Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_2600 Physcomitrium patens HOM05D006123 ORTHO05D007578 5.2e-227 790.8 422 100.0
Mapoly0124s0025 Marchantia polymorpha HOM05D006123 ORTHO05D007578 1.3e-89 334.3 419 50.4
SEGI_34276 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 2.9e-89 333.2 356 55.9
AUR62007355 Chenopodium quinoa HOM05D006123 ORTHO05D007578 8.3e-84 315.1 381 48.0
CiPaw.05G096700 Carya illinoinensis HOM05D006123 ORTHO05D007578 5.4e-83 312.4 401 48.4
Hund14375 Selenicereus undatus HOM05D006123 ORTHO05D007578 2.3e-81 307.0 390 47.7
SMO367G0194 Selaginella moellendorffii HOM05D006123 ORTHO05D007578 2.9e-81 306.6 401 48.1
CARHR161640 Cardamine hirsuta HOM05D006123 ORTHO05D007578 6.6e-81 305.4 379 49.1
TAR374G1410 Trochodendron aralioides HOM05D006123 ORTHO05D007578 6.6e-81 305.4 377 49.3
EL10Ac5g12009 Beta vulgaris HOM05D006123 ORTHO05D007578 4.3e-80 302.8 380 47.1
CDE07G0286 Ceratophyllum demersum HOM05D006123 ORTHO05D007578 4.3e-80 302.8 381 47.8
Ciclev10028563m.g Citrus clementina HOM05D006123 ORTHO05D007578 4.3e-80 302.8 398 46.2
SEGI_37385 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 4.3e-80 302.8 323 53.6
Sc07g0008580 Simmondsia chinensis HOM05D006123 ORTHO05D007578 4.3e-80 302.8 386 47.9
BcaB01g00454 Brassica carinata HOM05D006123 ORTHO05D007578 7.3e-80 302.0 378 48.7
PGR102G0396 Punica granatum HOM05D006123 ORTHO05D007578 7.3e-80 302.0 375 48.5
HPP92_007055 Vanilla planifolia HOM05D006123 ORTHO05D007578 1.6e-79 300.8 399 46.9
TWI36G1213 Tripterygium wilfordii HOM05D006123 ORTHO05D007578 2.1e-79 300.4 379 47.0
Eucgr.B03575 Eucalyptus grandis HOM05D006123 ORTHO05D007578 2.8e-79 300.1 369 48.0
Manes.08G098100 Manihot esculenta HOM05D006123 ORTHO05D007578 2.8e-79 300.1 392 47.7
Sabra01G0050800 Salix brachista HOM05D006123 ORTHO05D007578 2.8e-79 300.1 385 45.2
BraA09t39969Z Brassica rapa HOM05D006123 ORTHO05D007578 4.7e-79 299.3 378 47.9
AL5G32490 Arabidopsis lyrata HOM05D006123 ORTHO05D007578 6.1e-79 298.9 380 48.7
C08p27270 Brassica napus HOM05D006123 ORTHO05D007578 6.1e-79 298.9 378 48.1
BolC8t50344H Brassica oleracea HOM05D006123 ORTHO05D007578 6.1e-79 298.9 378 48.1
A09p45080 Brassica napus HOM05D006123 ORTHO05D007578 8.0e-79 298.5 378 47.6
Lalb_Chr12g0202061 Lupinus albus HOM05D006123 ORTHO05D007578 8.0e-79 298.5 385 47.0
BcaB01g00394 Brassica carinata HOM05D006123 ORTHO05D007578 2.3e-78 297.0 378 48.1
MD13G1135300 Malus domestica HOM05D006123 ORTHO05D007578 2.3e-78 297.0 391 46.8
Potri.001G072200 Populus trichocarpa HOM05D006123 ORTHO05D007578 3.0e-78 296.6 384 45.3
Sp5g10290 Schrenkiella parvula HOM05D006123 ORTHO05D007578 3.0e-78 296.6 377 48.8
Cpa.g.sc252.15 Carica papaya HOM05D006123 ORTHO05D007578 1.2e-77 294.7 386 46.9
Os09g0512700 Oryza sativa ssp. japonica HOM05D006123 ORTHO05D007578 2.0e-77 293.9 367 48.2
Thecc.01G233200 Theobroma cacao HOM05D006123 ORTHO05D007578 2.0e-77 293.9 385 47.0
Prupe.1G210000 Prunus persica HOM05D006123 ORTHO05D007578 3.4e-77 293.1 395 45.3
