9 87 72.4
Lsat_1_v5_gn_4_177081 Lactuca sativa HOM05D003862 ORTHO05D004398 1.6e-29 132.5 87 71.3
Lsat_1_v5_gn_5_170681 Lactuca sativa HOM05D003862 ORTHO05D004398 1.6e-29 132.5 87 71.3
AL5G25420 Arabidopsis lyrata HOM05D003862 ORTHO05D004398 2.1e-29 132.1 88 72.7
AT3G46560 Arabidopsis thaliana HOM05D003862 ORTHO05D004398 2.1e-29 132.1 88 71.6
Glyma.11G139400 Glycine max HOM05D003862 ORTHO05D004398 2.1e-29 132.1 88 70.5
Medtr4g063925 Medicago truncatula HOM05D003862 ORTHO05D004398 2.1e-29 132.1 88 71.6
Hund10643 Selenicereus undatus HOM05D003862 ORTHO05D004398 2.1e-29 132.1 87 70.1
GSVIVG01034172001 Vitis vinifera HOM05D003862 ORTHO05D004398 2.1e-29 132.1 87 73.6
Lalb_Chr19g0137831 Lupinus albus HOM05D003862 ORTHO05D004398 2.8e-29 131.7 87 70.1
Cfa011504 Carpinus fangiana HOM05D003862 ORTHO05D004398 3.7e-29 131.3 87 72.4
Glyma.12G063000 Glycine max HOM05D003862 ORTHO05D004398 3.7e-29 131.3 88 70.5
CiPaw.14G068400 Carya illinoinensis HOM05D003862 ORTHO05D004398 4.8e-29 131.0 87 72.4
Thhalv10002743m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 4.8e-29 131.0 88 70.5
Gohir.D13G233100 Gossypium hirsutum HOM05D003862 ORTHO05D004398 4.8e-29 131.0 88 71.6
Gorai.013G263900 Gossypium raimondii HOM05D003862 ORTHO05D004398 4.8e-29 131.0 88 71.6
Cpa.g.sc81.150 Carica papaya HOM05D003862 ORTHO05D004398 6.2e-29 130.6 88 71.6
Phvul.011G064100 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 6.2e-29 130.6 88 69.3
CARHR155240 Cardamine hirsuta HOM05D003862 ORTHO05D004398 8.2e-29 130.2 88 70.5
Ca_19161_v3 Cicer arietinum L. HOM05D003862 ORTHO05D004398 8.2e-29 130.2 88 71.6
Duzib150G0578 Durio zibethinus HOM05D003862 ORTHO05D004398 8.2e-29 130.2 88 71.6
Gohir.D03G125700 Gossypium hirsutum HOM05D003862 ORTHO05D004398 8.2e-29 130.2 88 71.6
Gorai.003G131900 Gossypium raimondii HOM05D003862 ORTHO05D004398 8.2e-29 130.2 88 71.6
Lj3g0018643 Lotus japonicus HOM05D003862 ORTHO05D004398 8.2e-29 130.2 88 70.5
arahy.Tifrunner.gnm1.ann1.PAA8CG Arachis hypogaea HOM05D003862 ORTHO05D004398 1.1e-28 129.8 88 68.2
arahy.Tifrunner.gnm1.ann1.Q4VW5J Arachis hypogaea HOM05D003862 ORTHO05D004398 1.1e-28 129.8 88 68.2
COL.COLO4_18508 Corchorus olitorius HOM05D003862 ORTHO05D004398 1.1e-28 129.8 85 72.9
Thhalv10023780m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 1.1e-28 129.8 88 69.3
Nitab4.5_0006455g0030 Nicotiana tabacum HOM05D003862 ORTHO05D004398 1.1e-28 129.8 87 70.1
Sp2g01740 Schrenkiella parvula HOM05D003862 ORTHO05D004398 1.1e-28 129.8 88 69.3
Duzib168G1372 Durio zibethinus HOM05D003862 ORTHO05D004398 1.4e-28 129.4 88 71.6
Duzib170G0179 Durio zibethinus HOM05D003862 ORTHO05D004398 1.4e-28 129.4 88 71.6
Peaxi162Scf01517g00013 Petunia axillaris HOM05D003862 ORTHO05D004398 1.4e-28 129.4 87 66.7
TWI36G0288 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 1.8e-28 129.0 88 71.6
TWI75G0870 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 1.8e-28 129.0 88 71.6
FvH4_3g36110 Fragaria vesca HOM05D003862 ORTHO05D004398 2.4e-28 128.6 86 69.8
FAN11G3597 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.4e-28 128.6 86 69.8
FAN16G1598 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.4e-28 128.6 86 69.8
FAN21G0907 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.4e-28 128.6 86 69.8
FAN25G1864 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.4e-28 128.6 86 69.8
