Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_4070 Physcomitrium patens HOM05D025282 ORTHO05D023513 4.2e-226 787.7 407 100.0
Pp3c8_24110 Physcomitrium patens HOM05D025282 ORTHO05D023513 2.2e-126 456.4 414 60.6
Mapoly0118s0032 Marchantia polymorpha HOM05D025282 ORTHO05D023513 2.5e-13 80.9 390 23.6
Mapoly0009s0090 Marchantia polymorpha HOM05D025282 ORTHO05D023513 1.4e-11 75.1 414 24.2
AagrBONN_evm.TU.Sc2ySwM_344.2059 Anthoceros agrestis HOM05D002421 ORTHO05D002560 5.3e-11 73.2 353 24.9
Pp3c23_10870 Physcomitrium patens HOM05D002440 ORTHO05D002576 5.3e-11 73.2 375 26.7
AagrBONN_evm.TU.Sc2ySwM_228.1861 Anthoceros agrestis HOM05D025282 ORTHO05D023513 9.0e-11 72.4 106 35.8
SEGI_01544 Sequoiadendron giganteum HOM05D002421 ORTHO05D002560 5.8e-10 69.7 369 23.0
SEGI_40655 Sequoiadendron giganteum HOM05D002421 ORTHO05D002560 5.8e-10 69.7 369 23.0
Pp3c9_13730 Physcomitrium patens HOM05D002440 ORTHO05D002576 1.0e-09 68.9 151 31.1
HPP92_016119 Vanilla planifolia HOM05D012719 ORTHO05D011609 1.3e-09 68.6 114 28.9
HPP92_011411 Vanilla planifolia HOM05D012719 ORTHO05D011609 2.5e-08 64.3 119 29.4
Mapoly0005s0250 Marchantia polymorpha HOM05D002421 ORTHO05D002560 1.2e-07 62.0 310 25.8
Pp3c20_12050 Physcomitrium patens HOM05D002440 ORTHO05D002576 1.2e-07 62.0 114 32.5
C05p21060 Brassica napus HOM05D002421 ORTHO05D002560 1.6e-07 61.6 366 23.0
Potri.001G211900 Populus trichocarpa HOM05D002421 ORTHO05D002560 2.1e-07 61.2 364 21.7
TPR.G23095 Trifolium pratense HOM05D002421 ORTHO05D002560 2.1e-07 61.2 365 22.7
Psat1g222000 Pisum sativum HOM05D002421 ORTHO05D002560 2.7e-07 60.8 365 23.3
Ciclev10001863m.g Citrus clementina HOM05D002421 ORTHO05D002560 4.6e-07 60.1 367 23.2
Sabra01G0163700 Salix brachista HOM05D002421 ORTHO05D002560 4.6e-07 60.1 370 22.7
TWI12G1261 Tripterygium wilfordii HOM05D002421 ORTHO05D002560 6.1e-07 59.7 368 21.7
TAR293G0004 Trochodendron aralioides HOM05D002421 ORTHO05D002560 6.1e-07 59.7 362 21.8
TAR381G1288 Trochodendron aralioides HOM05D002421 ORTHO05D002560 6.1e-07 59.7 362 21.8
A08p28650 Brassica napus HOM05D002421 ORTHO05D002560 7.9e-07 59.3 365 21.9
Gohir.A06G040100 Gossypium hirsutum HOM05D002421 ORTHO05D002560 7.9e-07 59.3 367 20.7
Gohir.D06G041100 Gossypium hirsutum HOM05D002421 ORTHO05D002560 7.9e-07 59.3 367 20.7
Hund16814 Selenicereus undatus HOM05D002421 ORTHO05D002560 7.9e-07 59.3 362 21.3
Duzib116G0924 Durio zibethinus HOM05D002421 ORTHO05D002560 1.0e-06 58.9 366 22.1
Dinv27395 Davidia involucrata HOM05D002421 ORTHO05D002560 1.3e-06 58.5 365 21.4
Gorai.010G045900 Gossypium raimondii HOM05D002421 ORTHO05D002560 1.3e-06 58.5 367 20.7
Nn5g27743 Nelumbo nucifera HOM05D011855 ORTHO05D011609 1.3e-06 58.5 122 28.7
Pp3c23_16590 Physcomitrium patens HOM05D002440 ORTHO05D002576 1.3e-06 58.5 114 29.8
