Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_2790 Physcomitrium patens HOM05D002897 ORTHO05D007570 7.8e-94 347.1 168 100.0
SEGI_35464 Sequoiadendron giganteum HOM05D002897 ORTHO05D007570 1.5e-36 156.8 116 65.5
Mapoly0068s0043 Marchantia polymorpha HOM05D002897 ORTHO05D007570 2.6e-36 156.0 114 65.8
CDE12G0398 Ceratophyllum demersum HOM05D002897 ORTHO05D007570 8.3e-27 124.4 107 54.2
Lsat_1_v5_gn_9_106701 Lactuca sativa HOM05D002897 ORTHO05D007570 2.7e-25 119.4 137 46.7
Lj1P779T15 Lonicera japonica HOM05D002897 ORTHO05D007570 5.9e-25 118.2 101 49.5
PSO566G0275 Papaver somniferum HOM05D002897 ORTHO05D007570 5.9e-25 118.2 113 48.7
DCAR_019749 Daucus carota HOM05D002897 ORTHO05D007570 1.3e-24 117.1 101 51.5
AUR62030035 Chenopodium quinoa HOM05D002897 ORTHO05D007570 1.7e-24 116.7 140 45.0
PSO782G2696 Papaver somniferum HOM05D002897 ORTHO05D007570 1.7e-24 116.7 113 47.8
PGR142G0275 Punica granatum HOM05D002897 ORTHO05D007570 1.7e-24 116.7 115 47.8
ECA240G2609 Erigeron canadensis HOM05D002897 ORTHO05D007570 2.2e-24 116.3 103 52.4
Solyc07g049230.1 Solanum lycopersicum HOM05D002897 ORTHO05D007570 2.2e-24 116.3 103 51.5
Sopen07g025240 Solanum pennellii HOM05D002897 ORTHO05D007570 2.2e-24 116.3 103 51.5
Carub.0004s1398 Capsella rubella HOM05D002897 ORTHO05D007570 2.9e-24 115.9 103 51.5
Eucgr.K00770 Eucalyptus grandis HOM05D002897 ORTHO05D007570 2.9e-24 115.9 112 50.0
AL4G28050 Arabidopsis lyrata HOM05D002897 ORTHO05D007570 3.8e-24 115.5 103 51.5
Cc05_g03210 Coffea canephora HOM05D002897 ORTHO05D007570 3.8e-24 115.5 103 50.5
Migut.H01236 Erythranthe guttata HOM05D002897 ORTHO05D007570 3.8e-24 115.5 151 40.4
Gohir.D07G193200 Gossypium hirsutum HOM05D002897 ORTHO05D007570 3.8e-24 115.5 127 44.9
Gorai.001G216300 Gossypium raimondii HOM05D002897 ORTHO05D007570 3.8e-24 115.5 127 44.9
TWI75G1337 Tripterygium wilfordii HOM05D002897 ORTHO05D007570 3.8e-24 115.5 140 46.4
TAR624G0083 Trochodendron aralioides HOM05D002897 ORTHO05D007570 3.8e-24 115.5 123 48.0
HanXRQChr03g0075631 Helianthus annuus HOM05D002897 ORTHO05D007570 5.0e-24 115.2 137 43.1
BcaC02g07907 Brassica carinata HOM05D002897 ORTHO05D007570 6.5e-24 114.8 102 51.0
AUR62006482 Chenopodium quinoa HOM05D002897 ORTHO05D007570 6.5e-24 114.8 139 44.6
Nn1g01968 Nelumbo nucifera HOM05D002897 ORTHO05D007570 6.5e-24 114.8 126 46.8
Peaxi162Scf00921g00013 Petunia axillaris HOM05D002897 ORTHO05D007570 6.5e-24 114.8 106 50.0
Aqoxy7G01529 Aquilegia oxysepala HOM05D002897 ORTHO05D007570 8.5e-24 114.4 110 48.2
AT2G32180 Arabidopsis thaliana HOM05D002897 ORTHO05D007570 8.5e-24 114.4 103 51.5