Gohir.A03G042066 Gossypium hirsutum HOM05D003862 ORTHO05D004398 2.4e-28 128.6 88 70.5
Nitab4.5_0002018g0010 Nicotiana tabacum HOM05D003862 ORTHO05D004398 2.4e-28 128.6 87 69.0
Thecc.09G321500 Theobroma cacao HOM05D003862 ORTHO05D004398 2.4e-28 128.6 88 71.6
PGR119G1270 Punica granatum HOM05D003862 ORTHO05D004398 4.0e-28 127.9 87 71.3
ECA248G1530 Erigeron canadensis HOM05D003862 ORTHO05D004398 6.9e-28 127.1 83 71.1
Aa31sc23G440 Aethionema arabicum HOM05D003862 ORTHO05D004398 9.0e-28 126.7 88 68.2
Carub.0003s2691 Capsella rubella HOM05D003862 ORTHO05D004398 9.0e-28 126.7 88 69.3
FAN02G2377 Fragaria x ananassa HOM05D003862 ORTHO05D004398 9.0e-28 126.7 87 71.3
FAN09G4075 Fragaria x ananassa HOM05D003862 ORTHO05D004398 9.0e-28 126.7 87 71.3
PGR102G0842 Punica granatum HOM05D003862 ORTHO05D004398 9.0e-28 126.7 87 70.1
CANSAT54G2947 Cannabis sativa HOM05D003862 ORTHO05D004398 1.2e-27 126.3 87 70.1
Ciclev10029679m.g Citrus clementina HOM05D003862 ORTHO05D004398 1.5e-27 125.9 88 68.2
THA.LOC104810779 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 2.0e-27 125.6 88 68.2
Sc05g0009640 Simmondsia chinensis HOM05D003862 ORTHO05D004398 2.6e-27 125.2 87 69.0
BcaC04g22454 Brassica carinata HOM05D003862 ORTHO05D004398 3.4e-27 124.8 88 67.0
A09p15900 Brassica napus HOM05D003862 ORTHO05D004398 3.4e-27 124.8 88 67.0
C09p19140 Brassica napus HOM05D003862 ORTHO05D004398 3.4e-27 124.8 88 67.0
BolC9t54821H Brassica oleracea HOM05D003862 ORTHO05D004398 3.4e-27 124.8 88 67.0
BraA09t37226Z Brassica rapa HOM05D003862 ORTHO05D004398 3.4e-27 124.8 88 67.0
Potri.012G039100 Populus trichocarpa HOM05D003862 ORTHO05D004398 3.4e-27 124.8 84 71.4
Sabra12G0027600 Salix brachista HOM05D003862 ORTHO05D004398 3.4e-27 124.8 84 71.4
THA.LOC104799442 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 3.4e-27 124.8 88 68.2
Aa31LG4G15560 Aethionema arabicum HOM05D003862 ORTHO05D004398 4.5e-27 124.4 88 67.0
BcaC02g10413 Brassica carinata HOM05D003862 ORTHO05D004398 4.5e-27 124.4 88 67.0
C04p29160 Brassica napus HOM05D003862 ORTHO05D004398 4.5e-27 124.4 88 67.0
BolC4t24450H Brassica oleracea HOM05D003862 ORTHO05D004398 4.5e-27 124.4 88 67.0
FvH4_6g13690 Fragaria vesca HOM05D003862 ORTHO05D004398 4.5e-27 124.4 87 70.1
TWI31G1113 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 4.5e-27 124.4 88 69.3
TPR.G14480 Trifolium pratense HOM05D003862 ORTHO05D004398 5.8e-27 124.0 88 69.3
Actinidia05313 Actinidia chinensis HOM05D003862 ORTHO05D004398 7.6e-27 123.6 80 72.5
Manes.02G133100 Manihot esculenta HOM05D003862 ORTHO05D004398 1.0e-26 123.2 84 67.9
SMO367G0781 Selaginella moellendorffii HOM05D003862 ORTHO05D004398 1.0e-26 123.2 83 69.9
Rhsim05G0192800 Rhododendron simsii HOM05D003862 ORTHO05D004398 1.3e-26 122.9 110 57.3
BcaB07g31364 Brassica carinata HOM05D003862 ORTHO05D004398 2.9e-26 121.7 88 65.9
A03p68180 Brassica napus HOM05D003862 ORTHO05D004398 2.9e-26 121.7 88 65.9
BraA01t02647Z Brassica rapa HOM05D003862 ORTHO05D004398 2.9e-26 121.7 88 65.9
Manes.01G173900 Manihot esculenta HOM05D003862 ORTHO05D004398 2.9e-26 121.7 84 66.7
TPR.G17728 Trifolium pratense HOM05D003862 ORTHO05D004398 6.5e-26 120.6 88 67.0
Glyma.03G082300 Glycine max HOM05D003862 ORTHO05D004398 1.9e-25 119.0 87 64.4
Hund04959 Selenicereus undatus HOM05D003862 ORTHO05D004398 3.2e-25 118.2 87 63.2
Cfa016018 Carpinus fangiana HOM05D000273 ORTHO05D004398 5.5e-25 117.5 87 67.8
