Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 0.0e+00 1196.0 640 100.0
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 2.7e-147 526.6 651 51.9
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 9.7e-60 235.7 607 31.5
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 7.4e-52 209.5 578 31.7
Pp3c24_19020 Physcomitrium patens HOM05D026724 ORTHO05D026055 9.7e-52 209.1 491 35.6
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 7.0e-26 123.2 661 24.1
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.9e-24 117.9 695 22.3
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.5e-23 115.5 182 32.4
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 8.9e-21 106.3 167 31.7
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 3.7e-19 100.9 201 30.3
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 3.7e-19 100.9 201 30.3
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.7e-17 94.7 173 38.2
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 4.6e-17 94.0 173 36.4
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 7.8e-17 93.2 203 34.5
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 7.8e-17 93.2 203 34.5
Pp3c8_1070 Physcomitrium patens HOM05D000085 ORTHO05D001756 7.8e-17 93.2 192 28.6
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 1.3e-16 92.4 172 36.0
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 1.3e-16 92.4 203 34.5
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 1.3e-16 92.4 203 34.5
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 1.7e-16 92.0 176 34.7
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 2.3e-16 91.7 203 34.0
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 2.3e-16 91.7 172 36.6
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 2.3e-16 91.7 172 36.6
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 3.0e-16 91.3 168 36.9
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 5.0e-16 90.5 203 34.0
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 5.0e-16 90.5 172 35.5
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 6.6e-16 90.1 167 38.9
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 8.6e-16 89.7 167 37.7
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 1.1e-15 89.4 203 34.0
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 1.1e-15 89.4 168 37.5
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 1.5e-15 89.0 175 35.4
Pp3c26_7470 Physcomitrium patens HOM05D026724 ORTHO05D020966 1.5e-15 89.0 205 30.2
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 1.9e-15 88.6 167 37.1
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 1.9e-15 88.6 173 35.3
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 1.9e-15 88.6 175 36.6
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 2.5e-15 88.2 167 37.1
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 2.5e-15 88.2 167 37.1
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 3.3e-15 87.8 165 38.8
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 3.3e-15 87.8 172 36.0
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 4.3e-15 87.4 207 33.8
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 4.3e-15 87.4 171 36.8
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 4.3e-15 87.4 173 37.0
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 4.3e-15 87.4 167 37.7
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 5.6e-15 87.0 175 34.9
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 5.6e-15 87.0 167 36.5
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 5.6e-15 87.0 167 37.1
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 9.5e-15 86.3 170 35.9
Manes.04G153800 Manihot esculenta HOM05D000085 ORTHO05D006184 9.5e-15 86.3 147 29.3
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 9.5e-15 86.3 172 35.5
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 9.5e-15 86.3 167 36.5
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 1.2e-14 85.9 232 31.5
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 1.2e-14 85.9 163 35.0
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 1.2e-14 85.9 162 33.3
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 1.2e-14 85.9 172 35.5
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 1.6e-14 85.5 167 35.3
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 1.6e-14 85.5 167 37.1
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 1.6e-14 85.5 172 35.5
