Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 9.5e-223 776.5 400 100.0
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.0e-168 597.0 392 76.5
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.4e-165 585.9 392 75.3
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 2.0e-124 449.9 393 60.1
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 4.7e-97 359.0 385 50.9
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 2.3e-83 313.5 381 43.8
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 4.3e-66 256.1 380 37.1
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 6.5e-62 242.3 326 42.3
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.0e-59 233.4 378 37.3
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 2.5e-58 230.3 380 36.1
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 2.0e-55 220.7 382 36.6
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.0e-55 220.7 371 36.9
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.7e-54 217.6 380 35.3
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.7e-54 217.6 382 35.9
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 5.0e-54 216.1 371 34.0
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.4e-53 214.5 380 35.5
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.4e-53 214.5 315 38.7
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 2.5e-53 213.8 374 35.8
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 7.2e-53 212.2 371 35.6
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 7.2e-53 212.2 375 36.0
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 9.4e-53 211.8 377 35.0
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 9.4e-53 211.8 376 33.5
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 1.6e-52 211.1 373 34.6
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.1e-52 210.7 375 34.4
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.7e-52 210.3 316 38.3
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 4.6e-52 209.5 372 33.3
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 4.6e-52 209.5 383 33.9
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 6.1e-52 209.1 385 33.5
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.0e-51 208.4 375 34.7
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.0e-51 208.4 375 35.7
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 1.4e-51 208.0 374 34.0
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 1.4e-51 208.0 379 35.1
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 1.4e-51 208.0 371 33.4
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 1.8e-51 207.6 377 36.3
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 2.3e-51 207.2 381 34.6
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 3.0e-51 206.8 381 33.9
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 3.9e-51 206.5 381 35.2
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 3.9e-51 206.5 381 35.2
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 3.9e-51 206.5 379 32.7
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.1e-51 206.1 375 35.5
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 5.1e-51 206.1 375 33.9
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 6.7e-51 205.7 383 34.5
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 6.7e-51 205.7 373 33.8
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 8.8e-51 205.3 375 35.2
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-50 204.9 371 34.0
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.1e-50 204.9 375 35.2
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 1.5e-50 204.5 381 35.7
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.0e-50 204.1 371 33.7
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 2.0e-50 204.1 374 34.8
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 2.6e-50 203.8 373 33.2
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 3.3e-50 203.4 372 35.2
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.7e-49 201.1 373 34.0
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 2.2e-49 200.7 327 36.7
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 3.7e-49 199.9 382 34.3
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 4.8e-49 199.5 376 34.0
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 4.8e-49 199.5 378 34.1
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 6.3e-49 199.1 374 34.8
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 8.2e-49 198.7 373 33.5
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 8.2e-49 198.7 376 34.3
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.1e-48 198.4 380 34.5
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 1.1e-48 198.4 383 34.7
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 1.4e-48 198.0 374 34.2
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 1.8e-48 197.6 374 33.4
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 3.1e-48 196.8 382 33.5
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 4.1e-48 196.4 374 34.2
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.2e-47 194.9 377 33.4
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 1.2e-47 194.9 377 33.7
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 2.0e-47 194.1 407 32.7
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 2.6e-47 193.7 412 31.8
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.6e-47 193.7 374 33.4
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.9e-47 192.6 318 36.2
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.3e-46 191.4 373 32.4
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.7e-46 191.0 379 32.5
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.7e-46 191.0 375 32.8
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.2e-46 190.7 377 33.4
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.2e-46 190.7 375 32.8
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.2e-46 190.7 373 33.0
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.9e-46 190.3 378 33.1
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 3.8e-46 189.9 380 32.1
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 3.8e-46 189.9 375 32.8
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 6.5e-46 189.1 381 33.6
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 8.5e-46 188.7 377 32.1
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.9e-45 187.6 376 31.6
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 1.9e-45 187.6 374 31.8
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.5e-45 187.2 371 33.2
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.5e-45 186.0 381 31.0
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 5.5e-45 186.0 381 31.2
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 7.2e-45 185.7 371 31.5
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 7.2e-45 185.7 381 31.0
