Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 7.9e-146 520.4 258 100.0
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.7e-103 379.8 259 77.2
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.9e-55 219.5 240 53.8
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 3.7e-50 202.6 168 64.3
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 7.4e-43 178.3 148 66.2
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 1.3e-39 167.5 134 63.4
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 5.5e-38 162.2 181 56.9
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 5.1e-36 155.6 151 57.0
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.1e-35 154.5 151 58.9
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 9.7e-35 151.4 180 51.1
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.3e-34 151.0 130 64.6
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 1.3e-34 151.0 130 60.8
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.7e-34 150.6 153 55.6
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.7e-34 150.6 153 55.6
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 2.2e-34 150.2 130 62.3
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 2.2e-34 150.2 160 55.0
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 3.7e-34 149.4 178 50.6
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 4.8e-34 149.1 130 61.5
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 4.8e-34 149.1 130 61.5
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 6.3e-34 148.7 132 61.4
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 6.3e-34 148.7 130 63.1
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 8.2e-34 148.3 130 62.3
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 1.1e-33 147.9 132 62.1
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 1.1e-33 147.9 132 61.4
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.1e-33 147.9 130 60.0
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.1e-33 147.9 130 61.5
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 1.4e-33 147.5 130 61.5
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 1.4e-33 147.5 168 53.6
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 1.4e-33 147.5 153 56.2
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 1.8e-33 147.1 132 62.1
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 1.8e-33 147.1 153 56.2
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 1.8e-33 147.1 207 47.8
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 1.8e-33 147.1 132 60.6
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 2.4e-33 146.7 130 60.8
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.4e-33 146.7 130 62.3
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 2.4e-33 146.7 130 60.8
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 2.4e-33 146.7 212 44.3
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 3.1e-33 146.4 130 62.3
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.1e-33 146.4 151 57.6
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 4.1e-33 146.0 131 61.8
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 4.1e-33 146.0 219 43.8
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 4.1e-33 146.0 178 51.7
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 4.1e-33 146.0 153 56.2
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 4.1e-33 146.0 142 57.7
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 5.3e-33 145.6 132 61.4
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 5.3e-33 145.6 132 61.4
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 5.3e-33 145.6 132 61.4
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 5.3e-33 145.6 130 61.5
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 5.3e-33 145.6 164 52.4
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 5.3e-33 145.6 130 61.5
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 5.3e-33 145.6 132 60.6
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 5.3e-33 145.6 151 57.6
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 5.3e-33 145.6 166 50.6
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.9e-33 145.2 151 57.0
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 6.9e-33 145.2 130 61.5
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 6.9e-33 145.2 130 61.5
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.9e-33 145.2 221 44.8
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 6.9e-33 145.2 132 61.4
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 6.9e-33 145.2 129 58.9
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 9.1e-33 144.8 132 60.6
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 9.1e-33 144.8 153 56.2
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 1.2e-32 144.4 129 60.5
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 1.2e-32 144.4 210 46.2
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.5e-32 144.1 130 60.8
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.5e-32 144.1 130 60.8
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.5e-32 144.1 166 53.0
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 1.5e-32 144.1 130 61.5
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 1.5e-32 144.1 211 45.0
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 2.0e-32 143.7 130 59.2
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 2.0e-32 143.7 188 48.9
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 2.0e-32 143.7 130 60.8
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 2.0e-32 143.7 130 59.2
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 2.0e-32 143.7 130 60.8
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 2.6e-32 143.3 130 60.0
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.6e-32 143.3 131 58.0
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.6e-32 143.3 131 58.0
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.6e-32 143.3 130 59.2
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 3.4e-32 142.9 129 60.5
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 4.5e-32 142.5 154 55.2
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.5e-32 142.5 120 65.8
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 4.5e-32 142.5 154 54.5
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 4.5e-32 142.5 202 48.0
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 4.5e-32 142.5 130 57.7
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 5.9e-32 142.1 129 59.7
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 5.9e-32 142.1 131 61.1
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 5.9e-32 142.1 131 60.3
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 5.9e-32 142.1 130 58.5
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 7.7e-32 141.7 130 60.8
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 7.7e-32 141.7 130 60.8
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 7.7e-32 141.7 178 50.6
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 7.7e-32 141.7 130 56.9
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 7.7e-32 141.7 153 56.9
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 1.0e-31 141.4 130 56.9
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 1.0e-31 141.4 129 59.7
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.0e-31 141.4 130 60.8
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 1.3e-31 141.0 131 60.3
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 1.3e-31 141.0 131 60.3
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.3e-31 141.0 131 60.3
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 1.3e-31 141.0 123 63.4
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 1.3e-31 141.0 132 59.1
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 1.7e-31 140.6 134 59.0
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 1.7e-31 140.6 130 58.5
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 1.7e-31 140.6 153 52.3
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.7e-31 140.6 154 51.3
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 1.7e-31 140.6 130 58.5
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 1.7e-31 140.6 130 58.5
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.7e-31 140.6 146 52.7
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 1.7e-31 140.6 130 59.2
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 2.2e-31 140.2 130 56.9
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 2.9e-31 139.8 173 49.1
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 2.9e-31 139.8 173 49.1
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 3.8e-31 139.4 155 52.3
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 5.0e-31 139.0 130 56.9
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 5.0e-31 139.0 130 58.5
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 5.0e-31 139.0 129 58.1
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 6.5e-31 138.7 130 55.4
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.5e-31 138.7 120 65.0
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 6.5e-31 138.7 153 54.9
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 6.5e-31 138.7 130 57.7
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 8.5e-31 138.3 130 56.9
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 8.5e-31 138.3 130 56.9
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.1e-30 137.9 142 55.6
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 1.1e-30 137.9 130 57.7
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.1e-30 137.9 110 60.9
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.4e-30 137.5 130 56.9
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 1.4e-30 137.5 130 56.9
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.9e-30 137.1 137 56.2
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 3.2e-30 136.3 151 49.7
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 4.2e-30 136.0 153 51.6
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 4.2e-30 136.0 113 63.7
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 4.2e-30 136.0 114 63.2
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 4.2e-30 136.0 151 54.3
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 5.5e-30 135.6 130 55.4
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 7.2e-30 135.2 168 47.0
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 9.4e-30 134.8 168 47.0
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 9.4e-30 134.8 139 56.8
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.6e-29 134.0 121 59.5
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 2.1e-29 133.7 129 55.8
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 2.3e-28 130.2 130 53.8
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 8.8e-28 128.3 131 53.4
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 2.6e-27 126.7 123 54.5
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 3.2e-22 109.8 85 67.1
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 3.6e-21 106.3 97 57.7
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 5.2e-20 102.4 68 76.5
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 4.1e-17 92.8 166 38.0
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 4.1e-17 92.8 129 45.0
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 4.1e-17 92.8 129 45.0
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 9.1e-17 91.7 164 37.8
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 1.7e-15 87.4 98 41.8
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.6e-13 80.9 60 58.3
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 2.1e-13 80.5 141 36.2
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 2.7e-13 80.1 103 39.8
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 4.7e-13 79.3 76 51.3
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 5.2e-12 75.9 62 66.1
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 1.3e-10 71.2 55 67.3
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 1.3e-10 71.2 55 67.3


User provided reference genes

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