AT2G32650 Arabidopsis thaliana HOM05D002897 ORTHO05D007570 8.5e-24 114.4 103 51.5
EL10Ac3g06311 Beta vulgaris HOM05D002897 ORTHO05D007570 8.5e-24 114.4 103 50.5
Cfa014330 Carpinus fangiana HOM05D002897 ORTHO05D007570 8.5e-24 114.4 103 50.5
Haze_12785 Corylus avellana HOM05D002897 ORTHO05D007570 8.5e-24 114.4 103 50.5
Thhalv10017400m.g Eutrema salsugineum HOM05D002897 ORTHO05D007570 8.5e-24 114.4 103 50.5
MD09G1112200 Malus domestica HOM05D002897 ORTHO05D007570 8.5e-24 114.4 103 49.5
Potri.014G156900 Populus trichocarpa HOM05D002897 ORTHO05D007570 8.5e-24 114.4 102 49.0
Sp4g14970 Schrenkiella parvula HOM05D002897 ORTHO05D007570 8.5e-24 114.4 103 50.5
BcaB02g10455 Brassica carinata HOM05D002897 ORTHO05D007570 1.1e-23 114.0 102 51.0
BcaB02g10485 Brassica carinata HOM05D002897 ORTHO05D007570 1.1e-23 114.0 102 51.0
C04p62130 Brassica napus HOM05D002897 ORTHO05D007570 1.1e-23 114.0 102 51.0
CARHR126500 Cardamine hirsuta HOM05D002897 ORTHO05D007570 1.1e-23 114.0 103 50.5
Ciclev10017105m.g Citrus clementina HOM05D002897 ORTHO05D007570 1.1e-23 114.0 103 49.5
Prupe.3G212500 Prunus persica HOM05D002897 ORTHO05D007570 1.1e-23 114.0 103 49.5
SMO137G0344 Selaginella moellendorffii HOM05D002897 ORTHO05D007570 1.1e-23 114.0 102 51.0
MSTRG.12280 Avicennia marina HOM05D002897 ORTHO05D007570 1.5e-23 113.6 103 49.5
ATR0829G043 Amborella trichopoda HOM05D002897 ORTHO05D007570 1.9e-23 113.2 108 49.1
BcaC02g11346 Brassica carinata HOM05D002897 ORTHO05D007570 1.9e-23 113.2 102 51.0
A05p13340 Brassica napus HOM05D002897 ORTHO05D007570 1.9e-23 113.2 102 51.0
C04p17040 Brassica napus HOM05D002897 ORTHO05D007570 1.9e-23 113.2 102 51.0
BolC4t23256H Brassica oleracea HOM05D002897 ORTHO05D007570 1.9e-23 113.2 102 51.0
BraA05t20273Z Brassica rapa HOM05D002897 ORTHO05D007570 1.9e-23 113.2 102 51.0
GSVIVG01030485001 Vitis vinifera HOM05D002897 ORTHO05D007570 1.9e-23 113.2 103 50.5
BcaB06g28612 Brassica carinata HOM05D002897 ORTHO05D007570 2.5e-23 112.8 102 50.0
A05p12950 Brassica napus HOM05D002897 ORTHO05D007570 2.5e-23 112.8 101 50.5
BraA04t18016Z Brassica rapa HOM05D002897 ORTHO05D007570 2.5e-23 112.8 102 50.0
BraA05t20235Z Brassica rapa HOM05D002897 ORTHO05D007570 2.5e-23 112.8 101 50.5
CSS0041861 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D007570 2.5e-23 112.8 103 50.5
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 2.5e-23 112.8 103 50.5
SalBow1G1468 Salvia bowleyana HOM05D002897 ORTHO05D007570 2.5e-23 112.8 145 38.6
SalBow1G7922 Salvia bowleyana HOM05D002897 ORTHO05D007570 2.5e-23 112.8 103 49.5
AUR62002619 Chenopodium quinoa HOM05D002897 ORTHO05D007570 3.2e-23 112.5 103 49.5
