Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 0.0e+00 1827.8 1011 100.0
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 1.1e-110 405.6 1118 36.3
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 6.4e-66 256.9 819 35.5
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 3.3e-22 111.7 929 26.4
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 5.3e-20 104.4 110 53.6
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 1.2e-19 103.2 111 52.3
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.5e-19 102.8 905 24.4
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 2.0e-19 102.4 906 24.1
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 2.0e-19 102.4 906 24.1
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 4.5e-19 101.3 109 52.3
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 5.9e-19 100.9 919 23.5
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 1.0e-18 100.1 909 26.0
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.3e-18 99.8 208 39.9
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 2.2e-18 99.0 108 52.8
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 2.2e-18 99.0 111 52.3
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 2.2e-18 99.0 108 55.6
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 2.9e-18 98.6 108 54.6
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 3.8e-18 98.2 356 30.3
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 3.8e-18 98.2 922 24.7
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 3.8e-18 98.2 108 51.9
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 5.0e-18 97.8 951 24.7
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 6.5e-18 97.4 109 51.4
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 1.1e-17 96.7 109 50.5
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 1.4e-17 96.3 108 53.7
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 1.4e-17 96.3 904 23.9
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 1.4e-17 96.3 108 53.7
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 1.4e-17 96.3 109 52.3
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 3.2e-17 95.1 108 52.8
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 3.2e-17 95.1 105 53.3
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 4.2e-17 94.7 108 49.1
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 4.2e-17 94.7 108 50.9
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 4.2e-17 94.7 108 52.8
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 4.2e-17 94.7 908 25.6
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 7.2e-17 94.0 291 32.3
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 1.2e-16 93.2 287 32.8
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 2.1e-16 92.4 346 31.8
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 2.1e-16 92.4 108 51.9
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 2.7e-16 92.0 304 34.2
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 2.7e-16 92.0 109 49.5
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 3.6e-16 91.7 108 50.9
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 3.6e-16 91.7 314 32.5
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 3.6e-16 91.7 287 33.4
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 6.1e-16 90.9 109 50.5
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 6.1e-16 90.9 109 50.5
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 6.1e-16 90.9 109 50.5
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 6.1e-16 90.9 109 50.5
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 6.1e-16 90.9 108 50.9
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 6.1e-16 90.9 108 53.7
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 6.1e-16 90.9 109 48.6
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 8.0e-16 90.5 224 36.6
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 1.0e-15 90.1 170 37.6
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 1.0e-15 90.1 297 32.3
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 1.0e-15 90.1 287 32.8
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 1.4e-15 89.7 234 35.5
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 1.4e-15 89.7 110 50.9
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 1.4e-15 89.7 110 50.9
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 1.4e-15 89.7 172 41.3
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 1.4e-15 89.7 344 29.9
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 1.8e-15 89.4 109 50.5
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 1.8e-15 89.4 109 48.6
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 2.3e-15 89.0 109 48.6
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 2.3e-15 89.0 349 32.4
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 2.3e-15 89.0 1122 28.8
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 2.3e-15 89.0 109 48.6
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 2.3e-15 89.0 932 25.8
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 3.9e-15 88.2 978 24.5
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 3.9e-15 88.2 275 33.1
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 3.9e-15 88.2 220 37.3
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 5.2e-15 87.8 231 34.6
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 5.2e-15 87.8 105 49.5
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 6.7e-15 87.4 109 48.6
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 6.7e-15 87.4 178 40.4
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 6.7e-15 87.4 294 33.0
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 6.7e-15 87.4 899 23.6
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 6.7e-15 87.4 104 51.0
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 6.7e-15 87.4 108 46.3
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 8.8e-15 87.0 108 49.1
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 8.8e-15 87.0 108 49.1
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 8.8e-15 87.0 259 33.2
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 1.1e-14 86.7 348 31.0
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 1.5e-14 86.3 299 32.4
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.5e-14 86.3 902 23.6
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 1.5e-14 86.3 909 24.5
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 2.0e-14 85.9 105 47.6
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 2.0e-14 85.9 104 49.0
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 2.0e-14 85.9 244 34.8
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 2.6e-14 85.5 97 48.5
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 3.3e-14 85.1 106 50.0
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 3.3e-14 85.1 183 39.9
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 3.3e-14 85.1 290 31.7
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 4.4e-14 84.7 185 38.9
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 4.4e-14 84.7 921 24.2
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 4.4e-14 84.7 389 29.8
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 5.7e-14 84.3 288 31.6
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 5.7e-14 84.3 932 24.0
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 7.4e-14 84.0 102 47.1
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 1.3e-13 83.2 912 23.8
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 1.3e-13 83.2 197 37.1
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 1.7e-13 82.8 179 38.0
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 3.7e-13 81.6 949 24.9
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 3.7e-13 81.6 325 29.8
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 6.3e-13 80.9 106 47.2
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 8.2e-13 80.5 917 24.2
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 8.2e-13 80.5 107 46.7
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 1.4e-12 79.7 262 31.7
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 1.8e-12 79.3 903 24.0
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 1.8e-12 79.3 912 23.9
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 1.8e-12 79.3 910 24.2
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 3.1e-12 78.6 298 29.9
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 1.2e-11 76.6 907 23.6
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 1.2e-11 76.6 356 30.6
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 1.2e-11 76.6 907 24.4
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 3.5e-11 75.1 185 38.4
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 5.9e-11 74.3 982 23.8
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 7.7e-11 73.9 257 31.1
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 7.7e-11 73.9 257 31.1
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 7.7e-11 73.9 319 28.5
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 7.7e-11 73.9 185 37.8
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 1.0e-10 73.6 243 30.5
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 1.7e-10 72.8 833 23.5
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 2.2e-10 72.4 122 40.2
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 2.9e-10 72.0 920 22.8
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 3.2e-09 68.6 335 30.4
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.2e-08 66.6 347 30.3
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 1.2e-08 66.6 341 30.2
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 1.6e-08 66.2 348 28.7
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 1.6e-08 66.2 108 41.7
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 3.6e-08 65.1 349 30.9
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 5.2e-07 61.2 917 23.2
SEGI_29006 Sequoiadendron giganteum HOM05D005409 ORTHO05D006456 8.8e-07 60.5 300 29.7
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 1.2e-06 60.1 347 28.2
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 4.4e-06 58.2 334 29.6


User provided reference genes

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