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 2.1e-14 85.1 172 35.5
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 2.1e-14 85.1 171 36.3
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 2.1e-14 85.1 170 36.5
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 2.1e-14 85.1 172 35.5
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 2.8e-14 84.7 170 36.5
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 2.8e-14 84.7 172 35.5
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 2.8e-14 84.7 170 36.5
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 2.8e-14 84.7 170 37.1
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 2.8e-14 84.7 170 36.5
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.8e-14 84.7 188 28.2
AagrBONN_evm.TU.Sc2ySwM_228.2886 Anthoceros agrestis HOM05D000085 ORTHO05D001756 3.6e-14 84.3 158 32.9
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 3.6e-14 84.3 168 36.3
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 3.6e-14 84.3 171 36.8
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 3.6e-14 84.3 170 36.5
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 3.6e-14 84.3 172 35.5
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 3.6e-14 84.3 176 34.1
Pp3c22_14520 Physcomitrium patens HOM05D016224 ORTHO05D023076 3.6e-14 84.3 164 30.5
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 3.6e-14 84.3 168 35.1
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 4.7e-14 84.0 173 35.8
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 4.7e-14 84.0 167 37.1
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 4.7e-14 84.0 172 34.9
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 6.2e-14 83.6 167 36.5
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 6.2e-14 83.6 172 33.1
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 6.2e-14 83.6 172 35.5
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 6.2e-14 83.6 168 36.9
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 6.2e-14 83.6 170 34.1
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 6.2e-14 83.6 167 36.5
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 8.0e-14 83.2 166 34.3
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 8.0e-14 83.2 172 34.3
Pp3c3_13770 Physcomitrium patens HOM05D026724 ORTHO05D020966 8.0e-14 83.2 197 28.9
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 8.0e-14 83.2 175 34.9
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 8.0e-14 83.2 167 35.9
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 1.4e-13 82.4 162 38.3
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 1.4e-13 82.4 204 32.8
Thecc.10G132100 Theobroma cacao HOM05D000085 ORTHO05D006184 1.8e-13 82.0 152 30.3
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 2.3e-13 81.6 172 34.3
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 3.1e-13 81.3 167 34.7
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 3.1e-13 81.3 191 35.1
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 3.1e-13 81.3 172 34.9
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 3.1e-13 81.3 167 35.9
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 4.0e-13 80.9 167 34.7
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 4.0e-13 80.9 167 35.3
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 4.0e-13 80.9 167 35.3
Pp3c17_19290 Physcomitrium patens HOM05D000085 ORTHO05D001756 5.2e-13 80.5 144 27.8
Potri.003G189850 Populus trichocarpa HOM05D000085 ORTHO05D006184 6.8e-13 80.1 152 30.9
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 8.9e-13 79.7 167 32.9
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.2e-12 79.3 145 36.6
Pp3c13_19300 Physcomitrium patens HOM05D026724 ORTHO05D020966 1.2e-12 79.3 207 27.1
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 1.5e-12 79.0 203 32.5
Sed0010025 Sechium edule HOM05D000085 ORTHO05D009791 1.5e-12 79.0 191 29.8
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 2.0e-12 78.6 172 33.1
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 2.0e-12 78.6 145 36.6
PSO675G2913 Papaver somniferum HOM05D000085 ORTHO05D006184 2.6e-12 78.2 152 28.9
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 3.4e-12 77.8 167 34.7
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 5.8e-12 77.0 145 37.2
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 9.8e-12 76.3 146 35.6
ClCG08G006270 Citrullus lanatus HOM05D000085 ORTHO05D009791 1.7e-11 75.5 187 30.5