PGSC0003DMG400000672 Solanum tuberosum HOM05D002897 ORTHO05D007570 3.2e-23 112.5 102 49.0
CAN.G664.11 Capsicum annuum HOM05D002897 ORTHO05D007570 4.2e-23 112.1 103 50.5
Gohir.A07G186700 Gossypium hirsutum HOM05D002897 ORTHO05D007570 4.2e-23 112.1 105 48.6
Oeu031218.1 Olea europaea HOM05D002897 ORTHO05D007570 4.2e-23 112.1 103 48.5
THA.LOC104826139 Tarenaya hassleriana HOM05D002897 ORTHO05D007570 4.2e-23 112.1 103 48.5
Manes.13G067600 Manihot esculenta HOM05D002897 ORTHO05D007570 5.5e-23 111.7 102 49.0
Manes.13G067625 Manihot esculenta HOM05D002897 ORTHO05D007570 5.5e-23 111.7 102 49.0
Nitab4.5_0000482g0100 Nicotiana tabacum HOM05D002897 ORTHO05D007570 5.5e-23 111.7 106 49.1
Nitab4.5_0003449g0090 Nicotiana tabacum HOM05D002897 ORTHO05D007570 5.5e-23 111.7 106 49.1
Aa31LG5G4700 Aethionema arabicum HOM05D002897 ORTHO05D007570 7.2e-23 111.3 105 48.6
BolC4t27692H Brassica oleracea HOM05D002897 ORTHO05D007570 7.2e-23 111.3 102 49.0
CiPaw.03G157100 Carya illinoinensis HOM05D002897 ORTHO05D007570 7.2e-23 111.3 139 42.4
ClCG02G002160 Citrullus lanatus HOM05D002897 ORTHO05D007570 7.2e-23 111.3 102 48.0
COL.COLO4_21856 Corchorus olitorius HOM05D002897 ORTHO05D007570 7.2e-23 111.3 102 48.0
Atru.chr6.3237 Acer truncatum HOM05D002897 ORTHO05D007570 9.4e-23 110.9 103 49.5
Ah.13g074350 Amaranthus hybridus HOM05D002897 ORTHO05D007570 9.4e-23 110.9 103 49.5
Sabra14G0118700 Salix brachista HOM05D002897 ORTHO05D007570 9.4e-23 110.9 103 48.5
TWI18G1070 Tripterygium wilfordii HOM05D002897 ORTHO05D007570 9.4e-23 110.9 103 49.5
CANSAT64G1239 Cannabis sativa HOM05D002897 ORTHO05D007570 1.2e-22 110.5 103 48.5
Sed0010664 Sechium edule HOM05D002897 ORTHO05D007570 1.2e-22 110.5 102 47.1
AUR62022566 Chenopodium quinoa HOM05D002897 ORTHO05D007570 2.1e-22 109.8 103 49.5
MELO3C018840.2 Cucumis melo HOM05D002897 ORTHO05D007570 2.1e-22 109.8 102 47.1
QL08p031156 Quercus lobata HOM05D002897 ORTHO05D007570 2.1e-22 109.8 120 44.2
FAN14G2228 Fragaria x ananassa HOM05D002897 ORTHO05D007570 2.7e-22 109.4 103 48.5
SGA_v2.0_scaffold49G18347 Striga asiatica HOM05D002897 ORTHO05D007570 2.7e-22 109.4 103 48.5
Actinidia13739 Actinidia chinensis HOM05D002897 ORTHO05D007570 3.6e-22 109.0 103 49.5
CsaV3_7G003350 Cucumis sativus L. HOM05D002897 ORTHO05D007570 3.6e-22 109.0 102 46.1
FAN02G3971 Fragaria x ananassa HOM05D002897 ORTHO05D007570 3.6e-22 109.0 103 48.5
RcHm_v2.0_Chr2g0158451 Rosa chinensis HOM05D002897 ORTHO05D007570 3.6e-22 109.0 103 48.5
Sc21g0001180 Simmondsia chinensis HOM05D002897 ORTHO05D007570 3.6e-22 109.0 103 48.5
Actinidia09728 Actinidia chinensis HOM05D002897 ORTHO05D007570 4.7e-22 108.6 103 47.6