Actinidia13519 Actinidia chinensis HOM05D006123 ORTHO05D007578 4.4e-77 292.7 366 49.2
THA.LOC104823032 Tarenaya hassleriana HOM05D006123 ORTHO05D007578 7.5e-77 292.0 378 47.9
Gohir.D11G063700 Gossypium hirsutum HOM05D006123 ORTHO05D007578 2.2e-76 290.4 385 46.0
Atru.chr12.1487 Acer truncatum HOM05D006123 ORTHO05D007578 2.9e-76 290.0 399 46.1
ATR0582G035 Amborella trichopoda HOM05D006123 ORTHO05D007578 3.7e-76 289.7 364 47.8
AT3G51980 Arabidopsis thaliana HOM05D006123 ORTHO05D007578 3.7e-76 289.7 378 47.4
Gohir.A11G059600 Gossypium hirsutum HOM05D006123 ORTHO05D007578 3.7e-76 289.7 385 45.5
CSS0037190 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 1.1e-75 288.1 360 49.2
Gorai.007G068900 Gossypium raimondii HOM05D006123 ORTHO05D007578 1.1e-75 288.1 385 45.7
Ah.07g200930 Amaranthus hybridus HOM05D006123 ORTHO05D007578 1.4e-75 287.7 387 45.0
HPP92_025319 Vanilla planifolia HOM05D006123 ORTHO05D007578 1.9e-75 287.3 388 43.6
Carub.0005s1833 Capsella rubella HOM05D006123 ORTHO05D007578 2.4e-75 287.0 379 47.2
FvH4_4g21990 Fragaria vesca HOM05D006123 ORTHO05D007578 3.2e-75 286.6 381 45.4
FAN07G1474 Fragaria x ananassa HOM05D006123 ORTHO05D007578 4.1e-75 286.2 381 45.7
Lj6g0015569 Lotus japonicus HOM05D006123 ORTHO05D007578 4.1e-75 286.2 378 46.3
VMungo0540G0877 Vigna mungo HOM05D006123 ORTHO05D007578 4.1e-75 286.2 390 44.6
ClCG06G001650 Citrullus lanatus HOM05D006123 ORTHO05D007578 5.4e-75 285.8 362 46.1
GSVIVG01001139001 Vitis vinifera HOM05D006123 ORTHO05D007578 9.2e-75 285.0 317 52.4
Medtr3g080080 Medicago truncatula HOM05D006123 ORTHO05D007578 1.2e-74 284.6 379 47.2
RcHm_v2.0_Chr4g0428181 Rosa chinensis HOM05D006123 ORTHO05D007578 1.2e-74 284.6 361 47.4
SalBow2G0521 Salvia bowleyana HOM05D006123 ORTHO05D007578 1.2e-74 284.6 324 51.9
CsaV3_6G007640 Cucumis sativus L. HOM05D006123 ORTHO05D007578 1.6e-74 284.3 365 45.2
Aa31LG10G7030 Aethionema arabicum HOM05D006123 ORTHO05D007578 2.0e-74 283.9 392 44.1
Zm00001eb318160 Zea mays HOM05D006123 ORTHO05D007578 2.0e-74 283.9 332 49.4
Sed0027865 Sechium edule HOM05D006123 ORTHO05D007578 2.7e-74 283.5 324 48.8
Hma1.2p1_0073F.1_g038620 Hydrangea macrophylla HOM05D006123 ORTHO05D007578 3.5e-74 283.1 367 48.2
Duzib264G0674 Durio zibethinus HOM05D006123 ORTHO05D007578 6.0e-74 282.3 386 45.3
MELO3C022368.2 Cucumis melo HOM05D006123 ORTHO05D007578 1.7e-73 280.8 356 44.9
MBI07_g11054_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 6.6e-73 278.9 358 47.5
QL03p046914 Quercus lobata HOM05D006123 ORTHO05D007578 1.1e-72 278.1 353 47.0
Psat5g111880 Pisum sativum HOM05D006123 ORTHO05D007578 1.9e-72 277.3 377 45.4
Cc11_g14840 Coffea canephora HOM05D006123 ORTHO05D007578 2.5e-72 276.9 389 44.2
TPR.G310 Trifolium pratense HOM05D006123 ORTHO05D007578 2.5e-72 276.9 380 45.3
Dinv07617 Davidia involucrata HOM05D006123 ORTHO05D007578 9.5e-72 275.0 391 45.5
Haze_12544 Corylus avellana HOM05D006123 ORTHO05D007578 1.2e-71 274.6 440 42.3
