Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-120 435.6 214 100.0
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.4e-17 92.8 95 53.7
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.2e-14 84.3 99 46.5
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 5.1e-13 79.0 105 43.8
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 6.2e-11 72.0 106 39.6
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 6.2e-11 72.0 89 46.1
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 6.2e-11 72.0 89 46.1
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.1e-10 71.2 90 42.2
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 1.1e-10 71.2 89 46.1
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.1e-10 71.2 89 46.1
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 1.4e-10 70.9 89 46.1
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.8e-10 70.5 90 42.2
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 1.8e-10 70.5 92 45.7
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 4.0e-10 69.3 105 36.2
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 4.0e-10 69.3 90 41.1
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.0e-10 69.3 171 31.0
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 5.2e-10 68.9 90 41.1
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.2e-09 67.8 90 41.1
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.2e-09 67.8 90 41.1
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 1.2e-09 67.8 92 42.4
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.5e-09 67.4 124 35.5
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-09 67.4 84 41.7
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 2.0e-09 67.0 90 41.1
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 2.0e-09 67.0 92 42.4
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 2.6e-09 66.6 132 37.1
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 2.6e-09 66.6 89 40.4
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 2.6e-09 66.6 92 41.3
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 3.4e-09 66.2 92 43.5
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.4e-09 66.2 91 40.7
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.4e-09 66.2 91 40.7
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.4e-09 66.2 90 40.0
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.4e-09 65.9 92 44.6
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.4e-09 65.9 92 44.6
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 4.4e-09 65.9 92 42.4
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 4.4e-09 65.9 90 41.1
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 5.8e-09 65.5 132 36.4
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 5.8e-09 65.5 92 43.5
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 5.8e-09 65.5 92 41.3
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 7.6e-09 65.1 92 41.3
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 7.6e-09 65.1 89 43.8
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 9.9e-09 64.7 89 42.7
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 9.9e-09 64.7 89 43.8
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 9.9e-09 64.7 89 42.7
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 9.9e-09 64.7 92 41.3
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 9.9e-09 64.7 105 41.9
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.3e-08 64.3 91 36.3
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.3e-08 64.3 89 43.8
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.3e-08 64.3 90 38.9
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.3e-08 64.3 91 38.5
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.3e-08 64.3 90 40.0
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.3e-08 64.3 92 42.4
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.7e-08 63.9 89 44.9
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.7e-08 63.9 90 37.8
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-08 63.9 87 39.1
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 2.2e-08 63.5 117 35.9
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 2.2e-08 63.5 81 42.0
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 2.2e-08 63.5 81 42.0
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 2.2e-08 63.5 92 42.4
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 2.2e-08 63.5 92 41.3
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.9e-08 63.2 92 43.5
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 3.8e-08 62.8 90 37.8
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 3.8e-08 62.8 81 42.0
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 3.8e-08 62.8 91 36.3
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.8e-08 62.8 90 37.8
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 4.9e-08 62.4 103 38.8
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 4.9e-08 62.4 84 40.5
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 4.9e-08 62.4 91 39.6
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 4.9e-08 62.4 90 37.8
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 4.9e-08 62.4 81 42.0
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 6.4e-08 62.0 92 41.3
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 6.4e-08 62.0 81 40.7
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 6.4e-08 62.0 92 42.4
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 8.4e-08 61.6 83 42.2
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 8.4e-08 61.6 93 44.1
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 8.4e-08 61.6 90 38.9
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 1.1e-07 61.2 90 38.9
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.1e-07 61.2 92 41.3
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 1.1e-07 61.2 92 41.3
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-07 61.2 80 36.2
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.1e-07 61.2 83 43.4
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.4e-07 60.8 91 36.3
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 1.4e-07 60.8 83 43.4
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-07 60.8 90 37.8
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.9e-07 60.5 89 39.3
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 1.9e-07 60.5 91 36.3
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-07 60.5 91 36.3
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-07 60.5 91 36.3
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-07 60.5 91 36.3
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-07 60.5 91 36.3
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-07 60.5 91 36.3
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.9e-07 60.5 89 39.3
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.2e-07 59.7 183 26.8
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 4.2e-07 59.3 90 38.9
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 4.2e-07 59.3 90 35.6
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 4.2e-07 59.3 90 35.6
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 4.2e-07 59.3 66 48.5
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 5.4e-07 58.9 91 38.5
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 5.4e-07 58.9 92 40.2
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 5.4e-07 58.9 90 37.8
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 5.4e-07 58.9 90 37.8
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 5.4e-07 58.9 173 27.2
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 5.4e-07 58.9 90 37.8
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 7.1e-07 58.5 90 34.4
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 9.3e-07 58.2 90 42.2
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 9.3e-07 58.2 90 35.6
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 9.3e-07 58.2 90 35.6
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.1e-06 57.0 92 41.3
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-06 57.0 91 36.3
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.1e-06 57.0 90 36.7
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 2.7e-06 56.6 80 37.5
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 3.5e-06 56.2 92 38.0
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 6.0e-06 55.5 109 33.0
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 6.0e-06 55.5 109 33.0


User provided reference genes

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