Cpa.g.sc132.6 Carica papaya HOM05D002897 ORTHO05D007570 4.7e-22 108.6 103 47.6
MD17G1102300 Malus domestica HOM05D002897 ORTHO05D007570 4.7e-22 108.6 103 46.6
Hund20232 Selenicereus undatus HOM05D002897 ORTHO05D007570 4.7e-22 108.6 103 48.5
Thecc.01G180200 Theobroma cacao HOM05D002897 ORTHO05D007570 4.7e-22 108.6 103 48.5
Ca_03579_v3 Cicer arietinum L. HOM05D002897 ORTHO05D007570 8.0e-22 107.8 131 42.0
Os02g0784900 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D007570 1.0e-21 107.5 108 49.1
arahy.Tifrunner.gnm1.ann1.0I3WMA Arachis hypogaea HOM05D002897 ORTHO05D007570 1.4e-21 107.1 116 43.1
arahy.Tifrunner.gnm1.ann1.P1R172 Arachis hypogaea HOM05D002897 ORTHO05D007570 1.4e-21 107.1 116 43.1
unitig_62.g23231 Utricularia gibba HOM05D002897 ORTHO05D007570 2.3e-21 106.3 149 38.9
LjContig00564g0007535 Lotus japonicus HOM05D002897 ORTHO05D007570 4.0e-21 105.5 102 46.1
LjContig00564g0010319 Lotus japonicus HOM05D002897 ORTHO05D007570 4.0e-21 105.5 102 46.1
Duzib138G1435 Durio zibethinus HOM05D002897 ORTHO05D007570 5.2e-21 105.1 103 46.6
FvH4_6g42600 Fragaria vesca HOM05D002897 ORTHO05D007570 6.8e-21 104.8 103 47.6
Zm00001eb025350 Zea mays HOM05D002897 ORTHO05D007570 1.2e-20 104.0 108 50.0
TPR.G31174 Trifolium pratense HOM05D002897 ORTHO05D007570 1.5e-20 103.6 105 42.9
Glyma.02G270400 Glycine max HOM05D002897 ORTHO05D007570 2.0e-20 103.2 131 40.5
Glyma.14G046700 Glycine max HOM05D002897 ORTHO05D007570 2.6e-20 102.8 102 47.1
Phvul.008G211600 Phaseolus vulgaris HOM05D002897 ORTHO05D007570 3.4e-20 102.4 103 45.6
VMungo0647G0292 Vigna mungo HOM05D002897 ORTHO05D007570 4.4e-20 102.1 103 45.6
Psat6g158840 Pisum sativum HOM05D002897 ORTHO05D007570 7.5e-20 101.3 103 44.7
Medtr1g086000 Medicago truncatula HOM05D002897 ORTHO05D007570 9.8e-20 100.9 102 44.1
vmacro12175 Vaccinium macrocarpon HOM05D002897 ORTHO05D007570 1.3e-19 100.5 96 46.9
Lalb_Chr10g0105691 Lupinus albus HOM05D002897 ORTHO05D007570 3.7e-19 99.0 132 39.4
Rhsim06G0166200 Rhododendron simsii HOM05D002897 ORTHO05D007570 2.4e-18 96.3 169 36.1
CBR_g4877 Chara braunii HOM05D002897 ORTHO05D007570 7.0e-18 94.7 106 47.2
A04p25050 Brassica napus HOM05D002897 ORTHO05D007570 6.6e-16 88.2 83 47.0
BolC4t23293H Brassica oleracea HOM05D002897 ORTHO05D007570 5.6e-15 85.1 78 47.4
AagrBONN_evm.TU.Sc2ySwM_368.1899 Anthoceros agrestis HOM05D002897 ORTHO05D007570 7.3e-15 84.7 61 59.0
BcaC02g08731 Brassica carinata HOM05D002897 ORTHO05D007570 2.4e-10 69.7 91 38.5
FAN05G4540 Fragaria x ananassa HOM05D002897 ORTHO05D007570 2.4e-10 69.7 96 38.5
CBR_g2916 Chara braunii HOM05D001682 ORTHO05D001625 9.2e-10 67.8 94 38.3