Sed0020592 Sechium edule HOM05D000085 ORTHO05D006184 1.7e-11 75.5 127 29.1
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 2.9e-11 74.7 123 40.7
Pp3c19_13560 Physcomitrium patens HOM05D016224 ORTHO05D023076 2.9e-11 74.7 230 26.1
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 3.7e-11 74.3 126 38.9
MELO3C008431.2 Cucumis melo HOM05D000085 ORTHO05D009791 6.4e-11 73.6 189 28.6
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 8.3e-11 73.2 169 33.7
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 8.3e-11 73.2 169 33.7
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.9e-10 72.0 178 34.3
PGR044G1330 Punica granatum HOM05D000085 ORTHO05D006184 1.9e-10 72.0 173 27.7
Potri.005G185500 Populus trichocarpa HOM05D000085 ORTHO05D009791 2.4e-10 71.6 117 36.8
Aqoxy6G00345 Aquilegia oxysepala HOM05D000085 ORTHO05D009791 5.4e-10 70.5 171 28.1
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 7.0e-10 70.1 118 39.0
Lj9A652T57 Lonicera japonica HOM05D000085 ORTHO05D006184 7.0e-10 70.1 190 26.8
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 1.2e-09 69.3 207 30.4
PSO541G3755 Papaver somniferum HOM05D000085 ORTHO05D006184 1.2e-09 69.3 196 26.5
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.6e-09 68.9 173 34.1
FAN03G0175 Fragaria x ananassa HOM05D000085 ORTHO05D006184 1.6e-09 68.9 125 26.4
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 1.6e-09 68.9 118 35.6
DCAR_029721 Daucus carota HOM05D000085 ORTHO05D006184 2.7e-09 68.2 208 27.4
FAN01G1090 Fragaria x ananassa HOM05D000085 ORTHO05D006184 3.5e-09 67.8 125 25.6
Potri.001G224800 Populus trichocarpa HOM05D000085 ORTHO05D006184 4.6e-09 67.4 145 28.3
TWI79G0144 Tripterygium wilfordii HOM05D000085 ORTHO05D006184 4.6e-09 67.4 167 25.7
CSS0024542 Camellia sinensis var. sinensis HOM05D000085 ORTHO05D009791 1.0e-08 66.2 164 30.5
Glyma.04G126000 Glycine max HOM05D000085 ORTHO05D006184 1.0e-08 66.2 196 22.4
AagrBONN_evm.TU.Sc2ySwM_117.1414 Anthoceros agrestis HOM05D016224 ORTHO05D010508 2.3e-08 65.1 202 26.2
TPR.G30402 Trifolium pratense HOM05D000085 ORTHO05D006184 2.3e-08 65.1 166 24.1
TAR628G0721 Trochodendron aralioides HOM05D000085 ORTHO05D009791 3.0e-08 64.7 146 28.8
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 3.9e-08 64.3 168 32.1
Medtr3g011730 Medicago truncatula HOM05D000085 ORTHO05D006184 5.0e-08 63.9 211 27.0
TWI60G0672 Tripterygium wilfordii HOM05D000085 ORTHO05D009791 5.0e-08 63.9 170 27.6
Peaxi162Scf00066g01519 Petunia axillaris HOM05D000085 ORTHO05D009791 6.6e-08 63.5 188 26.6
CAN.G46.6 Capsicum annuum HOM05D000085 ORTHO05D009791 8.6e-08 63.2 186 26.9
Solyc04g063370.3 Solanum lycopersicum HOM05D000085 ORTHO05D009791 8.6e-08 63.2 117 30.8
Sopen04g026290 Solanum pennellii HOM05D000085 ORTHO05D009791 8.6e-08 63.2 117 30.8
Sed0014409 Sechium edule HOM05D000085 ORTHO05D006184 1.1e-07 62.8 179 24.0
TPR.G16401 Trifolium pratense HOM05D000085 ORTHO05D006184 3.3e-07 61.2 160 26.2
Aqoxy6G00346 Aquilegia oxysepala HOM05D000485 ORTHO05D009791 5.6e-07 60.5 174 24.7
Glyma.06G312600 Glycine max HOM05D000085 ORTHO05D006184 5.6e-07 60.5 196 21.4
Lj4A685T34 Lonicera japonica HOM05D000085 ORTHO05D009791 5.6e-07 60.5 199 25.1
MELO3C011783.2 Cucumis melo HOM05D000085 ORTHO05D006184 9.5e-07 59.7 174 25.9
Migut.C01091 Erythranthe guttata HOM05D000085 ORTHO05D009791 9.5e-07 59.7 188 26.6
Prupe.8G012500 Prunus persica HOM05D000085 ORTHO05D009791 9.5e-07 59.7 157 29.9
Lj6g0021794 Lotus japonicus HOM05D000085 ORTHO05D015977 1.6e-06 58.9 168 23.8
Prupe.8G012200 Prunus persica HOM05D000085 ORTHO05D009791 1.6e-06 58.9 129 31.0
Prupe.8G012300 Prunus persica HOM05D008363 ORTHO05D009791 1.6e-06 58.9 134 29.9
SalBow6G4001 Salvia bowleyana HOM05D000085 ORTHO05D009791 1.6e-06 58.9 136 29.4
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 2.1e-06 58.5 88 40.9
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 2.1e-06 58.5 109 36.7
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 2.1e-06 58.5 171 31.6
RcHm_v2.0_Chr6g0277981 Rosa chinensis HOM05D000085 ORTHO05D009791 2.8e-06 58.2 117 35.0
DCAR_031504 Daucus carota HOM05D000085 ORTHO05D009791 3.6e-06 57.8 176 28.4
Cfa018397 Carpinus fangiana HOM05D000085 ORTHO05D009791 4.7e-06 57.4 164 26.8
Lj3g0006871 Lotus japonicus HOM05D000085 ORTHO05D006184 4.7e-06 57.4 186 20.4
Migut.N03251 Erythranthe guttata HOM05D000085 ORTHO05D009791 8.1e-06 56.6 158 23.4


User provided reference genes

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