Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 1.4e-176 622.9 316 100.0
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 8.1e-76 288.1 327 47.7
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 9.0e-75 284.6 362 45.3
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 7.9e-63 245.0 336 41.4
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.3e-60 237.7 350 39.1
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 8.2e-60 235.0 324 42.0
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 4.1e-59 232.6 331 39.6
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 6.9e-59 231.9 348 39.1
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.2e-58 231.1 333 40.2
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 1.2e-58 231.1 330 39.4
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.5e-58 230.7 342 41.2
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 2.6e-58 229.9 327 39.4
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.7e-57 227.3 336 38.1
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 1.7e-57 227.3 351 38.2
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.7e-57 227.3 348 38.8
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.5e-57 225.3 338 39.1
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 8.4e-57 224.9 341 39.3
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 1.1e-56 224.6 339 38.3
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 1.4e-56 224.2 325 39.1
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 1.4e-56 224.2 322 38.8
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.9e-56 223.8 338 38.8
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.9e-56 223.8 338 38.8
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.5e-56 223.4 326 38.7
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 2.5e-56 223.4 341 40.8
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 3.2e-56 223.0 341 38.1
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 5.5e-56 222.2 336 40.5
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 7.1e-56 221.9 338 38.8
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.2e-55 221.1 342 37.1
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 2.1e-55 220.3 337 38.3
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 2.7e-55 219.9 337 39.2
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 2.7e-55 219.9 341 39.0
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 4.6e-55 219.2 339 38.6
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 4.6e-55 219.2 330 38.5
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 6.1e-55 218.8 328 38.7
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 7.9e-55 218.4 329 38.6
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 7.9e-55 218.4 344 37.8
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 7.9e-55 218.4 347 36.9
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 7.9e-55 218.4 329 39.5
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 7.9e-55 218.4 331 37.5
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.0e-54 218.0 337 39.5
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 1.3e-54 217.6 347 36.6
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 2.3e-54 216.9 332 37.7
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.3e-54 216.9 335 37.3
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 3.9e-54 216.1 343 37.0
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 5.1e-54 215.7 344 37.2
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 6.7e-54 215.3 344 36.6
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 6.7e-54 215.3 337 38.0
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 8.7e-54 214.9 343 36.7
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 8.7e-54 214.9 340 38.8
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 8.7e-54 214.9 337 38.0
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 8.7e-54 214.9 345 37.7
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 1.5e-53 214.2 325 38.8
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 1.5e-53 214.2 337 35.3
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.5e-53 214.2 334 37.1
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 2.5e-53 213.4 344 38.1
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 2.5e-53 213.4 339 35.4
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 3.3e-53 213.0 337 37.7
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 3.3e-53 213.0 337 37.7
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 3.3e-53 213.0 337 38.6
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 3.3e-53 213.0 333 38.4
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 3.3e-53 213.0 347 37.2
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 4.3e-53 212.6 340 38.5
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 4.3e-53 212.6 336 36.9
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 4.3e-53 212.6 336 37.8
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 4.3e-53 212.6 339 36.6
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 7.4e-53 211.8 337 37.7
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 7.4e-53 211.8 342 37.7
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 9.7e-53 211.5 342 37.4
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.3e-52 211.1 340 36.5
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 1.3e-52 211.1 340 36.5
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 1.6e-52 210.7 343 36.2
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.6e-52 210.7 340 36.2
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 1.6e-52 210.7 328 36.0
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.6e-52 210.7 330 38.8
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.2e-52 210.3 336 36.3
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 2.2e-52 210.3 329 37.1
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 2.8e-52 209.9 336 36.6
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 2.8e-52 209.9 335 38.2
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 2.8e-52 209.9 339 35.7
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 4.8e-52 209.1 324 37.7
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 6.3e-52 208.8 346 37.3
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 8.2e-52 208.4 339 36.9
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 8.2e-52 208.4 331 36.9
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 8.2e-52 208.4 342 37.4
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.1e-51 208.0 329 35.6
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.1e-51 208.0 384 34.6
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 1.4e-51 207.6 336 37.5
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.4e-51 207.6 336 36.0
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 1.8e-51 207.2 339 35.4
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.8e-51 207.2 327 36.7
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.8e-51 207.2 341 36.4
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.8e-51 207.2 335 37.9
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 2.4e-51 206.8 333 37.8
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 3.1e-51 206.5 334 35.6
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 3.1e-51 206.5 339 38.1
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 3.1e-51 206.5 328 35.4
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 5.3e-51 205.7 347 37.5
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.5e-50 204.1 350 36.9
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.6e-50 203.4 330 37.6
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 3.4e-50 203.0 319 39.2
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 4.5e-50 202.6 348 37.4
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 5.9e-50 202.2 350 36.3
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 5.9e-50 202.2 341 35.2
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 5.9e-50 202.2 392 33.4
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.3e-49 201.1 340 36.8
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 2.9e-49 199.9 303 37.0
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.8e-49 199.5 349 35.5
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.5e-48 196.8 321 36.8
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 1.4e-46 191.0 328 36.9
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 5.1e-46 189.1 321 39.3
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 8.8e-46 188.3 315 35.2
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 2.5e-45 186.8 312 35.9
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 9.7e-45 184.9 299 36.1
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 2.2e-44 183.7 304 35.5
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 4.8e-44 182.6 353 33.7
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 4.1e-43 179.5 325 34.2
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 2.0e-42 177.2 344 32.0
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 6.5e-41 172.2 269 37.2
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 2.5e-40 170.2 297 35.7
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 7.9e-39 165.2 291 33.7
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.0e-38 163.3 334 32.9
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 5.1e-38 162.5 303 34.3
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 8.8e-38 161.8 304 34.5
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 2.2e-36 157.1 301 32.9
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 2.8e-36 156.8 221 40.7
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 1.8e-35 154.1 288 33.3
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 4.1e-35 152.9 307 33.2
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 7.7e-34 148.7 312 32.4
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.7e-33 147.5 376 28.2
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 2.9e-33 146.7 270 32.2
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 6.5e-33 145.6 259 35.1
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.9e-32 144.1 163 46.6
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.6e-29 133.7 141 46.8
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 2.2e-28 130.6 204 37.7
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 5.9e-26 122.5 258 30.6
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.1e-24 118.2 119 45.4
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 4.2e-24 116.3 289 29.4
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 7.2e-24 115.5 144 43.8
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 9.4e-24 115.2 288 29.9
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 9.4e-24 115.2 246 32.9
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 5.9e-18 95.9 257 28.8
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.5e-16 91.3 94 45.7
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.2e-15 88.2 161 34.8
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.1e-15 87.4 204 32.4
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.2e-14 82.8 151 36.4
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 6.8e-14 82.4 200 31.0
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.4e-11 73.9 94 40.4
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.7e-07 59.7 125 29.6


User provided reference genes

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