Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 2.4e-297 1024.6 478 100.0
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 9.5e-169 597.4 431 63.6
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 8.6e-162 574.3 453 58.7
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 4.7e-160 568.5 417 61.6
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 3.2e-156 555.8 449 56.6
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 9.2e-156 554.3 439 57.6
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.2e-155 553.9 439 57.6
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 1.2e-155 553.9 446 57.8
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 4.6e-155 552.0 444 57.0
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 1.7e-154 550.1 449 57.0
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 3.0e-154 549.3 449 55.2
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 1.5e-153 547.0 447 55.9
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 1.5e-153 547.0 455 56.3
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 1.9e-153 546.6 456 55.9
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 5.6e-153 545.0 425 57.9
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 5.6e-153 545.0 426 57.7
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 7.3e-153 544.7 425 57.9
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.6e-152 543.5 483 53.2
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 2.8e-152 542.7 444 55.4
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 2.8e-152 542.7 444 55.4
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 1.1e-151 540.8 442 55.9
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 1.8e-151 540.0 469 55.9
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 2.3e-151 539.7 446 55.2
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 2.3e-151 539.7 429 57.6
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 4.0e-151 538.9 449 55.5
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 5.2e-151 538.5 447 55.3
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 8.9e-151 537.7 461 54.7
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 1.5e-150 537.0 465 55.3
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 2.0e-150 536.6 450 58.0
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 2.6e-150 536.2 455 54.5
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 5.8e-150 535.0 452 58.2
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 5.8e-150 535.0 426 57.3
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 5.8e-150 535.0 452 55.5
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 7.5e-150 534.6 428 56.5
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 9.8e-150 534.3 431 58.2
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.3e-149 533.9 462 55.8
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 1.3e-149 533.9 434 56.9
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 1.3e-149 533.9 481 52.0
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 1.7e-149 533.5 453 53.2
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 1.7e-149 533.5 425 56.0
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 2.2e-149 533.1 454 54.8
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.7e-149 532.3 450 55.1
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 3.7e-149 532.3 453 55.0
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 6.4e-149 531.6 426 57.3
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.4e-149 531.6 449 55.9
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 1.4e-148 530.4 458 53.5
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.9e-148 530.0 455 54.7
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 1.9e-148 530.0 451 55.0
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 2.4e-148 529.6 472 55.1
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.4e-148 529.6 423 57.4
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 2.4e-148 529.6 426 56.8
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.2e-148 529.3 425 56.7
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 3.2e-148 529.3 469 52.7
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 4.1e-148 528.9 425 56.5
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 4.1e-148 528.9 425 56.5
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 5.4e-148 528.5 431 54.3
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 7.1e-148 528.1 473 55.0
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 7.1e-148 528.1 473 55.0
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 9.2e-148 527.7 447 56.8
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 9.2e-148 527.7 433 55.0
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.6e-147 526.9 425 56.2
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.6e-147 526.9 425 56.5
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.6e-147 526.9 433 54.7
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 2.7e-147 526.2 428 56.8
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 3.5e-147 525.8 431 55.7
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 3.5e-147 525.8 426 55.6
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 3.5e-147 525.8 433 54.5
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 6.0e-147 525.0 444 53.6
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 1.0e-146 524.2 425 57.4
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 1.7e-146 523.5 446 53.8
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 2.3e-146 523.1 453 53.4
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.1e-146 521.9 486 51.2
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 8.6e-146 521.2 426 56.1
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 8.6e-146 521.2 426 56.1
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 8.6e-146 521.2 397 59.4
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 1.5e-145 520.4 455 55.4
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 1.5e-145 520.4 427 55.5
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 2.5e-145 519.6 456 55.7
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 3.3e-145 519.2 426 56.3
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 3.3e-145 519.2 449 53.2
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 4.3e-145 518.8 428 56.1
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 7.3e-145 518.1 433 54.7
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 1.6e-144 516.9 458 53.3
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 2.1e-144 516.5 428 56.1
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 8.1e-144 514.6 429 53.6
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.8e-143 513.5 478 50.4
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 3.1e-143 512.7 444 53.4
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.6e-142 509.6 456 53.7
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 5.8e-142 508.4 457 51.2
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 9.9e-142 507.7 425 54.8
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.3e-141 507.3 432 55.1
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 2.9e-141 506.1 425 55.1
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.9e-140 503.4 469 51.4
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 1.6e-139 500.4 456 50.9
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 9.6e-137 491.1 484 50.6
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 6.2e-136 488.4 382 58.1
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.3e-133 480.7 479 49.9
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 1.7e-133 480.3 529 45.7
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 4.9e-133 478.8 364 60.7
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 9.3e-132 474.6 428 52.6
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 8.7e-130 468.0 424 54.0
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 2.8e-128 463.0 380 55.3
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 3.1e-127 459.5 431 52.0
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.2e-126 457.6 469 46.9
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 3.4e-126 456.1 466 47.2
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 7.1e-124 448.4 423 48.9
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.1e-123 446.8 341 58.1
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 2.1e-123 446.8 453 49.2
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 4.6e-123 445.7 383 54.6
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 4.6e-123 445.7 383 54.6
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 1.7e-122 443.7 347 58.5
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.4e-119 434.1 327 57.2
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 6.0e-115 418.7 383 53.0
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 1.5e-110 404.1 322 55.3
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 8.7e-106 388.3 428 47.2
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 2.8e-104 383.3 411 46.2
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 2.0e-102 377.1 426 45.8
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 2.1e-99 367.1 521 38.6
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 7.4e-97 358.6 457 41.4
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.3e-96 357.8 272 57.0
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.7e-81 305.8 240 57.5
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 4.2e-76 289.7 426 39.9
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 3.1e-71 273.5 220 55.5
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.6e-52 209.5 186 52.2
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.6e-51 208.0 111 75.7
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 7.8e-46 189.1 162 52.5
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.5e-38 163.7 311 33.4
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.3e-37 161.8 150 48.7
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.3e-36 157.1 150 48.7
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 3.5e-30 137.1 130 53.8
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.5e-28 131.7 124 52.4
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.2e-24 117.9 120 49.2
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 4.6e-22 110.2 126 46.8
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 7.3e-20 102.8 187 36.4
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 6.9e-18 96.3 111 43.2
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.6e-17 94.4 78 55.1
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 8.4e-16 89.4 172 32.0


User provided reference genes

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