unitig_0.g912 Utricularia gibba HOM05D002421 ORTHO05D002560 1.3e-06 58.5 376 22.6
Dinv41697 Davidia involucrata HOM05D011855 ORTHO05D011609 1.8e-06 58.2 106 26.4
Lj6g0006413 Lotus japonicus HOM05D002421 ORTHO05D002560 1.8e-06 58.2 364 22.0
MD12G1145700 Malus domestica HOM05D002421 ORTHO05D002560 1.8e-06 58.2 371 22.4
Medtr3g073480 Medicago truncatula HOM05D002421 ORTHO05D002560 1.8e-06 58.2 379 21.9
Gohir.D02G082300 Gossypium hirsutum HOM05D002421 ORTHO05D002560 2.3e-06 57.8 372 21.8
Nn5g27932 Nelumbo nucifera HOM05D002421 ORTHO05D002560 2.3e-06 57.8 366 21.0
TWI59G0213 Tripterygium wilfordii HOM05D002421 ORTHO05D002560 2.3e-06 57.8 368 21.7
Gorai.005G092200 Gossypium raimondii HOM05D002421 ORTHO05D002560 3.0e-06 57.4 371 21.6
Phvul.006G215900 Phaseolus vulgaris HOM05D002421 ORTHO05D002560 3.0e-06 57.4 362 22.7
Sabra02G0071100 Salix brachista HOM05D002421 ORTHO05D002560 3.0e-06 57.4 367 21.5
TAR624G0925 Trochodendron aralioides HOM05D002421 ORTHO05D002560 3.0e-06 57.4 362 21.8
MD04G1133000 Malus domestica HOM05D002421 ORTHO05D002560 3.9e-06 57.0 366 21.3
SalBow6G7077 Salvia bowleyana HOM05D002421 ORTHO05D002560 3.9e-06 57.0 365 21.1
AagrBONN_evm.TU.Sc2ySwM_228.1853 Anthoceros agrestis HOM05D002440 ORTHO05D002576 5.1e-06 56.6 387 21.7
AagrBONN_evm.TU.Sc2ySwM_228.1860 Anthoceros agrestis HOM05D001302 ORTHO05D001107 5.1e-06 56.6 136 28.7
Duzib093G2137 Durio zibethinus HOM05D002421 ORTHO05D002560 5.1e-06 56.6 368 21.5
Thecc.08G115500 Theobroma cacao HOM05D002421 ORTHO05D002560 5.1e-06 56.6 368 21.2
VMungo0540G0238 Vigna mungo HOM05D002421 ORTHO05D002560 5.1e-06 56.6 364 22.8
CARHR171840 Cardamine hirsuta HOM05D002440 ORTHO05D002576 6.7e-06 56.2 92 30.4
Ciclev10001805m.g Citrus clementina HOM05D002421 ORTHO05D002560 6.7e-06 56.2 382 20.4
Nn1g08511 Nelumbo nucifera HOM05D002421 ORTHO05D002560 6.7e-06 56.2 365 21.9
Prupe.1G507700 Prunus persica HOM05D002421 ORTHO05D002560 6.7e-06 56.2 365 21.4
THA.LOC104810096 Tarenaya hassleriana HOM05D002421 ORTHO05D002560 6.7e-06 56.2 373 21.2
ATR1134G091 Amborella trichopoda HOM05D002421 ORTHO05D002560 8.7e-06 55.8 134 28.4
CsaV3_6G000840 Cucumis sativus L. HOM05D002440 ORTHO05D002576 8.7e-06 55.8 119 31.1
FvH4_5g38440 Fragaria vesca HOM05D002421 ORTHO05D002560 8.7e-06 55.8 366 21.0
FAN08G2760 Fragaria x ananassa HOM05D002421 ORTHO05D002560 8.7e-06 55.8 366 21.0
Lalb_Chr15g0090671 Lupinus albus HOM05D002421 ORTHO05D002560 8.7e-06 55.8 378 20.9
TAR376G0702 Trochodendron aralioides HOM05D002421 ORTHO05D002560 8.7e-06 55.8 362 21.3
TAR628G0220 Trochodendron aralioides HOM05D002421 ORTHO05D002560 8.7e-06 55.8 365 21.4
TAR629G1939 Trochodendron aralioides HOM05D002440 ORTHO05D002576 8.7e-06 55.8 196 25.0


User provided reference genes

Program Settings