arahy.Tifrunner.gnm1.ann1.9L3MVK Arachis hypogaea HOM05D006123 ORTHO05D007578 3.6e-71 273.1 340 49.1
arahy.Tifrunner.gnm1.ann1.XG2HYZ Arachis hypogaea HOM05D006123 ORTHO05D007578 3.6e-71 273.1 340 49.1
ECA234G2504 Erigeron canadensis HOM05D006123 ORTHO05D007578 3.6e-71 273.1 331 47.7
arahy.Tifrunner.gnm1.ann1.BTS312 Arachis hypogaea HOM05D006123 ORTHO05D007578 4.7e-71 272.7 340 49.1
COL.COLO4_15650 Corchorus olitorius HOM05D006123 ORTHO05D007578 1.1e-70 271.6 386 45.9
Migut.K01149 Erythranthe guttata HOM05D006123 ORTHO05D007578 2.3e-70 270.4 357 45.7
PSO478G0970 Papaver somniferum HOM05D006123 ORTHO05D007578 1.5e-69 267.7 402 42.3
HanXRQChr16g0516431 Helianthus annuus HOM05D006123 ORTHO05D007578 5.8e-69 265.8 376 42.0
Oeu036874.2 Olea europaea HOM05D006123 ORTHO05D007578 2.9e-68 263.5 437 42.6
Aqoxy6G00002 Aquilegia oxysepala HOM05D006123 ORTHO05D007578 8.3e-68 261.9 385 43.9
Sabra03G0115100 Salix brachista HOM05D006123 ORTHO05D007578 1.1e-67 261.5 357 43.4
Lsat_1_v5_gn_4_1741 Lactuca sativa HOM05D006123 ORTHO05D007578 1.4e-67 261.2 373 44.8
unitig_749.g13336 Utricularia gibba HOM05D006123 ORTHO05D007578 2.4e-67 260.4 407 42.5
Phvul.006G013100 Phaseolus vulgaris HOM05D006123 ORTHO05D007578 9.2e-67 258.5 319 48.6
PGSC0003DMG400013211 Solanum tuberosum HOM05D006123 ORTHO05D007578 2.1e-66 257.3 341 45.2
PGSC0003DMG400032561 Solanum tuberosum HOM05D006123 ORTHO05D007578 2.1e-66 257.3 341 45.2
FAN12G4288 Fragaria x ananassa HOM05D006123 ORTHO05D007578 2.7e-66 256.9 322 48.1
Lj3C1079T4 Lonicera japonica HOM05D006123 ORTHO05D007578 3.5e-66 256.5 331 47.7
CAN.G624.16 Capsicum annuum HOM05D006123 ORTHO05D007578 4.6e-66 256.1 386 43.3
Solyc04g009320.3 Solanum lycopersicum HOM05D006123 ORTHO05D007578 1.7e-65 254.2 341 44.6
CBR_g16829 Chara braunii HOM05D006123 ORTHO05D007578 3.9e-65 253.1 336 45.5
Sopen04g004440 Solanum pennellii HOM05D006123 ORTHO05D007578 6.6e-65 252.3 330 45.8
MBI11_g04258_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 1.9e-64 250.8 282 52.5
Ca_16273_v3 Cicer arietinum L. HOM05D006123 ORTHO05D007578 2.5e-64 250.4 320 48.1
DCAR_023486 Daucus carota HOM05D006123 ORTHO05D007578 3.3e-64 250.0 418 41.1
Nitab4.5_0002113g0090 Nicotiana tabacum HOM05D006123 ORTHO05D007578 2.8e-63 246.9 361 42.9
AUR62018638 Chenopodium quinoa HOM05D006123 ORTHO05D007578 1.4e-62 244.6 277 51.3
SGA_v2.0_scaffold258G45757 Striga asiatica HOM05D006123 ORTHO05D007578 4.4e-61 239.6 316 47.8
CSS0017548 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 5.8e-61 239.2 283 52.3
Thhalv10010449m.g Eutrema salsugineum HOM05D006123 ORTHO05D007578 4.3e-56 223.0 273 51.3
Potri.003G158701 Populus trichocarpa HOM05D006123 ORTHO05D007578 3.9e-49 199.9 253 45.5
vmacro15977 Vaccinium macrocarpon HOM05D006123 ORTHO05D007578 1.9e-48 197.6 481 33.7
Peaxi162Scf00760g00014 Petunia axillaris HOM05D006123 ORTHO05D007578 2.4e-46 190.7 330 38.5
AagrBONN_evm.TU.Sc2ySwM_344.168 Anthoceros agrestis HOM05D006123 ORTHO05D007578 3.1e-46 190.3 361 38.2