PSO170G0622 Papaver somniferum HOM05D001682 ORTHO05D001625 7.8e-09 64.7 92 33.7
PSO017G1554 Papaver somniferum HOM05D001682 ORTHO05D001625 1.0e-08 64.3 90 35.6
PSO017G2400 Papaver somniferum HOM05D001682 ORTHO05D001625 1.3e-08 63.9 90 35.6
PGR102G3195 Punica granatum HOM05D001682 ORTHO05D001625 1.3e-08 63.9 118 31.4
EL10Ac2g03831 Beta vulgaris HOM05D001682 ORTHO05D001625 1.7e-08 63.5 92 33.7
Nn5g27157 Nelumbo nucifera HOM05D001682 ORTHO05D001625 1.7e-08 63.5 92 34.8
PSO170G5969 Papaver somniferum HOM05D001682 ORTHO05D001625 1.7e-08 63.5 90 35.6
Phvul.004G128600 Phaseolus vulgaris HOM05D001682 ORTHO05D001625 1.7e-08 63.5 90 37.8
arahy.Tifrunner.gnm1.ann1.8LUP09 Arachis hypogaea HOM05D001682 ORTHO05D001625 2.3e-08 63.2 94 34.0
arahy.Tifrunner.gnm1.ann1.BSS6AU Arachis hypogaea HOM05D001682 ORTHO05D001625 2.3e-08 63.2 94 34.0
Lj5g0008129 Lotus japonicus HOM05D001682 ORTHO05D001625 3.0e-08 62.8 109 30.3
Psat1g111880 Pisum sativum HOM05D001682 ORTHO05D001625 3.0e-08 62.8 94 34.0
BcaB06g28610 Brassica carinata HOM05D002897 ORTHO05D007570 5.0e-08 62.0 60 43.3
BcaB06g28611 Brassica carinata HOM05D002897 ORTHO05D007570 5.0e-08 62.0 60 43.3
FAN09G3117 Fragaria x ananassa HOM05D002897 ORTHO05D007570 5.0e-08 62.0 60 45.0
Glyma.09G155000 Glycine max HOM05D001682 ORTHO05D001625 6.6e-08 61.6 90 36.7
Medtr6g060170 Medicago truncatula HOM05D001682 ORTHO05D001625 8.6e-08 61.2 94 33.0
Aqoxy6G00022 Aquilegia oxysepala HOM05D001682 ORTHO05D001625 1.5e-07 60.5 111 29.7
CANSAT80G1848 Cannabis sativa HOM05D001682 ORTHO05D001625 1.5e-07 60.5 92 30.4
Lsat_1_v5_gn_4_132341 Lactuca sativa HOM05D001682 ORTHO05D001625 1.5e-07 60.5 92 32.6
Nitab4.5_0000087g0100 Nicotiana tabacum HOM05D001682 ORTHO05D001625 1.5e-07 60.5 88 31.8
TPR.G16642 Trifolium pratense HOM05D001682 ORTHO05D001625 1.5e-07 60.5 94 31.9
MELO3C022114.2 Cucumis melo HOM05D001682 ORTHO05D001625 1.9e-07 60.1 92 33.7
TWI12G0128 Tripterygium wilfordii HOM05D001682 ORTHO05D001625 1.9e-07 60.1 92 31.5
Cfa008026 Carpinus fangiana HOM05D001682 ORTHO05D001625 2.5e-07 59.7 100 30.0
CsaV3_5G039360 Cucumis sativus L. HOM05D001682 ORTHO05D001625 2.5e-07 59.7 92 33.7
HanXRQChr09g0266921 Helianthus annuus HOM05D001682 ORTHO05D001625 2.5e-07 59.7 92 32.6
Actinidia03537 Actinidia chinensis HOM05D001682 ORTHO05D001625 3.3e-07 59.3 134 29.1
Ca_09898_v3 Cicer arietinum L. HOM05D000128 ORTHO05D002044 3.3e-07 59.3 136 29.4
ClCG00G005160 Citrullus lanatus HOM05D001682 ORTHO05D001625 3.3e-07 59.3 92 33.7
ClCG08G001910 Citrullus lanatus HOM05D001682 ORTHO05D001625 3.3e-07 59.3 92 33.7