MCO12G250 Micromonas commoda HOM05D003862 ORTHO05D004398 9.3e-25 116.7 84 61.9
Actinidia11257 Actinidia chinensis HOM05D003862 ORTHO05D004398 1.6e-24 115.9 78 74.4
MD03G1093400 Malus domestica HOM05D003862 ORTHO05D004398 2.7e-24 115.2 74 71.6
Phvul.L001624 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 3.5e-24 114.8 87 62.1
Lj3g0015625 Lotus japonicus HOM05D003862 ORTHO05D004398 6.0e-24 114.0 87 62.1
HanXRQChr01g0009491 Helianthus annuus HOM05D003862 ORTHO05D004398 7.9e-24 113.6 82 64.6
CBR_g46834 Chara braunii HOM05D003862 ORTHO05D004398 1.3e-23 112.8 91 57.1
TPR.G5603 Trifolium pratense HOM05D003862 ORTHO05D004398 1.8e-23 112.5 86 60.5
arahy.Tifrunner.gnm1.ann1.817FQF Arachis hypogaea HOM05D003862 ORTHO05D004398 2.3e-23 112.1 80 66.2
arahy.Tifrunner.gnm1.ann1.JG2TRE Arachis hypogaea HOM05D003862 ORTHO05D004398 2.3e-23 112.1 80 66.2
ATR0559G041 Amborella trichopoda HOM05D003862 ORTHO05D004398 3.0e-23 111.7 74 67.6
VMungo1127G0240 Vigna mungo HOM05D003862 ORTHO05D004398 3.9e-23 111.3 75 66.7
vmacro08654 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 6.7e-23 110.5 143 44.1
arahy.Tifrunner.gnm1.ann1.GD7L84 Arachis hypogaea HOM05D003862 ORTHO05D004398 8.7e-23 110.2 80 65.0
Aqoxy4G02928 Aquilegia oxysepala HOM05D003862 ORTHO05D004398 1.5e-22 109.4 87 57.5
arahy.Tifrunner.gnm1.ann1.L1N949 Arachis hypogaea HOM05D003862 ORTHO05D004398 1.9e-22 109.0 80 63.8
QL07p048307 Quercus lobata HOM05D003862 ORTHO05D004398 4.3e-22 107.8 152 42.1
Nn2g14532 Nelumbo nucifera HOM05D003862 ORTHO05D004398 7.4e-22 107.1 78 69.2
Dinv37171 Davidia involucrata HOM05D003862 ORTHO05D004398 3.7e-21 104.8 62 79.0
Eucgr.A01265 Eucalyptus grandis HOM05D003862 ORTHO05D004398 3.7e-21 104.8 81 61.7
PGR004G0102 Punica granatum HOM05D003862 ORTHO05D004398 6.3e-21 104.0 85 57.6
Psat7g239120 Pisum sativum HOM05D003862 ORTHO05D004398 1.8e-20 102.4 86 53.5
FAN27G3302 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.1e-20 101.7 87 59.8
Sc20g0004910 Simmondsia chinensis HOM05D003862 ORTHO05D004398 5.3e-20 100.9 63 74.6
unitig_6.g29269 Utricularia gibba HOM05D003862 ORTHO05D004398 5.3e-20 100.9 83 59.0
unitig_747.g21430 Utricularia gibba HOM05D003862 ORTHO05D004398 5.3e-20 100.9 83 59.0
Haze_24096 Corylus avellana HOM05D003862 ORTHO05D004398 9.0e-20 100.1 78 61.5
CAN.G326.7 Capsicum annuum HOM05D003862 ORTHO05D004398 5.9e-19 97.4 63 69.8
QL01p031927 Quercus lobata HOM05D003862 ORTHO05D004398 1.3e-18 96.3 62 71.0
MBI14_g20103_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 2.2e-18 95.5 87 59.8
SalBow2G1777 Salvia bowleyana HOM05D003862 ORTHO05D004398 2.2e-18 95.5 80 56.2
FAN14G4115 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.5e-17 92.0 94 54.3
Solyc08g048070.1 Solanum lycopersicum HOM05D003862 ORTHO05D004398 1.2e-16 89.7 67 61.2
Peaxi162Scf00165g00129 Petunia axillaris HOM05D003862 ORTHO05D004398 3.6e-16 88.2 80 55.0
Cre01.g033400 Chlamydomonas reinhardtii HOM05D003862 ORTHO05D004398 9.7e-14 80.1 73 50.7
PRCOL_00005138 Prasinoderma coloniale HOM05D003862 ORTHO05D004398 1.3e-13 79.7 69 50.7
Medtr4g021715 Medicago truncatula HOM05D003862 ORTHO05D004398 3.4e-11 71.6 86 45.3
Os05g0111100 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 6.5e-10 67.4 70 44.3


User provided reference genes

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