Rhsim12G0090900 Rhododendron simsii HOM05D006123 ORTHO05D007578 5.4e-43 179.5 230 48.7
Zm00001eb097710 Zea mays HOM05D006123 ORTHO05D007578 1.3e-39 168.3 208 47.6
Nitab4.5_0007261g0070 Nicotiana tabacum HOM05D006123 ORTHO05D007578 4.5e-37 159.8 216 45.8
Migut.H01174 Erythranthe guttata HOM05D006123 ORTHO05D007578 1.5e-32 144.8 131 60.3
Lj2g0003712 Lotus japonicus HOM05D006123 ORTHO05D007578 1.6e-31 141.4 201 44.3
Nn3g16171 Nelumbo nucifera HOM05D006123 ORTHO05D007578 2.4e-30 137.5 404 30.0
Cre07.g323500 Chlamydomonas reinhardtii HOM05D006123 ORTHO05D007578 3.1e-30 137.1 217 41.9
Glyma.20G054300 Glycine max HOM05D006123 ORTHO05D007578 1.6e-23 114.8 148 48.0
Glyma.20G054400 Glycine max HOM05D006123 ORTHO05D007578 5.3e-22 109.8 187 39.6
AUR62039304 Chenopodium quinoa HOM05D006123 ORTHO05D007578 2.9e-20 104.0 106 58.5
Lsat_1_v5_gn_6_11200 Lactuca sativa HOM05D001489 ORTHO05D007578 6.0e-18 96.3 203 36.9
Migut.J00308 Erythranthe guttata HOM05D003692 ORTHO05D004295 1.5e-13 81.6 232 31.0
PRCOL_00004534 Prasinoderma coloniale HOM05D006123 ORTHO05D007578 2.2e-12 77.8 244 31.1
Os03g0271400 Oryza sativa ssp. japonica HOM05D003692 ORTHO05D004295 3.8e-12 77.0 219 32.0
SHI51501 Sapria himalayana HOM05D006123 ORTHO05D007578 3.8e-12 77.0 164 34.8
SHI10577 Sapria himalayana HOM05D006123 ORTHO05D007578 5.0e-12 76.6 144 36.1
MCO07G742 Micromonas commoda HOM05D006123 ORTHO05D007578 9.4e-11 72.4 169 34.9
BcaB01g00386 Brassica carinata HOM05D006123 ORTHO05D007578 1.6e-10 71.6 94 45.7
Solyc09g011030.3 Solanum lycopersicum HOM05D003692 ORTHO05D004295 1.6e-10 71.6 227 30.8
Sopen09g005760 Solanum pennellii HOM05D003692 ORTHO05D004295 3.6e-10 70.5 227 30.8
Cfa017343 Carpinus fangiana HOM05D003692 ORTHO05D004295 6.1e-10 69.7 217 29.5
PGSC0003DMG400008824 Solanum tuberosum HOM05D003692 ORTHO05D004295 6.1e-10 69.7 227 30.0
EL10As1g23134 Beta vulgaris HOM05D003692 ORTHO05D004295 7.9e-10 69.3 220 31.4
Actinidia26484 Actinidia chinensis HOM05D003692 ORTHO05D004295 2.3e-09 67.8 336 26.8
Cre09.g397512 Chlamydomonas reinhardtii HOM05D003692 ORTHO05D004295 2.3e-09 67.8 136 33.8
Haze_20825 Corylus avellana HOM05D003692 ORTHO05D004295 2.0e-08 64.7 233 28.8
ECA248G3834 Erigeron canadensis HOM05D003692 ORTHO05D004295 2.5e-08 64.3 330 26.1
TAR369G0528 Trochodendron aralioides HOM05D003692 ORTHO05D004295 2.5e-08 64.3 337 26.4
Cfa023403 Carpinus fangiana HOM05D006123 ORTHO05D007578 3.3e-08 63.9 128 30.5
vmacro20176 Vaccinium macrocarpon HOM05D003692 ORTHO05D004295 6.3e-07 59.7 195 28.2
CDE04G2001 Ceratophyllum demersum HOM05D006123 ORTHO05D007578 8.2e-07 59.3 68 44.1
Actinidia11270 Actinidia chinensis HOM05D003692 ORTHO05D004295 3.1e-06 57.4 279 25.8
MBI11_g33503_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 4.1e-06 57.0 111 36.0
SMO302G0018 Selaginella moellendorffii HOM05D003692 ORTHO05D004295 5.3e-06 56.6 274 25.5


User provided reference genes

Program Settings