Glyma.16G205400 Glycine max HOM05D001682 ORTHO05D001625 3.3e-07 59.3 94 30.9
VMungo0464G1566 Vigna mungo HOM05D001682 ORTHO05D001625 3.3e-07 59.3 90 35.6
Lj2g0020308 Lotus japonicus HOM05D001682 ORTHO05D001625 4.3e-07 58.9 90 33.3
Lalb_Chr04g0249921 Lupinus albus HOM05D002897 ORTHO05D007570 4.3e-07 58.9 102 35.3
Lalb_Chr06g0168821 Lupinus albus HOM05D001682 ORTHO05D001625 4.3e-07 58.9 92 31.5
Sabra13G0080100 Salix brachista HOM05D001682 ORTHO05D001625 4.3e-07 58.9 161 28.0
Haze_14029 Corylus avellana HOM05D001682 ORTHO05D001625 5.6e-07 58.5 100 29.0
ClCG06G001330 Citrullus lanatus HOM05D001682 ORTHO05D001625 7.3e-07 58.2 95 32.6
MD00G1089100 Malus domestica HOM05D001682 ORTHO05D001625 7.3e-07 58.2 92 31.5
GSVIVG01037105001 Vitis vinifera HOM05D001682 ORTHO05D001625 7.3e-07 58.2 90 32.2
Lalb_Chr03g0033221 Lupinus albus HOM05D001682 ORTHO05D001625 9.5e-07 57.8 94 30.9
Prupe.8G000800 Prunus persica HOM05D001682 ORTHO05D001625 9.5e-07 57.8 92 29.3
Sed0004544 Sechium edule HOM05D001682 ORTHO05D001625 9.5e-07 57.8 92 33.7
Medtr1g076840 Medicago truncatula HOM05D001682 ORTHO05D001625 1.2e-06 57.4 94 30.9
Sed0002686 Sechium edule HOM05D001682 ORTHO05D001625 1.2e-06 57.4 94 30.9
CAN.G582.5 Capsicum annuum HOM05D001682 ORTHO05D001625 1.6e-06 57.0 88 33.0
CiPaw.03G010800 Carya illinoinensis HOM05D001682 ORTHO05D001625 1.6e-06 57.0 90 28.9
Glyma.16G205600 Glycine max HOM05D001682 ORTHO05D001625 1.6e-06 57.0 90 33.3
Cc10_g16240 Coffea canephora HOM05D001682 ORTHO05D001625 2.1e-06 56.6 94 31.9
MSTRG.10618 Avicennia marina HOM05D001682 ORTHO05D001625 2.8e-06 56.2 92 30.4
Lalb_Chr03g0033231 Lupinus albus HOM05D001682 ORTHO05D001625 2.8e-06 56.2 90 34.4
Oeu051765.1 Olea europaea HOM05D001682 ORTHO05D001625 2.8e-06 56.2 90 32.2
Peaxi162Scf00071g01034 Petunia axillaris HOM05D001682 ORTHO05D001625 2.8e-06 56.2 88 31.8
SalBow7G2699 Salvia bowleyana HOM05D001682 ORTHO05D001625 3.6e-06 55.8 92 30.4
ECA232G3408 Erigeron canadensis HOM05D001682 ORTHO05D001625 4.7e-06 55.5 92 29.3
CAN.G941.31 Capsicum annuum HOM05D001682 ORTHO05D001625 6.2e-06 55.1 89 30.3
Manes.17G002700 Manihot esculenta HOM05D001682 ORTHO05D001625 8.0e-06 54.7 92 30.4
Medtr5g005820 Medicago truncatula HOM05D001682 ORTHO05D001625 8.0e-06 54.7 84 34.5
Phvul.004G128400 Phaseolus vulgaris HOM05D001682 ORTHO05D001625 8.0e-06 54.7 92 29.3
Psat6g112360 Pisum sativum HOM05D001682 ORTHO05D001625 8.0e-06 54.7 131 30.5
QL09p000914 Quercus lobata HOM05D001682 ORTHO05D001625 8.0e-06 54.7 90 31.1
RcHm_v2.0_Chr6g0249351 Rosa chinensis HOM05D001682 ORTHO05D001625 8.0e-06 54.7 92 29.3


User provided reference genes

Program Settings