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.2e-44 184.9 315 35.9
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 2.1e-44 184.1 374 31.6
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 2.7e-44 183.7 380 31.3
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.7e-44 183.7 379 31.4
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 3.6e-44 183.3 371 32.6
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 3.6e-44 183.3 324 34.6
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 4.7e-44 183.0 373 33.0
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 7.9e-44 182.2 380 31.1
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 1.8e-43 181.0 371 31.5
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 2.3e-43 180.6 380 31.3
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 3.0e-43 180.3 370 31.4
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.2e-43 179.5 389 31.9
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 8.8e-43 178.7 298 35.9
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.1e-42 178.3 373 31.1
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 1.5e-42 177.9 418 27.8
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.0e-42 177.6 379 31.1
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.6e-42 177.2 378 30.2
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 4.4e-42 176.4 379 31.1
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 5.7e-42 176.0 380 30.3
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 5.7e-42 176.0 377 30.5
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 5.7e-42 176.0 322 34.8
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.4e-42 175.6 323 35.3
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 9.7e-42 175.3 387 30.0
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 9.7e-42 175.3 390 33.3
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 1.7e-41 174.5 380 30.0
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.7e-41 174.5 337 33.5
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 2.2e-41 174.1 377 30.8
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 2.2e-41 174.1 359 33.4
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 3.7e-41 173.3 381 30.2
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 6.3e-41 172.6 379 30.9
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 6.3e-41 172.6 386 30.1
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 1.1e-40 171.8 374 31.0
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 1.8e-40 171.0 370 31.1
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 7.0e-40 169.1 410 28.5
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 7.0e-40 169.1 298 36.2
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.2e-39 168.3 392 29.1
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.6e-39 167.9 387 30.0
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 2.6e-39 167.2 406 28.8
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 5.9e-39 166.0 378 30.2
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 7.7e-39 165.6 324 33.0
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 2.2e-38 164.1 301 35.2
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 5.0e-38 162.9 381 30.4
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.1e-37 161.8 376 29.3
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 5.5e-37 159.5 326 31.3
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 5.5e-37 159.5 369 29.3
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 7.2e-37 159.1 363 29.8
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 4.4e-34 149.8 246 37.8
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 7.5e-34 149.1 373 28.2
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 2.0e-31 141.0 491 25.3
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 6.5e-30 136.0 312 34.0
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 1.5e-29 134.8 484 25.2
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 9.4e-29 132.1 514 23.5
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.0e-27 127.1 225 35.1
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 3.4e-26 123.6 210 36.2
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 1.3e-25 121.7 209 32.1
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 8.3e-25 119.0 163 39.3
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.4e-24 117.5 216 32.9
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.0e-24 115.9 163 38.7
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.0e-23 114.4 163 38.0
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 2.0e-23 114.4 258 27.9
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 3.5e-23 113.6 321 26.5
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.5e-23 113.2 165 37.6
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.5e-23 113.2 212 31.6
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.5e-23 113.2 196 37.2
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 7.7e-23 112.5 155 41.3
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-22 111.7 196 36.7
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.8e-22 110.2 163 38.0
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 5.0e-22 109.8 166 36.7
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.9e-21 107.8 158 35.4
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 4.2e-21 106.7 195 34.9
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.6e-20 104.8 163 34.4
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 3.6e-20 103.6 184 33.2
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.6e-18 97.4 104 45.2
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 3.4e-18 97.1 306 26.1
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.7e-17 94.7 163 34.4
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 1.4e-16 91.7 210 31.4
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.0e-14 85.5 171 36.3
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.7e-14 84.7 171 31.0
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 4.3e-13 80.1 181 29.8
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.6e-12 78.2 183 31.7
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 2.8e-12 77.4 272 25.4
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.0e-11 75.5 118 36.4
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 1.0e-11 75.5 124 36.3
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-11 75.1 150 30.0
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.4e-11 75.1 134 29.1
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 3.7e-09 67.0 133 29.3
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 3.2e-08 63.9 133 32.3
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 4.1e-08 63.5 130 30.0


User provided reference genes

Program Settings